RNA–Protein interactions for RNA: ENST00000517904.1

CTNNA1-205, Transcript of catenin alpha 1, humanhuman

TSL 3

Gene CTNNA1, Length 661 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-205ENST00000517904 NISCHQ9Y2I1 1504 aa29.04■■■□□ 2.24
CTNNA1-205ENST00000517904 ABCC9O60706 1549 aa26.5■■□□□ 1.83
CTNNA1-205ENST00000517904 CCDC180Q9P1Z9 1646 aa26.19■■□□□ 1.78
CTNNA1-205ENST00000517904 DNAJC5BQ9UF47 199 aa25.17■■□□□ 1.62
CTNNA1-205ENST00000517904 RB1CC1Q8TDY2 1594 aa25.06■■□□□ 1.6
CTNNA1-205ENST00000517904 NACADO15069 1562 aa24.81■■□□□ 1.56
CTNNA1-205ENST00000517904 PABPN1Q86U42 306 aaKnown RBP eCLIP24.63■■□□□ 1.53
CTNNA1-205ENST00000517904 DCAF8L2P0C7V8 631 aa24.6■■□□□ 1.53
CTNNA1-205ENST00000517904 UNC13AQ9UPW8 1703 aa24.55■■□□□ 1.52
CTNNA1-205ENST00000517904 BICRAQ9NZM4 1560 aa24.41■■□□□ 1.5
CTNNA1-205ENST00000517904 MYO15BQ96JP2 1530 aa24.38■■□□□ 1.49
CTNNA1-205ENST00000517904 ZCCHC6Q5VYS8 1495 aaKnown RBP24.02■■□□□ 1.44
CTNNA1-205ENST00000517904 SHROOM4Q9ULL8 1493 aa23.98■■□□□ 1.43
CTNNA1-205ENST00000517904 DCAF1Q9Y4B6 1507 aa23.96■■□□□ 1.43
CTNNA1-205ENST00000517904 CC2D2AQ9P2K1 1620 aa23.93■■□□□ 1.42
CTNNA1-205ENST00000517904 CECR2Q9BXF3 1484 aa23.9■■□□□ 1.42
CTNNA1-205ENST00000517904 SCRIBQ14160 1630 aa23.87■■□□□ 1.41
CTNNA1-205ENST00000517904 EIF4G1Q04637 1599 aaKnown RBP23.81■■□□□ 1.4
CTNNA1-205ENST00000517904 DNAJC5Q9H3Z4 198 aa23.28■■□□□ 1.32
CTNNA1-205ENST00000517904 CUX2O14529 1486 aa22.94■■□□□ 1.26
CTNNA1-205ENST00000517904 NCAPD3P42695 1498 aa22.93■■□□□ 1.26
CTNNA1-205ENST00000517904 ERCC6Q03468 1493 aa22.87■■□□□ 1.25
CTNNA1-205ENST00000517904 ATAD2BQ9ULI0 1458 aa22.83■■□□□ 1.25
CTNNA1-205ENST00000517904 HMGXB3Q12766 1538 aa22.73■■□□□ 1.23
CTNNA1-205ENST00000517904 SMARCA4P51532 1647 aa22.73■■□□□ 1.23
CTNNA1-205ENST00000517904 SMARCA2P51531 1590 aa22.72■■□□□ 1.23
CTNNA1-205ENST00000517904 NESP48681 1621 aa22.71■■□□□ 1.23
CTNNA1-205ENST00000517904 BAZ1BQ9UIG0 1483 aaKnown RBP22.58■■□□□ 1.2
CTNNA1-205ENST00000517904 BAZ1AQ9NRL2 1556 aaPredicted RBP22.55■■□□□ 1.2
CTNNA1-205ENST00000517904 THOC2Q8NI27 1593 aaKnown RBP22.53■■□□□ 1.2
CTNNA1-205ENST00000517904 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
CTNNA1-205ENST00000517904 LAMC3Q9Y6N6 1575 aa22.46■■□□□ 1.19
CTNNA1-205ENST00000517904 MROH2BQ7Z745 1585 aa22.4■■□□□ 1.18
CTNNA1-205ENST00000517904 KIF21AQ7Z4S6 1674 aa22.39■■□□□ 1.18
CTNNA1-205ENST00000517904 PDS5BQ9NTI5 1447 aa22.31■■□□□ 1.16
CTNNA1-205ENST00000517904 CADPSQ9ULU8 1353 aa22.21■■□□□ 1.15
CTNNA1-205ENST00000517904 MRC2Q9UBG0 1479 aa22.16■■□□□ 1.14
CTNNA1-205ENST00000517904 WDR62O43379 1518 aa22.14■■□□□ 1.13
CTNNA1-205ENST00000517904 TRIM41Q8WV44 630 aa22.13■■□□□ 1.13
CTNNA1-205ENST00000517904 WIZO95785 1651 aa22.11■■□□□ 1.13
CTNNA1-205ENST00000517904 CEP164Q9UPV0 1460 aa22.01■■□□□ 1.11
CTNNA1-205ENST00000517904 FANCD2Q9BXW9 1451 aa21.96■■□□□ 1.11
CTNNA1-205ENST00000517904 CFTRP13569 1480 aa21.91■■□□□ 1.1
CTNNA1-205ENST00000517904 URB2Q14146 1524 aaKnown RBP21.84■■□□□ 1.09
CTNNA1-205ENST00000517904 OSCARQ8IYS5 282 aa21.82■■□□□ 1.08
CTNNA1-205ENST00000517904 RSF1Q96T23 1441 aaPredicted RBP21.81■■□□□ 1.08
CTNNA1-205ENST00000517904 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
CTNNA1-205ENST00000517904 PRDM2Q13029 1718 aa21.66■■□□□ 1.06
CTNNA1-205ENST00000517904 AEBP2Q6ZN18 517 aaPredicted RBP21.63■■□□□ 1.05
CTNNA1-205ENST00000517904 RIMBP3CA6NJZ7 1639 aa21.62■■□□□ 1.05
CTNNA1-205ENST00000517904 RIMBP3BA6NNM3 1639 aa21.62■■□□□ 1.05
CTNNA1-205ENST00000517904 RIMBP3Q9UFD9 1639 aa21.62■■□□□ 1.05
CTNNA1-205ENST00000517904 ZNF608Q9ULD9 1512 aaPredicted RBP21.62■■□□□ 1.05
CTNNA1-205ENST00000517904 IFT140Q96RY7 1462 aa21.58■■□□□ 1.05
CTNNA1-205ENST00000517904 CCDC88BA6NC98 1476 aa21.56■■□□□ 1.04
CTNNA1-205ENST00000517904 TOPBP1Q92547 1522 aa21.53■■□□□ 1.04
CTNNA1-205ENST00000517904 ARHGEF11O15085 1522 aa21.52■■□□□ 1.04
CTNNA1-205ENST00000517904 EIF4G3O43432 1585 aaKnown RBP21.48■■□□□ 1.03
CTNNA1-205ENST00000517904 DNMBPQ6XZF7 1577 aa21.41■■□□□ 1.02
CTNNA1-205ENST00000517904 ABCC8Q09428 1581 aa21.4■■□□□ 1.02
CTNNA1-205ENST00000517904 TARBP1Q13395 1621 aaKnown RBP21.38■■□□□ 1.01
CTNNA1-205ENST00000517904 CHD1O14646 1710 aa21.37■■□□□ 1.01
CTNNA1-205ENST00000517904 AQRO60306 1485 aaKnown RBP eCLIP21.37■■□□□ 1.018e-7■■■■■ 28.7
CTNNA1-205ENST00000517904 CYB5RLQ6IPT4 315 aa21.35■■□□□ 1.01
CTNNA1-205ENST00000517904 POLA1P09884 1462 aaPredicted RBP21.3■■□□□ 1
CTNNA1-205ENST00000517904 ARAP1Q96P48 1450 aa21.3■■□□□ 1
CTNNA1-205ENST00000517904 FBLN2P98095 1184 aa21.25■□□□□ 0.99
CTNNA1-205ENST00000517904 RAD54L2Q9Y4B4 1467 aa21.23■□□□□ 0.99
CTNNA1-205ENST00000517904 TRHP20396 242 aaPredicted RBP21.19■□□□□ 0.98
CTNNA1-205ENST00000517904 TDRD9Q8NDG6 1382 aaKnown RBP21.19■□□□□ 0.98
CTNNA1-205ENST00000517904 SOGA1O94964 1423 aa21.16■□□□□ 0.98
CTNNA1-205ENST00000517904 SNAPC4Q5SXM2 1469 aa21.13■□□□□ 0.97
CTNNA1-205ENST00000517904 CLASP1Q7Z460 1538 aa21.12■□□□□ 0.97
CTNNA1-205ENST00000517904 FGD5Q6ZNL6 1462 aa21.11■□□□□ 0.97
CTNNA1-205ENST00000517904 WDR97A6NE52 1622 aa21.09■□□□□ 0.97
CTNNA1-205ENST00000517904 CUX1P39880 1505 aa21.06■□□□□ 0.96
CTNNA1-205ENST00000517904 MAGI1Q96QZ7 1491 aaPredicted RBP21.05■□□□□ 0.96
CTNNA1-205ENST00000517904 CHMP7Q8WUX9 453 aaPredicted RBP21.04■□□□□ 0.96
CTNNA1-205ENST00000517904 SYNJ1O43426 1573 aa21.04■□□□□ 0.96
CTNNA1-205ENST00000517904 GRIN2BQ13224 1484 aa21.01■□□□□ 0.95
CTNNA1-205ENST00000517904 SYNJ2O15056 1496 aa21■□□□□ 0.95
CTNNA1-205ENST00000517904 CHIC1Q5VXU3 224 aa20.94■□□□□ 0.94
CTNNA1-205ENST00000517904 PBRM1Q86U86 1689 aa20.93■□□□□ 0.94
CTNNA1-205ENST00000517904 GAPVD1Q14C86 1478 aa20.91■□□□□ 0.94
CTNNA1-205ENST00000517904 ABCA5Q8WWZ7 1642 aa20.86■□□□□ 0.93
CTNNA1-205ENST00000517904 ABCA10Q8WWZ4 1543 aa20.84■□□□□ 0.93
CTNNA1-205ENST00000517904 ERCC6L2Q5T890 1561 aa20.8■□□□□ 0.92
CTNNA1-205ENST00000517904 GRIN2AQ12879 1464 aa20.76■□□□□ 0.91
CTNNA1-205ENST00000517904 ADAMTS12P58397 1594 aa20.72■□□□□ 0.91
CTNNA1-205ENST00000517904 CEP170Q5SW79 1584 aa20.72■□□□□ 0.91
CTNNA1-205ENST00000517904 NUP160Q12769 1436 aa20.71■□□□□ 0.91
CTNNA1-205ENST00000517904 WRNQ14191 1432 aaPredicted RBP eCLIP20.68■□□□□ 0.9
CTNNA1-205ENST00000517904 SHROOM2Q13796 1616 aa20.66■□□□□ 0.9
CTNNA1-205ENST00000517904 TOP2BQ02880 1626 aa20.63■□□□□ 0.89
CTNNA1-205ENST00000517904 BIVM-ERCC5R4GMW8 1640 aa20.63■□□□□ 0.89
CTNNA1-205ENST00000517904 FHAD1B1AJZ9 1412 aa20.62■□□□□ 0.89
CTNNA1-205ENST00000517904 SUPT5HO00267 1087 aaKnown RBP20.58■□□□□ 0.89
CTNNA1-205ENST00000517904 ERICH3Q5RHP9 1530 aa20.57■□□□□ 0.88
CTNNA1-205ENST00000517904 KIF13AQ9H1H9 1805 aa20.56■□□□□ 0.88
CTNNA1-205ENST00000517904 PRG4Q92954 1404 aaPredicted RBP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms