RNA–Protein interactions for RNA: ENST00000517352.1

TNFRSF11B-202, Transcript of TNF receptor superfamily member 11b, humanhuman

TSL 1 (best)

Gene TNFRSF11B, Length 1,144 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF11B-202ENST00000517352 NISCHQ9Y2I1 1504 aa17.99■□□□□ 0.47
TNFRSF11B-202ENST00000517352 AEBP2Q6ZN18 517 aaPredicted RBP17.19■□□□□ 0.34
TNFRSF11B-202ENST00000517352 CHIC1Q5VXU3 224 aa16.45■□□□□ 0.22
TNFRSF11B-202ENST00000517352 ABCC9O60706 1549 aa16.35■□□□□ 0.21
TNFRSF11B-202ENST00000517352 CCDC180Q9P1Z9 1646 aa16.07■□□□□ 0.16
TNFRSF11B-202ENST00000517352 DCAF8L2P0C7V8 631 aa15.62■□□□□ 0.09
TNFRSF11B-202ENST00000517352 RB1CC1Q8TDY2 1594 aa15.47■□□□□ 0.07
TNFRSF11B-202ENST00000517352 DNAJC5BQ9UF47 199 aa15.33■□□□□ 0.04
TNFRSF11B-202ENST00000517352 NACADO15069 1562 aa15.32■□□□□ 0.04
TNFRSF11B-202ENST00000517352 PABPN1Q86U42 306 aaKnown RBP eCLIP15.31■□□□□ 0.04
TNFRSF11B-202ENST00000517352 MYO15BQ96JP2 1530 aa15.01□□□□□ -0.01
TNFRSF11B-202ENST00000517352 UNC13AQ9UPW8 1703 aa14.87□□□□□ -0.03
TNFRSF11B-202ENST00000517352 BICRAQ9NZM4 1560 aa14.85□□□□□ -0.03
TNFRSF11B-202ENST00000517352 ZCCHC6Q5VYS8 1495 aaKnown RBP14.85□□□□□ -0.03
TNFRSF11B-202ENST00000517352 DCAF1Q9Y4B6 1507 aa14.79□□□□□ -0.04
TNFRSF11B-202ENST00000517352 SENP3Q9H4L4 574 aaPredicted RBP14.78□□□□□ -0.04
TNFRSF11B-202ENST00000517352 SCRIBQ14160 1630 aa14.77□□□□□ -0.05
TNFRSF11B-202ENST00000517352 SHROOM4Q9ULL8 1493 aa14.75□□□□□ -0.05
TNFRSF11B-202ENST00000517352 CECR2Q9BXF3 1484 aa14.73□□□□□ -0.05
TNFRSF11B-202ENST00000517352 CC2D2AQ9P2K1 1620 aa14.65□□□□□ -0.06
TNFRSF11B-202ENST00000517352 EIF4G1Q04637 1599 aaKnown RBP14.61□□□□□ -0.07
TNFRSF11B-202ENST00000517352 PHF23Q9BUL5 403 aaPredicted RBP14.53□□□□□ -0.08
TNFRSF11B-202ENST00000517352 ERCC6Q03468 1493 aa14.22□□□□□ -0.13
TNFRSF11B-202ENST00000517352 DNAJC5Q9H3Z4 198 aa14.21□□□□□ -0.13
TNFRSF11B-202ENST00000517352 NCAPD3P42695 1498 aa14.15□□□□□ -0.14
TNFRSF11B-202ENST00000517352 ATAD2BQ9ULI0 1458 aa14.1□□□□□ -0.15
TNFRSF11B-202ENST00000517352 SMARCA2P51531 1590 aa14.08□□□□□ -0.16
TNFRSF11B-202ENST00000517352 CUX2O14529 1486 aa14.06□□□□□ -0.16
TNFRSF11B-202ENST00000517352 BAZ1BQ9UIG0 1483 aaKnown RBP14.04□□□□□ -0.16
TNFRSF11B-202ENST00000517352 SMARCA4P51532 1647 aa14.01□□□□□ -0.17
TNFRSF11B-202ENST00000517352 BAZ1AQ9NRL2 1556 aaPredicted RBP14□□□□□ -0.17
TNFRSF11B-202ENST00000517352 HMGXB3Q12766 1538 aa13.99□□□□□ -0.17
TNFRSF11B-202ENST00000517352 NESP48681 1621 aa13.94□□□□□ -0.18
TNFRSF11B-202ENST00000517352 PDS5BQ9NTI5 1447 aa13.9□□□□□ -0.19
TNFRSF11B-202ENST00000517352 MROH2BQ7Z745 1585 aa13.85□□□□□ -0.19
TNFRSF11B-202ENST00000517352 LAMC3Q9Y6N6 1575 aa13.83□□□□□ -0.19
TNFRSF11B-202ENST00000517352 PEG3Q9GZU2 1588 aa13.81□□□□□ -0.2
TNFRSF11B-202ENST00000517352 CADPSQ9ULU8 1353 aa13.79□□□□□ -0.2
TNFRSF11B-202ENST00000517352 TRIM41Q8WV44 630 aa13.74□□□□□ -0.21
TNFRSF11B-202ENST00000517352 THOC2Q8NI27 1593 aaKnown RBP13.71□□□□□ -0.22
TNFRSF11B-202ENST00000517352 MRC2Q9UBG0 1479 aa13.69□□□□□ -0.22
TNFRSF11B-202ENST00000517352 FOXD1Q16676 465 aa13.68□□□□□ -0.22
TNFRSF11B-202ENST00000517352 KIF21AQ7Z4S6 1674 aa13.67□□□□□ -0.22
TNFRSF11B-202ENST00000517352 CEP164Q9UPV0 1460 aa13.66□□□□□ -0.22
TNFRSF11B-202ENST00000517352 WIZO95785 1651 aa13.66□□□□□ -0.22
TNFRSF11B-202ENST00000517352 FANCD2Q9BXW9 1451 aa13.62□□□□□ -0.23
TNFRSF11B-202ENST00000517352 OSCARQ8IYS5 282 aa13.6□□□□□ -0.23
TNFRSF11B-202ENST00000517352 RSF1Q96T23 1441 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF11B-202ENST00000517352 WDR62O43379 1518 aa13.57□□□□□ -0.24
TNFRSF11B-202ENST00000517352 CFTRP13569 1480 aa13.55□□□□□ -0.24
TNFRSF11B-202ENST00000517352 TOP2AP11388 1531 aaKnown RBP13.51□□□□□ -0.25
TNFRSF11B-202ENST00000517352 URB2Q14146 1524 aaKnown RBP13.43□□□□□ -0.26
TNFRSF11B-202ENST00000517352 FBLN2P98095 1184 aa13.41□□□□□ -0.26
TNFRSF11B-202ENST00000517352 CCDC88BA6NC98 1476 aa13.41□□□□□ -0.26
TNFRSF11B-202ENST00000517352 IFT140Q96RY7 1462 aa13.37□□□□□ -0.27
TNFRSF11B-202ENST00000517352 ABCC8Q09428 1581 aa13.35□□□□□ -0.27
TNFRSF11B-202ENST00000517352 TOPBP1Q92547 1522 aa13.3□□□□□ -0.28
TNFRSF11B-202ENST00000517352 ZNF608Q9ULD9 1512 aaPredicted RBP13.3□□□□□ -0.28
TNFRSF11B-202ENST00000517352 CYB5RLQ6IPT4 315 aa13.3□□□□□ -0.28
TNFRSF11B-202ENST00000517352 TRHP20396 242 aaPredicted RBP13.29□□□□□ -0.28
TNFRSF11B-202ENST00000517352 AQRO60306 1485 aaKnown RBP eCLIP13.24□□□□□ -0.29
TNFRSF11B-202ENST00000517352 CHMP7Q8WUX9 453 aaPredicted RBP13.24□□□□□ -0.29
TNFRSF11B-202ENST00000517352 DNMBPQ6XZF7 1577 aa13.24□□□□□ -0.29
TNFRSF11B-202ENST00000517352 PRDM2Q13029 1718 aa13.22□□□□□ -0.29
TNFRSF11B-202ENST00000517352 SOGA1O94964 1423 aa13.22□□□□□ -0.29
TNFRSF11B-202ENST00000517352 SUPT5HO00267 1087 aaKnown RBP13.21□□□□□ -0.29
TNFRSF11B-202ENST00000517352 PLPPR3Q6T4P5 718 aa13.21□□□□□ -0.29
TNFRSF11B-202ENST00000517352 TDRD9Q8NDG6 1382 aaKnown RBP13.2□□□□□ -0.3
TNFRSF11B-202ENST00000517352 RIMBP3CA6NJZ7 1639 aa13.19□□□□□ -0.3
TNFRSF11B-202ENST00000517352 RIMBP3BA6NNM3 1639 aa13.19□□□□□ -0.3
TNFRSF11B-202ENST00000517352 RIMBP3Q9UFD9 1639 aa13.19□□□□□ -0.3
TNFRSF11B-202ENST00000517352 ARHGEF11O15085 1522 aa13.18□□□□□ -0.3
TNFRSF11B-202ENST00000517352 EIF4G3O43432 1585 aaKnown RBP13.18□□□□□ -0.3
TNFRSF11B-202ENST00000517352 POLA1P09884 1462 aaPredicted RBP13.16□□□□□ -0.3
TNFRSF11B-202ENST00000517352 RAD54L2Q9Y4B4 1467 aa13.16□□□□□ -0.3
TNFRSF11B-202ENST00000517352 FGD5Q6ZNL6 1462 aa13.1□□□□□ -0.31
TNFRSF11B-202ENST00000517352 TARBP1Q13395 1621 aaKnown RBP13.1□□□□□ -0.31
TNFRSF11B-202ENST00000517352 SNAPC4Q5SXM2 1469 aa13.09□□□□□ -0.31
TNFRSF11B-202ENST00000517352 GRIN2BQ13224 1484 aa13.06□□□□□ -0.32
TNFRSF11B-202ENST00000517352 CHD1O14646 1710 aa13.05□□□□□ -0.32
TNFRSF11B-202ENST00000517352 MAGI1Q96QZ7 1491 aaPredicted RBP13.04□□□□□ -0.32
TNFRSF11B-202ENST00000517352 ARAP1Q96P48 1450 aa13.03□□□□□ -0.32
TNFRSF11B-202ENST00000517352 SYNJ1O43426 1573 aa13.03□□□□□ -0.32
TNFRSF11B-202ENST00000517352 SYNJ2O15056 1496 aa13.01□□□□□ -0.33
TNFRSF11B-202ENST00000517352 GAPVD1Q14C86 1478 aa13.01□□□□□ -0.33
TNFRSF11B-202ENST00000517352 CUX1P39880 1505 aa13.01□□□□□ -0.33
TNFRSF11B-202ENST00000517352 WDR97A6NE52 1622 aa13□□□□□ -0.33
TNFRSF11B-202ENST00000517352 WRNQ14191 1432 aaPredicted RBP eCLIP12.97□□□□□ -0.33
TNFRSF11B-202ENST00000517352 CLASP1Q7Z460 1538 aa12.91□□□□□ -0.34
TNFRSF11B-202ENST00000517352 ABCA10Q8WWZ4 1543 aa12.91□□□□□ -0.34
TNFRSF11B-202ENST00000517352 MSH5O43196 834 aa12.89□□□□□ -0.35
TNFRSF11B-202ENST00000517352 NPM1P06748 294 aaKnown RBP eCLIP12.89□□□□□ -0.35
TNFRSF11B-202ENST00000517352 GRIN2AQ12879 1464 aa12.86□□□□□ -0.35
TNFRSF11B-202ENST00000517352 PIAS4Q8N2W9 510 aaPredicted RBP12.86□□□□□ -0.35
TNFRSF11B-202ENST00000517352 PBRM1Q86U86 1689 aa12.85□□□□□ -0.35
TNFRSF11B-202ENST00000517352 FHAD1B1AJZ9 1412 aa12.85□□□□□ -0.35
TNFRSF11B-202ENST00000517352 ABCA5Q8WWZ7 1642 aa12.81□□□□□ -0.36
TNFRSF11B-202ENST00000517352 JPH4Q96JJ6 628 aa12.81□□□□□ -0.36
TNFRSF11B-202ENST00000517352 TOP2BQ02880 1626 aa12.78□□□□□ -0.36
TNFRSF11B-202ENST00000517352 PPP6R1Q9UPN7 881 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms