RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 NISCHQ9Y2I1 1504 aa28.46■■■□□ 2.15
LIMCH1-221ENST00000515785 ABCC9O60706 1549 aa26.43■■□□□ 1.82
LIMCH1-221ENST00000515785 CCDC180Q9P1Z9 1646 aa25.71■■□□□ 1.71
LIMCH1-221ENST00000515785 DNAJC5BQ9UF47 199 aa25.34■■□□□ 1.65
LIMCH1-221ENST00000515785 AEBP2Q6ZN18 517 aaPredicted RBP25.17■■□□□ 1.62
LIMCH1-221ENST00000515785 RB1CC1Q8TDY2 1594 aa24.8■■□□□ 1.56
LIMCH1-221ENST00000515785 PABPN1Q86U42 306 aaKnown RBP eCLIP24.59■■□□□ 1.53
LIMCH1-221ENST00000515785 DCAF8L2P0C7V8 631 aa24.53■■□□□ 1.52
LIMCH1-221ENST00000515785 NACADO15069 1562 aa24.46■■□□□ 1.51
LIMCH1-221ENST00000515785 UNC13AQ9UPW8 1703 aa24.29■■□□□ 1.48
LIMCH1-221ENST00000515785 BICRAQ9NZM4 1560 aa24.12■■□□□ 1.45
LIMCH1-221ENST00000515785 MYO15BQ96JP2 1530 aa23.84■■□□□ 1.41
LIMCH1-221ENST00000515785 CECR2Q9BXF3 1484 aa23.81■■□□□ 1.4
LIMCH1-221ENST00000515785 CC2D2AQ9P2K1 1620 aa23.79■■□□□ 1.4
LIMCH1-221ENST00000515785 CHIC1Q5VXU3 224 aa23.73■■□□□ 1.39
LIMCH1-221ENST00000515785 DNAJC5Q9H3Z4 198 aa23.62■■□□□ 1.37
LIMCH1-221ENST00000515785 SHROOM4Q9ULL8 1493 aa23.56■■□□□ 1.36
LIMCH1-221ENST00000515785 EIF4G1Q04637 1599 aaKnown RBP23.56■■□□□ 1.36
LIMCH1-221ENST00000515785 SCRIBQ14160 1630 aa23.52■■□□□ 1.36
LIMCH1-221ENST00000515785 ZCCHC6Q5VYS8 1495 aaKnown RBP23.41■■□□□ 1.34
LIMCH1-221ENST00000515785 DCAF1Q9Y4B6 1507 aa23.36■■□□□ 1.33
LIMCH1-221ENST00000515785 CUX2O14529 1486 aa22.87■■□□□ 1.25
LIMCH1-221ENST00000515785 ERCC6Q03468 1493 aa22.83■■□□□ 1.25
LIMCH1-221ENST00000515785 NCAPD3P42695 1498 aa22.6■■□□□ 1.21
LIMCH1-221ENST00000515785 NESP48681 1621 aa22.54■■□□□ 1.2
LIMCH1-221ENST00000515785 ATAD2BQ9ULI0 1458 aa22.48■■□□□ 1.19
LIMCH1-221ENST00000515785 TRIM41Q8WV44 630 aa22.48■■□□□ 1.19
LIMCH1-221ENST00000515785 SMARCA2P51531 1590 aa22.36■■□□□ 1.17
LIMCH1-221ENST00000515785 HMGXB3Q12766 1538 aa22.34■■□□□ 1.17
LIMCH1-221ENST00000515785 THOC2Q8NI27 1593 aaKnown RBP22.32■■□□□ 1.16
LIMCH1-221ENST00000515785 SMARCA4P51532 1647 aa22.31■■□□□ 1.16
LIMCH1-221ENST00000515785 BAZ1BQ9UIG0 1483 aaKnown RBP22.25■■□□□ 1.15
LIMCH1-221ENST00000515785 KIF21AQ7Z4S6 1674 aa22.2■■□□□ 1.14
LIMCH1-221ENST00000515785 LAMC3Q9Y6N6 1575 aa22.17■■□□□ 1.14
LIMCH1-221ENST00000515785 PDS5BQ9NTI5 1447 aa22.11■■□□□ 1.13
LIMCH1-221ENST00000515785 BAZ1AQ9NRL2 1556 aaPredicted RBP22.1■■□□□ 1.13
LIMCH1-221ENST00000515785 PEG3Q9GZU2 1588 aa22.01■■□□□ 1.11
LIMCH1-221ENST00000515785 MROH2BQ7Z745 1585 aa21.97■■□□□ 1.11
LIMCH1-221ENST00000515785 MRC2Q9UBG0 1479 aa21.95■■□□□ 1.1
LIMCH1-221ENST00000515785 CADPSQ9ULU8 1353 aa21.93■■□□□ 1.1
LIMCH1-221ENST00000515785 WDR62O43379 1518 aa21.87■■□□□ 1.09
LIMCH1-221ENST00000515785 OSCARQ8IYS5 282 aa21.87■■□□□ 1.09
LIMCH1-221ENST00000515785 SENP3Q9H4L4 574 aaPredicted RBP21.83■■□□□ 1.09
LIMCH1-221ENST00000515785 CEP164Q9UPV0 1460 aa21.75■■□□□ 1.07
LIMCH1-221ENST00000515785 WIZO95785 1651 aa21.7■■□□□ 1.06
LIMCH1-221ENST00000515785 FANCD2Q9BXW9 1451 aa21.69■■□□□ 1.06
LIMCH1-221ENST00000515785 RIMBP3CA6NJZ7 1639 aa21.6■■□□□ 1.05
LIMCH1-221ENST00000515785 RIMBP3BA6NNM3 1639 aa21.6■■□□□ 1.05
LIMCH1-221ENST00000515785 RIMBP3Q9UFD9 1639 aa21.6■■□□□ 1.05
LIMCH1-221ENST00000515785 URB2Q14146 1524 aaKnown RBP21.55■■□□□ 1.04
LIMCH1-221ENST00000515785 CFTRP13569 1480 aa21.52■■□□□ 1.04
LIMCH1-221ENST00000515785 CYB5RLQ6IPT4 315 aa21.46■■□□□ 1.03
LIMCH1-221ENST00000515785 ARHGEF11O15085 1522 aa21.45■■□□□ 1.02
LIMCH1-221ENST00000515785 TRHP20396 242 aaPredicted RBP21.43■■□□□ 1.02
LIMCH1-221ENST00000515785 ZNF608Q9ULD9 1512 aaPredicted RBP21.41■■□□□ 1.02
LIMCH1-221ENST00000515785 IFT140Q96RY7 1462 aa21.32■■□□□ 1
LIMCH1-221ENST00000515785 PHF23Q9BUL5 403 aaPredicted RBP21.31■■□□□ 1
LIMCH1-221ENST00000515785 TOP2AP11388 1531 aaKnown RBP21.3■■□□□ 1
LIMCH1-221ENST00000515785 RSF1Q96T23 1441 aaPredicted RBP21.29■■□□□ 1
LIMCH1-221ENST00000515785 PRDM2Q13029 1718 aa21.26■□□□□ 0.99
LIMCH1-221ENST00000515785 FBLN2P98095 1184 aa21.25■□□□□ 0.99
LIMCH1-221ENST00000515785 CHD1O14646 1710 aa21.21■□□□□ 0.99
LIMCH1-221ENST00000515785 TOPBP1Q92547 1522 aa21.21■□□□□ 0.99
LIMCH1-221ENST00000515785 EIF4G3O43432 1585 aaKnown RBP21.21■□□□□ 0.99
LIMCH1-221ENST00000515785 ARAP1Q96P48 1450 aa21.2■□□□□ 0.98
LIMCH1-221ENST00000515785 AQRO60306 1485 aaKnown RBP eCLIP21.18■□□□□ 0.98
LIMCH1-221ENST00000515785 CCDC88BA6NC98 1476 aa21.14■□□□□ 0.98
LIMCH1-221ENST00000515785 ABCC8Q09428 1581 aa21.08■□□□□ 0.97
LIMCH1-221ENST00000515785 TARBP1Q13395 1621 aaKnown RBP21.06■□□□□ 0.96
LIMCH1-221ENST00000515785 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
LIMCH1-221ENST00000515785 TDRD9Q8NDG6 1382 aaKnown RBP20.97■□□□□ 0.95
LIMCH1-221ENST00000515785 RAD54L2Q9Y4B4 1467 aa20.96■□□□□ 0.95
LIMCH1-221ENST00000515785 POLA1P09884 1462 aaPredicted RBP20.95■□□□□ 0.94
LIMCH1-221ENST00000515785 CHMP7Q8WUX9 453 aaPredicted RBP20.93■□□□□ 0.94
LIMCH1-221ENST00000515785 SOGA1O94964 1423 aa20.9■□□□□ 0.94
LIMCH1-221ENST00000515785 SNAPC4Q5SXM2 1469 aa20.89■□□□□ 0.94
LIMCH1-221ENST00000515785 CLASP1Q7Z460 1538 aa20.88■□□□□ 0.93
LIMCH1-221ENST00000515785 SYNJ1O43426 1573 aa20.83■□□□□ 0.92
LIMCH1-221ENST00000515785 FGD5Q6ZNL6 1462 aa20.76■□□□□ 0.91
LIMCH1-221ENST00000515785 GAPVD1Q14C86 1478 aa20.75■□□□□ 0.91
LIMCH1-221ENST00000515785 MAGI1Q96QZ7 1491 aaPredicted RBP20.75■□□□□ 0.91
LIMCH1-221ENST00000515785 POTEDQ86YR6 584 aa20.73■□□□□ 0.91
LIMCH1-221ENST00000515785 GRIN2BQ13224 1484 aa20.73■□□□□ 0.91
LIMCH1-221ENST00000515785 SYNJ2O15056 1496 aa20.71■□□□□ 0.91
LIMCH1-221ENST00000515785 WDR97A6NE52 1622 aa20.69■□□□□ 0.9
LIMCH1-221ENST00000515785 CUX1P39880 1505 aa20.65■□□□□ 0.9
LIMCH1-221ENST00000515785 PBRM1Q86U86 1689 aa20.63■□□□□ 0.89
LIMCH1-221ENST00000515785 ERCC6L2Q5T890 1561 aa20.61■□□□□ 0.89
LIMCH1-221ENST00000515785 CEP170Q5SW79 1584 aa20.48■□□□□ 0.87
LIMCH1-221ENST00000515785 KIF13AQ9H1H9 1805 aa20.46■□□□□ 0.87
LIMCH1-221ENST00000515785 ABCA5Q8WWZ7 1642 aa20.46■□□□□ 0.87
LIMCH1-221ENST00000515785 GRIN2AQ12879 1464 aa20.46■□□□□ 0.87
LIMCH1-221ENST00000515785 ABCA10Q8WWZ4 1543 aa20.44■□□□□ 0.86
LIMCH1-221ENST00000515785 NUP160Q12769 1436 aa20.38■□□□□ 0.85
LIMCH1-221ENST00000515785 FAM69CQ0P6D2 419 aa20.37■□□□□ 0.85
LIMCH1-221ENST00000515785 ADAMTS12P58397 1594 aa20.36■□□□□ 0.85
LIMCH1-221ENST00000515785 SHROOM2Q13796 1616 aa20.35■□□□□ 0.85
LIMCH1-221ENST00000515785 FOXD1Q16676 465 aa20.34■□□□□ 0.85
LIMCH1-221ENST00000515785 ILDR1Q86SU0 546 aaPredicted RBP20.32■□□□□ 0.84
LIMCH1-221ENST00000515785 PRG4Q92954 1404 aaPredicted RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms