RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 NISCHQ9Y2I1 1504 aa31.34■■■□□ 2.61
CLCN3-210ENST00000515420 CCDC180Q9P1Z9 1646 aa28■■■□□ 2.07
CLCN3-210ENST00000515420 ABCC9O60706 1549 aa27.32■■□□□ 1.96
CLCN3-210ENST00000515420 RB1CC1Q8TDY2 1594 aa26.35■■□□□ 1.81
CLCN3-210ENST00000515420 NACADO15069 1562 aa26.31■■□□□ 1.8
CLCN3-210ENST00000515420 MYO15BQ96JP2 1530 aa26.18■■□□□ 1.78
CLCN3-210ENST00000515420 ZCCHC6Q5VYS8 1495 aaKnown RBP26.11■■□□□ 1.77
CLCN3-210ENST00000515420 DCAF8L2P0C7V8 631 aa26.05■■□□□ 1.76
CLCN3-210ENST00000515420 DCAF1Q9Y4B6 1507 aa26■■□□□ 1.75
CLCN3-210ENST00000515420 UNC13AQ9UPW8 1703 aa25.75■■□□□ 1.71
CLCN3-210ENST00000515420 BICRAQ9NZM4 1560 aa25.52■■□□□ 1.68
CLCN3-210ENST00000515420 PABPN1Q86U42 306 aaKnown RBP eCLIP25.45■■□□□ 1.66
CLCN3-210ENST00000515420 SCRIBQ14160 1630 aa25.41■■□□□ 1.66
CLCN3-210ENST00000515420 SHROOM4Q9ULL8 1493 aa25.38■■□□□ 1.65
CLCN3-210ENST00000515420 DNAJC5BQ9UF47 199 aa25.12■■□□□ 1.61
CLCN3-210ENST00000515420 EIF4G1Q04637 1599 aaKnown RBP24.87■■□□□ 1.57
CLCN3-210ENST00000515420 CC2D2AQ9P2K1 1620 aa24.78■■□□□ 1.56
CLCN3-210ENST00000515420 CECR2Q9BXF3 1484 aa24.6■■□□□ 1.53
CLCN3-210ENST00000515420 AEBP2Q6ZN18 517 aaPredicted RBP24.49■■□□□ 1.51
CLCN3-210ENST00000515420 SMARCA4P51532 1647 aa24.35■■□□□ 1.49
CLCN3-210ENST00000515420 BAZ1AQ9NRL2 1556 aaPredicted RBP24.33■■□□□ 1.48
CLCN3-210ENST00000515420 NCAPD3P42695 1498 aa24.26■■□□□ 1.47
CLCN3-210ENST00000515420 SMARCA2P51531 1590 aa24.24■■□□□ 1.47
CLCN3-210ENST00000515420 ATAD2BQ9ULI0 1458 aa24.22■■□□□ 1.47
CLCN3-210ENST00000515420 PEG3Q9GZU2 1588 aa24.17■■□□□ 1.46
CLCN3-210ENST00000515420 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
CLCN3-210ENST00000515420 MROH2BQ7Z745 1585 aa24.11■■□□□ 1.45
CLCN3-210ENST00000515420 BAZ1BQ9UIG0 1483 aaKnown RBP24.02■■□□□ 1.44
CLCN3-210ENST00000515420 WIZO95785 1651 aa23.84■■□□□ 1.41
CLCN3-210ENST00000515420 RSF1Q96T23 1441 aaPredicted RBP23.8■■□□□ 1.4
CLCN3-210ENST00000515420 LAMC3Q9Y6N6 1575 aa23.65■■□□□ 1.38
CLCN3-210ENST00000515420 TOP2AP11388 1531 aaKnown RBP23.64■■□□□ 1.37
CLCN3-210ENST00000515420 NESP48681 1621 aa23.62■■□□□ 1.37
CLCN3-210ENST00000515420 ERCC6Q03468 1493 aa23.6■■□□□ 1.37
CLCN3-210ENST00000515420 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
CLCN3-210ENST00000515420 CUX2O14529 1486 aa23.47■■□□□ 1.35
CLCN3-210ENST00000515420 PDS5BQ9NTI5 1447 aa23.46■■□□□ 1.35
CLCN3-210ENST00000515420 KIF21AQ7Z4S6 1674 aa23.4■■□□□ 1.34
CLCN3-210ENST00000515420 CFTRP13569 1480 aa23.37■■□□□ 1.33
CLCN3-210ENST00000515420 THOC2Q8NI27 1593 aaKnown RBP23.37■■□□□ 1.33
CLCN3-210ENST00000515420 CCDC88BA6NC98 1476 aa23.3■■□□□ 1.32
CLCN3-210ENST00000515420 PRDM2Q13029 1718 aa23.26■■□□□ 1.31
CLCN3-210ENST00000515420 FANCD2Q9BXW9 1451 aa23.24■■□□□ 1.31
CLCN3-210ENST00000515420 CEP164Q9UPV0 1460 aa23.24■■□□□ 1.31
CLCN3-210ENST00000515420 MRC2Q9UBG0 1479 aa23.23■■□□□ 1.31
CLCN3-210ENST00000515420 WDR62O43379 1518 aa23.18■■□□□ 1.3
CLCN3-210ENST00000515420 URB2Q14146 1524 aaKnown RBP23.01■■□□□ 1.27
CLCN3-210ENST00000515420 SUPT5HO00267 1087 aaKnown RBP23■■□□□ 1.27
CLCN3-210ENST00000515420 ABCC8Q09428 1581 aa22.91■■□□□ 1.26
CLCN3-210ENST00000515420 TOPBP1Q92547 1522 aa22.86■■□□□ 1.25
CLCN3-210ENST00000515420 DNMBPQ6XZF7 1577 aa22.85■■□□□ 1.25
CLCN3-210ENST00000515420 CHIC1Q5VXU3 224 aa22.8■■□□□ 1.24
CLCN3-210ENST00000515420 DNAJC5Q9H3Z4 198 aa22.78■■□□□ 1.24
CLCN3-210ENST00000515420 IFT140Q96RY7 1462 aa22.77■■□□□ 1.24
CLCN3-210ENST00000515420 POLA1P09884 1462 aaPredicted RBP22.66■■□□□ 1.22
CLCN3-210ENST00000515420 TARBP1Q13395 1621 aaKnown RBP22.64■■□□□ 1.22
CLCN3-210ENST00000515420 CUX1P39880 1505 aa22.63■■□□□ 1.21
CLCN3-210ENST00000515420 ZNF608Q9ULD9 1512 aaPredicted RBP22.6■■□□□ 1.21
CLCN3-210ENST00000515420 FGD5Q6ZNL6 1462 aa22.58■■□□□ 1.2
CLCN3-210ENST00000515420 EIF4G3O43432 1585 aaKnown RBP22.57■■□□□ 1.2
CLCN3-210ENST00000515420 WDR97A6NE52 1622 aa22.55■■□□□ 1.2
CLCN3-210ENST00000515420 SOGA1O94964 1423 aa22.53■■□□□ 1.2
CLCN3-210ENST00000515420 RAD54L2Q9Y4B4 1467 aa22.5■■□□□ 1.19
CLCN3-210ENST00000515420 BIVM-ERCC5R4GMW8 1640 aa22.47■■□□□ 1.19
CLCN3-210ENST00000515420 WRNQ14191 1432 aaPredicted RBP eCLIP22.46■■□□□ 1.19
CLCN3-210ENST00000515420 AQRO60306 1485 aaKnown RBP eCLIP22.46■■□□□ 1.19
CLCN3-210ENST00000515420 TOP2BQ02880 1626 aa22.46■■□□□ 1.19
CLCN3-210ENST00000515420 SYNJ1O43426 1573 aa22.4■■□□□ 1.18
CLCN3-210ENST00000515420 ABCA10Q8WWZ4 1543 aa22.4■■□□□ 1.18
CLCN3-210ENST00000515420 OSCARQ8IYS5 282 aa22.39■■□□□ 1.17
CLCN3-210ENST00000515420 TDRD9Q8NDG6 1382 aaKnown RBP22.38■■□□□ 1.17
CLCN3-210ENST00000515420 ABCA5Q8WWZ7 1642 aa22.32■■□□□ 1.16
CLCN3-210ENST00000515420 GRIN2BQ13224 1484 aa22.32■■□□□ 1.16
CLCN3-210ENST00000515420 MAGI1Q96QZ7 1491 aaPredicted RBP22.31■■□□□ 1.16
CLCN3-210ENST00000515420 GAPVD1Q14C86 1478 aa22.3■■□□□ 1.16
CLCN3-210ENST00000515420 CHD1O14646 1710 aa22.3■■□□□ 1.16
CLCN3-210ENST00000515420 PBRM1Q86U86 1689 aa22.3■■□□□ 1.16
CLCN3-210ENST00000515420 SNAPC4Q5SXM2 1469 aa22.28■■□□□ 1.16
CLCN3-210ENST00000515420 SYNJ2O15056 1496 aa22.2■■□□□ 1.14
CLCN3-210ENST00000515420 FBLN2P98095 1184 aa22.15■■□□□ 1.14
CLCN3-210ENST00000515420 ERICH3Q5RHP9 1530 aa22.14■■□□□ 1.13
CLCN3-210ENST00000515420 CHMP7Q8WUX9 453 aaPredicted RBP22.13■■□□□ 1.13
CLCN3-210ENST00000515420 ADAMTS12P58397 1594 aa22.11■■□□□ 1.13
CLCN3-210ENST00000515420 CLASP1Q7Z460 1538 aa22.08■■□□□ 1.13
CLCN3-210ENST00000515420 RIMBP3CA6NJZ7 1639 aa22.07■■□□□ 1.12
CLCN3-210ENST00000515420 RIMBP3BA6NNM3 1639 aa22.07■■□□□ 1.12
CLCN3-210ENST00000515420 RIMBP3Q9UFD9 1639 aa22.07■■□□□ 1.12
CLCN3-210ENST00000515420 ARHGEF11O15085 1522 aa22.06■■□□□ 1.12
CLCN3-210ENST00000515420 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
CLCN3-210ENST00000515420 GRIN2AQ12879 1464 aa22.03■■□□□ 1.12
CLCN3-210ENST00000515420 KIF27Q86VH2 1401 aa22■■□□□ 1.11
CLCN3-210ENST00000515420 NUP160Q12769 1436 aa21.96■■□□□ 1.11
CLCN3-210ENST00000515420 CUL7Q14999 1698 aa21.93■■□□□ 1.1
CLCN3-210ENST00000515420 CEP170Q5SW79 1584 aa21.91■■□□□ 1.1
CLCN3-210ENST00000515420 IGF1RP08069 1367 aa21.89■■□□□ 1.1
CLCN3-210ENST00000515420 TRIM41Q8WV44 630 aa21.89■■□□□ 1.09
CLCN3-210ENST00000515420 ARAP1Q96P48 1450 aa21.86■■□□□ 1.09
CLCN3-210ENST00000515420 SHROOM2Q13796 1616 aa21.83■■□□□ 1.08
CLCN3-210ENST00000515420 RUSC2Q8N2Y8 1516 aa21.78■■□□□ 1.08
CLCN3-210ENST00000515420 CARMIL1Q5VZK9 1371 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms