RNA–Protein interactions for RNA: ENST00000515066.6

AP3S1-208, Transcript of adaptor related protein complex 3 subunit sigma 1, humanhuman

TSL 2

Gene AP3S1, Length 1,670 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S1-208ENST00000515066 NISCHQ9Y2I1 1504 aa39.51■■■■□ 3.92
AP3S1-208ENST00000515066 CCDC180Q9P1Z9 1646 aa34.8■■■■□ 3.16
AP3S1-208ENST00000515066 ABCC9O60706 1549 aa33.24■■■□□ 2.91
AP3S1-208ENST00000515066 ZCCHC6Q5VYS8 1495 aaKnown RBP33.12■■■□□ 2.89
AP3S1-208ENST00000515066 DCAF1Q9Y4B6 1507 aa32.72■■■□□ 2.83
AP3S1-208ENST00000515066 DCAF8L2P0C7V8 631 aa32.57■■■□□ 2.8
AP3S1-208ENST00000515066 MYO15BQ96JP2 1530 aa32.54■■■□□ 2.8
AP3S1-208ENST00000515066 NACADO15069 1562 aa32.47■■■□□ 2.79
AP3S1-208ENST00000515066 RB1CC1Q8TDY2 1594 aa32.31■■■□□ 2.76
AP3S1-208ENST00000515066 SCRIBQ14160 1630 aa31.83■■■□□ 2.69
AP3S1-208ENST00000515066 UNC13AQ9UPW8 1703 aa31.78■■■□□ 2.68
AP3S1-208ENST00000515066 SHROOM4Q9ULL8 1493 aa31.71■■■□□ 2.67
AP3S1-208ENST00000515066 BICRAQ9NZM4 1560 aa31.4■■■□□ 2.62
AP3S1-208ENST00000515066 PABPN1Q86U42 306 aaKnown RBP eCLIP31.16■■■□□ 2.58
AP3S1-208ENST00000515066 CECR2Q9BXF3 1484 aa30.73■■■□□ 2.51
AP3S1-208ENST00000515066 BAZ1AQ9NRL2 1556 aaPredicted RBP30.55■■■□□ 2.48
AP3S1-208ENST00000515066 SMARCA4P51532 1647 aa30.53■■■□□ 2.48
AP3S1-208ENST00000515066 MROH2BQ7Z745 1585 aa30.5■■■□□ 2.47
AP3S1-208ENST00000515066 EIF4G1Q04637 1599 aaKnown RBP30.46■■■□□ 2.47
AP3S1-208ENST00000515066 RSF1Q96T23 1441 aaPredicted RBP30.42■■■□□ 2.46
AP3S1-208ENST00000515066 WIZO95785 1651 aa30.25■■■□□ 2.43
AP3S1-208ENST00000515066 PEG3Q9GZU2 1588 aa30.21■■■□□ 2.43
AP3S1-208ENST00000515066 SUPT5HO00267 1087 aaKnown RBP30.2■■■□□ 2.42
AP3S1-208ENST00000515066 CC2D2AQ9P2K1 1620 aa30.14■■■□□ 2.41
AP3S1-208ENST00000515066 ATAD2BQ9ULI0 1458 aa30.11■■■□□ 2.41
AP3S1-208ENST00000515066 SMARCA2P51531 1590 aa30.1■■■□□ 2.41
AP3S1-208ENST00000515066 NCAPD3P42695 1498 aa29.94■■■□□ 2.38
AP3S1-208ENST00000515066 TOP2AP11388 1531 aaKnown RBP29.92■■■□□ 2.38
AP3S1-208ENST00000515066 HMGXB3Q12766 1538 aa29.91■■■□□ 2.38
AP3S1-208ENST00000515066 BAZ1BQ9UIG0 1483 aaKnown RBP29.89■■■□□ 2.37
AP3S1-208ENST00000515066 DNAJC5BQ9UF47 199 aa29.79■■■□□ 2.36
AP3S1-208ENST00000515066 CCDC88BA6NC98 1476 aa29.56■■■□□ 2.32
AP3S1-208ENST00000515066 CFTRP13569 1480 aa29.14■■■□□ 2.25
AP3S1-208ENST00000515066 CADPSQ9ULU8 1353 aa29.09■■■□□ 2.25
AP3S1-208ENST00000515066 PRDM2Q13029 1718 aa29.09■■■□□ 2.25
AP3S1-208ENST00000515066 LAMC3Q9Y6N6 1575 aa29.05■■■□□ 2.24
AP3S1-208ENST00000515066 NESP48681 1621 aa29.04■■■□□ 2.24
AP3S1-208ENST00000515066 FANCD2Q9BXW9 1451 aa28.79■■■□□ 2.2
AP3S1-208ENST00000515066 ABCC8Q09428 1581 aa28.78■■■□□ 2.2
AP3S1-208ENST00000515066 KIF21AQ7Z4S6 1674 aa28.78■■■□□ 2.2
AP3S1-208ENST00000515066 PDS5BQ9NTI5 1447 aa28.75■■■□□ 2.19
AP3S1-208ENST00000515066 CHIC1Q5VXU3 224 aa28.69■■■□□ 2.18
AP3S1-208ENST00000515066 CEP164Q9UPV0 1460 aa28.67■■■□□ 2.18
AP3S1-208ENST00000515066 WRNQ14191 1432 aaPredicted RBP eCLIP28.63■■■□□ 2.17
AP3S1-208ENST00000515066 SYNJ1O43426 1573 aa28.6■■■□□ 2.17
AP3S1-208ENST00000515066 CUX1P39880 1505 aa28.57■■■□□ 2.16
AP3S1-208ENST00000515066 BIVM-ERCC5R4GMW8 1640 aa28.54■■■□□ 2.16
AP3S1-208ENST00000515066 TOP2BQ02880 1626 aa28.53■■■□□ 2.16
AP3S1-208ENST00000515066 ERCC6Q03468 1493 aa28.52■■■□□ 2.16
AP3S1-208ENST00000515066 URB2Q14146 1524 aaKnown RBP28.5■■■□□ 2.15
AP3S1-208ENST00000515066 DNMBPQ6XZF7 1577 aa28.48■■■□□ 2.15
AP3S1-208ENST00000515066 MRC2Q9UBG0 1479 aa28.45■■■□□ 2.15
AP3S1-208ENST00000515066 THOC2Q8NI27 1593 aaKnown RBP28.45■■■□□ 2.14
AP3S1-208ENST00000515066 TOPBP1Q92547 1522 aa28.45■■■□□ 2.14
AP3S1-208ENST00000515066 TRIM41Q8WV44 630 aa28.45■■■□□ 2.14
AP3S1-208ENST00000515066 WDR62O43379 1518 aa28.38■■■□□ 2.13
AP3S1-208ENST00000515066 FGD5Q6ZNL6 1462 aa28.31■■■□□ 2.12
AP3S1-208ENST00000515066 POLA1P09884 1462 aaPredicted RBP28.27■■■□□ 2.12
AP3S1-208ENST00000515066 CUX2O14529 1486 aa28.15■■■□□ 2.1
AP3S1-208ENST00000515066 RAD54L2Q9Y4B4 1467 aa28.14■■■□□ 2.09
AP3S1-208ENST00000515066 WDR97A6NE52 1622 aa28.13■■■□□ 2.09
AP3S1-208ENST00000515066 TARBP1Q13395 1621 aaKnown RBP28.12■■■□□ 2.09
AP3S1-208ENST00000515066 SOGA1O94964 1423 aa28.1■■■□□ 2.09
AP3S1-208ENST00000515066 ABCA10Q8WWZ4 1543 aa28.07■■■□□ 2.08
AP3S1-208ENST00000515066 RUSC2Q8N2Y8 1516 aa28.03■■■□□ 2.08
AP3S1-208ENST00000515066 IFT140Q96RY7 1462 aa28.01■■■□□ 2.07
AP3S1-208ENST00000515066 ABCA5Q8WWZ7 1642 aa27.94■■■□□ 2.06
AP3S1-208ENST00000515066 KIF27Q86VH2 1401 aa27.93■■■□□ 2.06
AP3S1-208ENST00000515066 EEA1Q15075 1411 aa27.92■■■□□ 2.06
AP3S1-208ENST00000515066 ZNF608Q9ULD9 1512 aaPredicted RBP27.89■■■□□ 2.06
AP3S1-208ENST00000515066 FAM9AQ8IZU1 332 aaPredicted RBP27.87■■■□□ 2.05
AP3S1-208ENST00000515066 TDRD9Q8NDG6 1382 aaKnown RBP27.87■■■□□ 2.05
AP3S1-208ENST00000515066 EIF4G3O43432 1585 aaKnown RBP27.84■■■□□ 2.05
AP3S1-208ENST00000515066 GAPVD1Q14C86 1478 aa27.82■■■□□ 2.04
AP3S1-208ENST00000515066 AQRO60306 1485 aaKnown RBP eCLIP27.81■■■□□ 2.04
AP3S1-208ENST00000515066 PBRM1Q86U86 1689 aa27.81■■■□□ 2.04
AP3S1-208ENST00000515066 CSRNP3Q8WYN3 585 aa27.75■■■□□ 2.03
AP3S1-208ENST00000515066 IGF1RP08069 1367 aa27.75■■■□□ 2.03
AP3S1-208ENST00000515066 ERICH3Q5RHP9 1530 aa27.74■■■□□ 2.03
AP3S1-208ENST00000515066 GRIN2BQ13224 1484 aa27.68■■■□□ 2.02
AP3S1-208ENST00000515066 CUL7Q14999 1698 aa27.67■■■□□ 2.02
AP3S1-208ENST00000515066 KIF21BO75037 1637 aa27.66■■■□□ 2.02
AP3S1-208ENST00000515066 PRXQ9BXM0 1461 aa27.66■■■□□ 2.02
AP3S1-208ENST00000515066 ADAMTS12P58397 1594 aa27.59■■■□□ 2.01
AP3S1-208ENST00000515066 CARMIL1Q5VZK9 1371 aa27.58■■■□□ 2.01
AP3S1-208ENST00000515066 SNAPC4Q5SXM2 1469 aa27.57■■■□□ 2
AP3S1-208ENST00000515066 RAPGEF2Q9Y4G8 1499 aa27.56■■■□□ 2
AP3S1-208ENST00000515066 MAGI1Q96QZ7 1491 aaPredicted RBP27.54■■■□□ 2
AP3S1-208ENST00000515066 LOC105371045A0A1W2PR82 267 aa27.52■■■□□ 2
AP3S1-208ENST00000515066 GOLGA3Q08378 1498 aa27.51■■□□□ 1.99
AP3S1-208ENST00000515066 FHAD1B1AJZ9 1412 aa27.5■■□□□ 1.99
AP3S1-208ENST00000515066 EHMT2Q96KQ7 1210 aa27.46■■□□□ 1.99
AP3S1-208ENST00000515066 SYNJ2O15056 1496 aa27.42■■□□□ 1.98
AP3S1-208ENST00000515066 CHD1O14646 1710 aa27.37■■□□□ 1.97
AP3S1-208ENST00000515066 GRIN2AQ12879 1464 aa27.37■■□□□ 1.97
AP3S1-208ENST00000515066 CTTNBP2Q8WZ74 1663 aa27.33■■□□□ 1.96
AP3S1-208ENST00000515066 TNIKQ9UKE5 1360 aa27.31■■□□□ 1.96
AP3S1-208ENST00000515066 UBTFP17480 764 aaKnown RBP27.3■■□□□ 1.96
AP3S1-208ENST00000515066 CHMP7Q8WUX9 453 aaPredicted RBP27.27■■□□□ 1.96
AP3S1-208ENST00000515066 CEP170Q5SW79 1584 aa27.25■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms