RNA–Protein interactions for RNA: ENST00000514534.1

DDR1-276, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 3

Gene DDR1, Length 566 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-276ENST00000514534 NISCHQ9Y2I1 1504 aa25.98■■□□□ 1.75
DDR1-276ENST00000514534 ABCC9O60706 1549 aa23.77■■□□□ 1.4
DDR1-276ENST00000514534 CCDC180Q9P1Z9 1646 aa23.53■■□□□ 1.36
DDR1-276ENST00000514534 RB1CC1Q8TDY2 1594 aa22.55■■□□□ 1.2
DDR1-276ENST00000514534 DNAJC5BQ9UF47 199 aa22.52■■□□□ 1.2
DDR1-276ENST00000514534 NACADO15069 1562 aa22.31■■□□□ 1.16
DDR1-276ENST00000514534 DCAF8L2P0C7V8 631 aa22.05■■□□□ 1.12
DDR1-276ENST00000514534 PABPN1Q86U42 306 aaKnown RBP eCLIP22.04■■□□□ 1.12
DDR1-276ENST00000514534 UNC13AQ9UPW8 1703 aa22.03■■□□□ 1.12
DDR1-276ENST00000514534 MYO15BQ96JP2 1530 aa21.89■■□□□ 1.09
DDR1-276ENST00000514534 BICRAQ9NZM4 1560 aa21.83■■□□□ 1.09
DDR1-276ENST00000514534 SHROOM4Q9ULL8 1493 aa21.59■■□□□ 1.05
DDR1-276ENST00000514534 CC2D2AQ9P2K1 1620 aa21.49■■□□□ 1.03
DDR1-276ENST00000514534 DCAF1Q9Y4B6 1507 aa21.48■■□□□ 1.03
DDR1-276ENST00000514534 ZCCHC6Q5VYS8 1495 aaKnown RBP21.46■■□□□ 1.03
DDR1-276ENST00000514534 CECR2Q9BXF3 1484 aa21.46■■□□□ 1.03
DDR1-276ENST00000514534 EIF4G1Q04637 1599 aaKnown RBP21.36■■□□□ 1.01
DDR1-276ENST00000514534 SCRIBQ14160 1630 aa21.35■■□□□ 1.01
DDR1-276ENST00000514534 DNAJC5Q9H3Z4 198 aa21■□□□□ 0.95
DDR1-276ENST00000514534 AEBP2Q6ZN18 517 aaPredicted RBP20.78■□□□□ 0.92
DDR1-276ENST00000514534 CUX2O14529 1486 aa20.69■□□□□ 0.9
DDR1-276ENST00000514534 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
DDR1-276ENST00000514534 NCAPD3P42695 1498 aa20.56■□□□□ 0.88
DDR1-276ENST00000514534 ATAD2BQ9ULI0 1458 aa20.44■□□□□ 0.86
DDR1-276ENST00000514534 SMARCA2P51531 1590 aa20.42■□□□□ 0.86
DDR1-276ENST00000514534 HMGXB3Q12766 1538 aa20.41■□□□□ 0.86
DDR1-276ENST00000514534 SMARCA4P51532 1647 aa20.36■□□□□ 0.85
DDR1-276ENST00000514534 NESP48681 1621 aa20.3■□□□□ 0.84
DDR1-276ENST00000514534 BAZ1BQ9UIG0 1483 aaKnown RBP20.24■□□□□ 0.83
DDR1-276ENST00000514534 THOC2Q8NI27 1593 aaKnown RBP20.22■□□□□ 0.83
DDR1-276ENST00000514534 BAZ1AQ9NRL2 1556 aaPredicted RBP20.22■□□□□ 0.83
DDR1-276ENST00000514534 LAMC3Q9Y6N6 1575 aa20.19■□□□□ 0.82
DDR1-276ENST00000514534 PEG3Q9GZU2 1588 aa20.17■□□□□ 0.82
DDR1-276ENST00000514534 KIF21AQ7Z4S6 1674 aa20.09■□□□□ 0.81
DDR1-276ENST00000514534 PDS5BQ9NTI5 1447 aa20.08■□□□□ 0.8
DDR1-276ENST00000514534 MROH2BQ7Z745 1585 aa19.98■□□□□ 0.79
DDR1-276ENST00000514534 TRIM41Q8WV44 630 aa19.93■□□□□ 0.78
DDR1-276ENST00000514534 CADPSQ9ULU8 1353 aa19.92■□□□□ 0.78
DDR1-276ENST00000514534 MRC2Q9UBG0 1479 aa19.91■□□□□ 0.78
DDR1-276ENST00000514534 WDR62O43379 1518 aa19.87■□□□□ 0.77
DDR1-276ENST00000514534 CHIC1Q5VXU3 224 aa19.86■□□□□ 0.77
DDR1-276ENST00000514534 CEP164Q9UPV0 1460 aa19.77■□□□□ 0.76
DDR1-276ENST00000514534 WIZO95785 1651 aa19.75■□□□□ 0.75
DDR1-276ENST00000514534 FANCD2Q9BXW9 1451 aa19.69■□□□□ 0.74
DDR1-276ENST00000514534 OSCARQ8IYS5 282 aa19.65■□□□□ 0.74
DDR1-276ENST00000514534 CFTRP13569 1480 aa19.61■□□□□ 0.73
DDR1-276ENST00000514534 URB2Q14146 1524 aaKnown RBP19.52■□□□□ 0.72
DDR1-276ENST00000514534 TOP2AP11388 1531 aaKnown RBP19.5■□□□□ 0.71
DDR1-276ENST00000514534 PRDM2Q13029 1718 aa19.48■□□□□ 0.71
DDR1-276ENST00000514534 RSF1Q96T23 1441 aaPredicted RBP19.44■□□□□ 0.7
DDR1-276ENST00000514534 RIMBP3CA6NJZ7 1639 aa19.43■□□□□ 0.7
DDR1-276ENST00000514534 RIMBP3BA6NNM3 1639 aa19.43■□□□□ 0.7
DDR1-276ENST00000514534 RIMBP3Q9UFD9 1639 aa19.43■□□□□ 0.7
DDR1-276ENST00000514534 IFT140Q96RY7 1462 aa19.38■□□□□ 0.69
DDR1-276ENST00000514534 ARHGEF11O15085 1522 aa19.34■□□□□ 0.69
DDR1-276ENST00000514534 ZNF608Q9ULD9 1512 aaPredicted RBP19.32■□□□□ 0.68
DDR1-276ENST00000514534 TOPBP1Q92547 1522 aa19.29■□□□□ 0.68
DDR1-276ENST00000514534 ABCC8Q09428 1581 aa19.27■□□□□ 0.68
DDR1-276ENST00000514534 EIF4G3O43432 1585 aaKnown RBP19.25■□□□□ 0.67
DDR1-276ENST00000514534 CCDC88BA6NC98 1476 aa19.25■□□□□ 0.67
DDR1-276ENST00000514534 DNMBPQ6XZF7 1577 aa19.2■□□□□ 0.66
DDR1-276ENST00000514534 CYB5RLQ6IPT4 315 aa19.19■□□□□ 0.66
DDR1-276ENST00000514534 CHD1O14646 1710 aa19.19■□□□□ 0.66
DDR1-276ENST00000514534 TARBP1Q13395 1621 aaKnown RBP19.14■□□□□ 0.65
DDR1-276ENST00000514534 AQRO60306 1485 aaKnown RBP eCLIP19.11■□□□□ 0.65
DDR1-276ENST00000514534 TRHP20396 242 aaPredicted RBP19.11■□□□□ 0.65
DDR1-276ENST00000514534 ARAP1Q96P48 1450 aa19.1■□□□□ 0.65
DDR1-276ENST00000514534 FBLN2P98095 1184 aa19.07■□□□□ 0.64
DDR1-276ENST00000514534 POLA1P09884 1462 aaPredicted RBP19.05■□□□□ 0.64
DDR1-276ENST00000514534 WDR97A6NE52 1622 aa19■□□□□ 0.63
DDR1-276ENST00000514534 SOGA1O94964 1423 aa18.97■□□□□ 0.63
DDR1-276ENST00000514534 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
DDR1-276ENST00000514534 TDRD9Q8NDG6 1382 aaKnown RBP18.94■□□□□ 0.62
DDR1-276ENST00000514534 SYNJ1O43426 1573 aa18.94■□□□□ 0.62
DDR1-276ENST00000514534 CLASP1Q7Z460 1538 aa18.94■□□□□ 0.62
DDR1-276ENST00000514534 SNAPC4Q5SXM2 1469 aa18.93■□□□□ 0.62
DDR1-276ENST00000514534 MAGI1Q96QZ7 1491 aaPredicted RBP18.9■□□□□ 0.62
DDR1-276ENST00000514534 CHMP7Q8WUX9 453 aaPredicted RBP18.9■□□□□ 0.62
DDR1-276ENST00000514534 FGD5Q6ZNL6 1462 aa18.89■□□□□ 0.61
DDR1-276ENST00000514534 GRIN2BQ13224 1484 aa18.86■□□□□ 0.61
DDR1-276ENST00000514534 SYNJ2O15056 1496 aa18.84■□□□□ 0.61
DDR1-276ENST00000514534 CUX1P39880 1505 aa18.8■□□□□ 0.6
DDR1-276ENST00000514534 PBRM1Q86U86 1689 aa18.79■□□□□ 0.6
DDR1-276ENST00000514534 GAPVD1Q14C86 1478 aa18.77■□□□□ 0.59
DDR1-276ENST00000514534 ABCA5Q8WWZ7 1642 aa18.68■□□□□ 0.58
DDR1-276ENST00000514534 ABCA10Q8WWZ4 1543 aa18.68■□□□□ 0.58
DDR1-276ENST00000514534 GRIN2AQ12879 1464 aa18.61■□□□□ 0.57
DDR1-276ENST00000514534 CEP170Q5SW79 1584 aa18.57■□□□□ 0.56
DDR1-276ENST00000514534 ERCC6L2Q5T890 1561 aa18.57■□□□□ 0.56
DDR1-276ENST00000514534 ADAMTS12P58397 1594 aa18.56■□□□□ 0.56
DDR1-276ENST00000514534 NUP160Q12769 1436 aa18.56■□□□□ 0.56
DDR1-276ENST00000514534 WRNQ14191 1432 aaPredicted RBP eCLIP18.53■□□□□ 0.56
DDR1-276ENST00000514534 SHROOM2Q13796 1616 aa18.52■□□□□ 0.56
DDR1-276ENST00000514534 FHAD1B1AJZ9 1412 aa18.49■□□□□ 0.55
DDR1-276ENST00000514534 KIF13AQ9H1H9 1805 aa18.49■□□□□ 0.55
DDR1-276ENST00000514534 BIVM-ERCC5R4GMW8 1640 aa18.47■□□□□ 0.55
DDR1-276ENST00000514534 ERICH3Q5RHP9 1530 aa18.45■□□□□ 0.54
DDR1-276ENST00000514534 TOP2BQ02880 1626 aa18.45■□□□□ 0.54
DDR1-276ENST00000514534 PRG4Q92954 1404 aaPredicted RBP18.4■□□□□ 0.54
DDR1-276ENST00000514534 JPH4Q96JJ6 628 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms