RNA–Protein interactions for RNA: ENST00000513996.5

HERC4-214, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 944 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-214ENST00000513996 NISCHQ9Y2I1 1504 aa21.48■■□□□ 1.03
HERC4-214ENST00000513996 AEBP2Q6ZN18 517 aaPredicted RBP20.38■□□□□ 0.85
HERC4-214ENST00000513996 CHIC1Q5VXU3 224 aa19.68■□□□□ 0.74
HERC4-214ENST00000513996 CCDC180Q9P1Z9 1646 aa19.05■□□□□ 0.64
HERC4-214ENST00000513996 ABCC9O60706 1549 aa18.94■□□□□ 0.62
HERC4-214ENST00000513996 DCAF8L2P0C7V8 631 aa18.1■□□□□ 0.49
HERC4-214ENST00000513996 RB1CC1Q8TDY2 1594 aa18.05■□□□□ 0.48
HERC4-214ENST00000513996 NACADO15069 1562 aa18.01■□□□□ 0.47
HERC4-214ENST00000513996 MYO15BQ96JP2 1530 aa17.84■□□□□ 0.45
HERC4-214ENST00000513996 ZCCHC6Q5VYS8 1495 aaKnown RBP17.83■□□□□ 0.45
HERC4-214ENST00000513996 PABPN1Q86U42 306 aaKnown RBP eCLIP17.75■□□□□ 0.43
HERC4-214ENST00000513996 DCAF1Q9Y4B6 1507 aa17.72■□□□□ 0.43
HERC4-214ENST00000513996 DNAJC5BQ9UF47 199 aa17.67■□□□□ 0.42
HERC4-214ENST00000513996 UNC13AQ9UPW8 1703 aa17.64■□□□□ 0.41
HERC4-214ENST00000513996 BICRAQ9NZM4 1560 aa17.59■□□□□ 0.41
HERC4-214ENST00000513996 SENP3Q9H4L4 574 aaPredicted RBP17.45■□□□□ 0.38
HERC4-214ENST00000513996 SCRIBQ14160 1630 aa17.44■□□□□ 0.38
HERC4-214ENST00000513996 SHROOM4Q9ULL8 1493 aa17.27■□□□□ 0.36
HERC4-214ENST00000513996 PHF23Q9BUL5 403 aaPredicted RBP17.27■□□□□ 0.36
HERC4-214ENST00000513996 EIF4G1Q04637 1599 aaKnown RBP17.1■□□□□ 0.33
HERC4-214ENST00000513996 CC2D2AQ9P2K1 1620 aa17.08■□□□□ 0.32
HERC4-214ENST00000513996 CECR2Q9BXF3 1484 aa17.01■□□□□ 0.31
HERC4-214ENST00000513996 NCAPD3P42695 1498 aa16.68■□□□□ 0.26
HERC4-214ENST00000513996 ATAD2BQ9ULI0 1458 aa16.67■□□□□ 0.26
HERC4-214ENST00000513996 SMARCA4P51532 1647 aa16.67■□□□□ 0.26
HERC4-214ENST00000513996 BAZ1AQ9NRL2 1556 aaPredicted RBP16.6■□□□□ 0.25
HERC4-214ENST00000513996 MROH2BQ7Z745 1585 aa16.58■□□□□ 0.24
HERC4-214ENST00000513996 SMARCA2P51531 1590 aa16.56■□□□□ 0.24
HERC4-214ENST00000513996 HMGXB3Q12766 1538 aa16.51■□□□□ 0.23
HERC4-214ENST00000513996 PEG3Q9GZU2 1588 aa16.49■□□□□ 0.23
HERC4-214ENST00000513996 BAZ1BQ9UIG0 1483 aaKnown RBP16.48■□□□□ 0.23
HERC4-214ENST00000513996 NESP48681 1621 aa16.36■□□□□ 0.21
HERC4-214ENST00000513996 WIZO95785 1651 aa16.36■□□□□ 0.21
HERC4-214ENST00000513996 RSF1Q96T23 1441 aaPredicted RBP16.35■□□□□ 0.21
HERC4-214ENST00000513996 ERCC6Q03468 1493 aa16.28■□□□□ 0.2
HERC4-214ENST00000513996 CADPSQ9ULU8 1353 aa16.2■□□□□ 0.18
HERC4-214ENST00000513996 LAMC3Q9Y6N6 1575 aa16.19■□□□□ 0.18
HERC4-214ENST00000513996 CUX2O14529 1486 aa16.16■□□□□ 0.18
HERC4-214ENST00000513996 FOXD1Q16676 465 aa16.15■□□□□ 0.18
HERC4-214ENST00000513996 TOP2AP11388 1531 aaKnown RBP16.14■□□□□ 0.18
HERC4-214ENST00000513996 PDS5BQ9NTI5 1447 aa16.13■□□□□ 0.17
HERC4-214ENST00000513996 KIF21AQ7Z4S6 1674 aa16.06■□□□□ 0.16
HERC4-214ENST00000513996 THOC2Q8NI27 1593 aaKnown RBP16.06■□□□□ 0.16
HERC4-214ENST00000513996 CFTRP13569 1480 aa16.05■□□□□ 0.16
HERC4-214ENST00000513996 CCDC88BA6NC98 1476 aa16.03■□□□□ 0.16
HERC4-214ENST00000513996 FANCD2Q9BXW9 1451 aa15.98■□□□□ 0.15
HERC4-214ENST00000513996 DNAJC5Q9H3Z4 198 aa15.97■□□□□ 0.15
HERC4-214ENST00000513996 MRC2Q9UBG0 1479 aa15.97■□□□□ 0.15
HERC4-214ENST00000513996 CEP164Q9UPV0 1460 aa15.95■□□□□ 0.14
HERC4-214ENST00000513996 WDR62O43379 1518 aa15.9■□□□□ 0.14
HERC4-214ENST00000513996 PLPPR3Q6T4P5 718 aa15.9■□□□□ 0.14
HERC4-214ENST00000513996 URB2Q14146 1524 aaKnown RBP15.86■□□□□ 0.13
HERC4-214ENST00000513996 SUPT5HO00267 1087 aaKnown RBP15.85■□□□□ 0.13
HERC4-214ENST00000513996 PRDM2Q13029 1718 aa15.77■□□□□ 0.12
HERC4-214ENST00000513996 TOPBP1Q92547 1522 aa15.72■□□□□ 0.11
HERC4-214ENST00000513996 ABCC8Q09428 1581 aa15.66■□□□□ 0.1
HERC4-214ENST00000513996 ZNF608Q9ULD9 1512 aaPredicted RBP15.63■□□□□ 0.09
HERC4-214ENST00000513996 DNMBPQ6XZF7 1577 aa15.63■□□□□ 0.09
HERC4-214ENST00000513996 IFT140Q96RY7 1462 aa15.63■□□□□ 0.09
HERC4-214ENST00000513996 POLA1P09884 1462 aaPredicted RBP15.57■□□□□ 0.08
HERC4-214ENST00000513996 CUX1P39880 1505 aa15.55■□□□□ 0.08
HERC4-214ENST00000513996 RAD54L2Q9Y4B4 1467 aa15.55■□□□□ 0.08
HERC4-214ENST00000513996 AQRO60306 1485 aaKnown RBP eCLIP15.54■□□□□ 0.081e-10■□□□□ 10.5
HERC4-214ENST00000513996 OSCARQ8IYS5 282 aa15.54■□□□□ 0.08
HERC4-214ENST00000513996 TARBP1Q13395 1621 aaKnown RBP15.54■□□□□ 0.08
HERC4-214ENST00000513996 SOGA1O94964 1423 aa15.53■□□□□ 0.08
HERC4-214ENST00000513996 FGD5Q6ZNL6 1462 aa15.51■□□□□ 0.07
HERC4-214ENST00000513996 TDRD9Q8NDG6 1382 aaKnown RBP15.49■□□□□ 0.07
HERC4-214ENST00000513996 EIF4G3O43432 1585 aaKnown RBP15.47■□□□□ 0.07
HERC4-214ENST00000513996 FBLN2P98095 1184 aa15.39■□□□□ 0.05
HERC4-214ENST00000513996 WRNQ14191 1432 aaPredicted RBP eCLIP15.37■□□□□ 0.05
HERC4-214ENST00000513996 TRIM41Q8WV44 630 aa15.36■□□□□ 0.05
HERC4-214ENST00000513996 SNAPC4Q5SXM2 1469 aa15.34■□□□□ 0.05
HERC4-214ENST00000513996 ABCA10Q8WWZ4 1543 aa15.34■□□□□ 0.05
HERC4-214ENST00000513996 SYNJ1O43426 1573 aa15.33■□□□□ 0.05
HERC4-214ENST00000513996 GRIN2BQ13224 1484 aa15.33■□□□□ 0.04
HERC4-214ENST00000513996 GAPVD1Q14C86 1478 aa15.33■□□□□ 0.04
HERC4-214ENST00000513996 WDR97A6NE52 1622 aa15.32■□□□□ 0.04
HERC4-214ENST00000513996 TOP2BQ02880 1626 aa15.32■□□□□ 0.04
HERC4-214ENST00000513996 CHD1O14646 1710 aa15.3■□□□□ 0.04
HERC4-214ENST00000513996 CHMP7Q8WUX9 453 aaPredicted RBP15.3■□□□□ 0.04
HERC4-214ENST00000513996 BIVM-ERCC5R4GMW8 1640 aa15.3■□□□□ 0.04
HERC4-214ENST00000513996 MAGI1Q96QZ7 1491 aaPredicted RBP15.28■□□□□ 0.04
HERC4-214ENST00000513996 ABCA5Q8WWZ7 1642 aa15.26■□□□□ 0.03
HERC4-214ENST00000513996 PPP6R1Q9UPN7 881 aa15.26■□□□□ 0.03
HERC4-214ENST00000513996 SYNJ2O15056 1496 aa15.24■□□□□ 0.03
HERC4-214ENST00000513996 RIMBP3CA6NJZ7 1639 aa15.24■□□□□ 0.03
HERC4-214ENST00000513996 RIMBP3BA6NNM3 1639 aa15.24■□□□□ 0.03
HERC4-214ENST00000513996 RIMBP3Q9UFD9 1639 aa15.24■□□□□ 0.03
HERC4-214ENST00000513996 ARHGEF11O15085 1522 aa15.23■□□□□ 0.03
HERC4-214ENST00000513996 ADRA2BP18089 450 aa15.22■□□□□ 0.03
HERC4-214ENST00000513996 PBRM1Q86U86 1689 aa15.21■□□□□ 0.03
HERC4-214ENST00000513996 CYB5RLQ6IPT4 315 aa15.19■□□□□ 0.02
HERC4-214ENST00000513996 CLASP1Q7Z460 1538 aa15.17■□□□□ 0.02
HERC4-214ENST00000513996 PIAS4Q8N2W9 510 aaPredicted RBP15.15■□□□□ 0.02
HERC4-214ENST00000513996 FHAD1B1AJZ9 1412 aa15.13■□□□□ 0.01
HERC4-214ENST00000513996 GRIN2AQ12879 1464 aa15.13■□□□□ 0.01
HERC4-214ENST00000513996 ARAP1Q96P48 1450 aa15.13■□□□□ 0.01
HERC4-214ENST00000513996 ERICH3Q5RHP9 1530 aa15.12■□□□□ 0.01
HERC4-214ENST00000513996 ADAMTS12P58397 1594 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms