RNA–Protein interactions for RNA: ENST00000513639.5

HTT-212, Transcript of huntingtin, humanhuman

TSL 2

Gene HTT, Length 259 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-212ENST00000513639 NISCHQ9Y2I1 1504 aa17.82■□□□□ 0.44
HTT-212ENST00000513639 CCDC180Q9P1Z9 1646 aa15.84■□□□□ 0.13
HTT-212ENST00000513639 ABCC9O60706 1549 aa15.82■□□□□ 0.12
HTT-212ENST00000513639 AEBP2Q6ZN18 517 aaPredicted RBP15.23■□□□□ 0.03
HTT-212ENST00000513639 CHIC1Q5VXU3 224 aa15.22■□□□□ 0.03
HTT-212ENST00000513639 DCAF8L2P0C7V8 631 aa15.18■□□□□ 0.02
HTT-212ENST00000513639 RB1CC1Q8TDY2 1594 aa15.11■□□□□ 0.01
HTT-212ENST00000513639 NACADO15069 1562 aa15.06■□□□□ 0
HTT-212ENST00000513639 MYO15BQ96JP2 1530 aa14.9□□□□□ -0.02
HTT-212ENST00000513639 PABPN1Q86U42 306 aaKnown RBP eCLIP14.84□□□□□ -0.03
HTT-212ENST00000513639 DNAJC5BQ9UF47 199 aa14.81□□□□□ -0.04
HTT-212ENST00000513639 DCAF1Q9Y4B6 1507 aa14.74□□□□□ -0.05
HTT-212ENST00000513639 ZCCHC6Q5VYS8 1495 aaKnown RBP14.74□□□□□ -0.05
HTT-212ENST00000513639 BICRAQ9NZM4 1560 aa14.59□□□□□ -0.07
HTT-212ENST00000513639 UNC13AQ9UPW8 1703 aa14.58□□□□□ -0.07
HTT-212ENST00000513639 SHROOM4Q9ULL8 1493 aa14.5□□□□□ -0.09
HTT-212ENST00000513639 SCRIBQ14160 1630 aa14.44□□□□□ -0.1
HTT-212ENST00000513639 CECR2Q9BXF3 1484 aa14.27□□□□□ -0.12
HTT-212ENST00000513639 EIF4G1Q04637 1599 aaKnown RBP14.26□□□□□ -0.13
HTT-212ENST00000513639 CC2D2AQ9P2K1 1620 aa14.25□□□□□ -0.13
HTT-212ENST00000513639 NCAPD3P42695 1498 aa13.94□□□□□ -0.18
HTT-212ENST00000513639 ATAD2BQ9ULI0 1458 aa13.87□□□□□ -0.19
HTT-212ENST00000513639 SMARCA2P51531 1590 aa13.84□□□□□ -0.19
HTT-212ENST00000513639 BAZ1AQ9NRL2 1556 aaPredicted RBP13.82□□□□□ -0.2
HTT-212ENST00000513639 SMARCA4P51532 1647 aa13.81□□□□□ -0.2
HTT-212ENST00000513639 HMGXB3Q12766 1538 aa13.76□□□□□ -0.21
HTT-212ENST00000513639 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
HTT-212ENST00000513639 ERCC6Q03468 1493 aa13.7□□□□□ -0.22
HTT-212ENST00000513639 PEG3Q9GZU2 1588 aa13.7□□□□□ -0.22
HTT-212ENST00000513639 MROH2BQ7Z745 1585 aa13.69□□□□□ -0.22
HTT-212ENST00000513639 CUX2O14529 1486 aa13.62□□□□□ -0.23
HTT-212ENST00000513639 DNAJC5Q9H3Z4 198 aa13.6□□□□□ -0.23
HTT-212ENST00000513639 NESP48681 1621 aa13.59□□□□□ -0.23
HTT-212ENST00000513639 PDS5BQ9NTI5 1447 aa13.57□□□□□ -0.24
HTT-212ENST00000513639 CADPSQ9ULU8 1353 aa13.56□□□□□ -0.24
HTT-212ENST00000513639 LAMC3Q9Y6N6 1575 aa13.54□□□□□ -0.24
HTT-212ENST00000513639 RSF1Q96T23 1441 aaPredicted RBP13.52□□□□□ -0.25
HTT-212ENST00000513639 WIZO95785 1651 aa13.49□□□□□ -0.25
HTT-212ENST00000513639 CFTRP13569 1480 aa13.37□□□□□ -0.27
HTT-212ENST00000513639 TOP2AP11388 1531 aaKnown RBP13.37□□□□□ -0.27
HTT-212ENST00000513639 PHF23Q9BUL5 403 aaPredicted RBP13.36□□□□□ -0.27
HTT-212ENST00000513639 MRC2Q9UBG0 1479 aa13.36□□□□□ -0.27
HTT-212ENST00000513639 THOC2Q8NI27 1593 aaKnown RBP13.35□□□□□ -0.27
HTT-212ENST00000513639 FANCD2Q9BXW9 1451 aa13.33□□□□□ -0.28
HTT-212ENST00000513639 CEP164Q9UPV0 1460 aa13.33□□□□□ -0.28
HTT-212ENST00000513639 KIF21AQ7Z4S6 1674 aa13.33□□□□□ -0.28
HTT-212ENST00000513639 CCDC88BA6NC98 1476 aa13.28□□□□□ -0.28
HTT-212ENST00000513639 WDR62O43379 1518 aa13.27□□□□□ -0.29
HTT-212ENST00000513639 OSCARQ8IYS5 282 aa13.17□□□□□ -0.3
HTT-212ENST00000513639 URB2Q14146 1524 aaKnown RBP13.17□□□□□ -0.3
HTT-212ENST00000513639 ABCC8Q09428 1581 aa13.15□□□□□ -0.3
HTT-212ENST00000513639 SUPT5HO00267 1087 aaKnown RBP13.1□□□□□ -0.31
HTT-212ENST00000513639 IFT140Q96RY7 1462 aa13.09□□□□□ -0.31
HTT-212ENST00000513639 TOPBP1Q92547 1522 aa13.07□□□□□ -0.32
HTT-212ENST00000513639 PRDM2Q13029 1718 aa13.05□□□□□ -0.32
HTT-212ENST00000513639 TRIM41Q8WV44 630 aa13.02□□□□□ -0.33
HTT-212ENST00000513639 DNMBPQ6XZF7 1577 aa13□□□□□ -0.33
HTT-212ENST00000513639 ZNF608Q9ULD9 1512 aaPredicted RBP12.99□□□□□ -0.33
HTT-212ENST00000513639 SENP3Q9H4L4 574 aaPredicted RBP12.98□□□□□ -0.33
HTT-212ENST00000513639 SOGA1O94964 1423 aa12.97□□□□□ -0.33
HTT-212ENST00000513639 FBLN2P98095 1184 aa12.95□□□□□ -0.34
HTT-212ENST00000513639 AQRO60306 1485 aaKnown RBP eCLIP12.95□□□□□ -0.34
HTT-212ENST00000513639 POLA1P09884 1462 aaPredicted RBP12.94□□□□□ -0.34
HTT-212ENST00000513639 TDRD9Q8NDG6 1382 aaKnown RBP12.92□□□□□ -0.34
HTT-212ENST00000513639 RAD54L2Q9Y4B4 1467 aa12.9□□□□□ -0.34
HTT-212ENST00000513639 TARBP1Q13395 1621 aaKnown RBP12.89□□□□□ -0.35
HTT-212ENST00000513639 CHMP7Q8WUX9 453 aaPredicted RBP12.89□□□□□ -0.35
HTT-212ENST00000513639 FGD5Q6ZNL6 1462 aa12.87□□□□□ -0.35
HTT-212ENST00000513639 EIF4G3O43432 1585 aaKnown RBP12.86□□□□□ -0.35
HTT-212ENST00000513639 CUX1P39880 1505 aa12.85□□□□□ -0.35
HTT-212ENST00000513639 CYB5RLQ6IPT4 315 aa12.82□□□□□ -0.36
HTT-212ENST00000513639 WDR97A6NE52 1622 aa12.81□□□□□ -0.36
HTT-212ENST00000513639 GRIN2BQ13224 1484 aa12.81□□□□□ -0.36
HTT-212ENST00000513639 WRNQ14191 1432 aaPredicted RBP eCLIP12.8□□□□□ -0.36
HTT-212ENST00000513639 GAPVD1Q14C86 1478 aa12.78□□□□□ -0.36
HTT-212ENST00000513639 MAGI1Q96QZ7 1491 aaPredicted RBP12.78□□□□□ -0.36
HTT-212ENST00000513639 SNAPC4Q5SXM2 1469 aa12.77□□□□□ -0.37
HTT-212ENST00000513639 ARHGEF11O15085 1522 aa12.76□□□□□ -0.37
HTT-212ENST00000513639 ABCA10Q8WWZ4 1543 aa12.75□□□□□ -0.37
HTT-212ENST00000513639 RIMBP3CA6NJZ7 1639 aa12.74□□□□□ -0.37
HTT-212ENST00000513639 RIMBP3BA6NNM3 1639 aa12.74□□□□□ -0.37
HTT-212ENST00000513639 RIMBP3Q9UFD9 1639 aa12.74□□□□□ -0.37
HTT-212ENST00000513639 SYNJ2O15056 1496 aa12.74□□□□□ -0.37
HTT-212ENST00000513639 CHD1O14646 1710 aa12.71□□□□□ -0.38
HTT-212ENST00000513639 SYNJ1O43426 1573 aa12.69□□□□□ -0.38
HTT-212ENST00000513639 TOP2BQ02880 1626 aa12.68□□□□□ -0.38
HTT-212ENST00000513639 TRHP20396 242 aaPredicted RBP12.65□□□□□ -0.38
HTT-212ENST00000513639 FHAD1B1AJZ9 1412 aa12.64□□□□□ -0.39
HTT-212ENST00000513639 BIVM-ERCC5R4GMW8 1640 aa12.63□□□□□ -0.39
HTT-212ENST00000513639 ARAP1Q96P48 1450 aa12.63□□□□□ -0.39
HTT-212ENST00000513639 CLASP1Q7Z460 1538 aa12.62□□□□□ -0.39
HTT-212ENST00000513639 ABCA5Q8WWZ7 1642 aa12.62□□□□□ -0.39
HTT-212ENST00000513639 GRIN2AQ12879 1464 aa12.6□□□□□ -0.39
HTT-212ENST00000513639 ERICH3Q5RHP9 1530 aa12.6□□□□□ -0.39
HTT-212ENST00000513639 PBRM1Q86U86 1689 aa12.59□□□□□ -0.39
HTT-212ENST00000513639 JPH4Q96JJ6 628 aa12.58□□□□□ -0.4
HTT-212ENST00000513639 NUP160Q12769 1436 aa12.57□□□□□ -0.4
HTT-212ENST00000513639 IGF1RP08069 1367 aa12.56□□□□□ -0.4
HTT-212ENST00000513639 KIF27Q86VH2 1401 aa12.55□□□□□ -0.4
HTT-212ENST00000513639 PLPPR3Q6T4P5 718 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms