RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 NISCHQ9Y2I1 1504 aa18.9■□□□□ 0.62
RNF4-220ENST00000513578 CCDC180Q9P1Z9 1646 aa16.54■□□□□ 0.24
RNF4-220ENST00000513578 AEBP2Q6ZN18 517 aaPredicted RBP16.32■□□□□ 0.2
RNF4-220ENST00000513578 ZCCHC6Q5VYS8 1495 aaKnown RBP15.9■□□□□ 0.14
RNF4-220ENST00000513578 DCAF1Q9Y4B6 1507 aa15.73■□□□□ 0.11
RNF4-220ENST00000513578 MYO15BQ96JP2 1530 aa15.53■□□□□ 0.08
RNF4-220ENST00000513578 NACADO15069 1562 aa15.33■□□□□ 0.05
RNF4-220ENST00000513578 DCAF8L2P0C7V8 631 aa15.33■□□□□ 0.04
RNF4-220ENST00000513578 ABCC9O60706 1549 aa15.33■□□□□ 0.04
RNF4-220ENST00000513578 CHIC1Q5VXU3 224 aa15.32■□□□□ 0.04
RNF4-220ENST00000513578 SHROOM4Q9ULL8 1493 aa15.25■□□□□ 0.03
RNF4-220ENST00000513578 RB1CC1Q8TDY2 1594 aa15.15■□□□□ 0.02
RNF4-220ENST00000513578 SCRIBQ14160 1630 aa15.04■□□□□ -0
RNF4-220ENST00000513578 DNAJC5BQ9UF47 199 aa15.04■□□□□ -0
RNF4-220ENST00000513578 UNC13AQ9UPW8 1703 aa14.89□□□□□ -0.03
RNF4-220ENST00000513578 SUPT5HO00267 1087 aaKnown RBP14.74□□□□□ -0.05
RNF4-220ENST00000513578 DNAJC5Q9H3Z4 198 aa14.73□□□□□ -0.05
RNF4-220ENST00000513578 BICRAQ9NZM4 1560 aa14.68□□□□□ -0.06
RNF4-220ENST00000513578 RSF1Q96T23 1441 aaPredicted RBP14.66□□□□□ -0.06
RNF4-220ENST00000513578 BAZ1AQ9NRL2 1556 aaPredicted RBP14.6□□□□□ -0.07
RNF4-220ENST00000513578 CECR2Q9BXF3 1484 aa14.59□□□□□ -0.07
RNF4-220ENST00000513578 MROH2BQ7Z745 1585 aa14.56□□□□□ -0.08
RNF4-220ENST00000513578 SMARCA4P51532 1647 aa14.51□□□□□ -0.09
RNF4-220ENST00000513578 WIZO95785 1651 aa14.46□□□□□ -0.1
RNF4-220ENST00000513578 PABPN1Q86U42 306 aaKnown RBP eCLIP14.41□□□□□ -0.1
RNF4-220ENST00000513578 PEG3Q9GZU2 1588 aa14.4□□□□□ -0.1
RNF4-220ENST00000513578 TOP2AP11388 1531 aaKnown RBP14.35□□□□□ -0.11
RNF4-220ENST00000513578 SMARCA2P51531 1590 aa14.26□□□□□ -0.13
RNF4-220ENST00000513578 ATAD2BQ9ULI0 1458 aa14.22□□□□□ -0.13
RNF4-220ENST00000513578 EIF4G1Q04637 1599 aaKnown RBP14.21□□□□□ -0.14
RNF4-220ENST00000513578 CCDC88BA6NC98 1476 aa14.15□□□□□ -0.14
RNF4-220ENST00000513578 HMGXB3Q12766 1538 aa14.13□□□□□ -0.15
RNF4-220ENST00000513578 NCAPD3P42695 1498 aa14.12□□□□□ -0.15
RNF4-220ENST00000513578 BAZ1BQ9UIG0 1483 aaKnown RBP14.12□□□□□ -0.15
RNF4-220ENST00000513578 CC2D2AQ9P2K1 1620 aa13.96□□□□□ -0.17
RNF4-220ENST00000513578 TRIM41Q8WV44 630 aa13.92□□□□□ -0.18
RNF4-220ENST00000513578 PRDM2Q13029 1718 aa13.87□□□□□ -0.19
RNF4-220ENST00000513578 ABCC8Q09428 1581 aa13.83□□□□□ -0.19
RNF4-220ENST00000513578 CFTRP13569 1480 aa13.81□□□□□ -0.2
RNF4-220ENST00000513578 SENP3Q9H4L4 574 aaPredicted RBP13.81□□□□□ -0.2
RNF4-220ENST00000513578 WRNQ14191 1432 aaPredicted RBP eCLIP13.78□□□□□ -0.2
RNF4-220ENST00000513578 BIVM-ERCC5R4GMW8 1640 aa13.74□□□□□ -0.21
RNF4-220ENST00000513578 SYNJ1O43426 1573 aa13.73□□□□□ -0.21
RNF4-220ENST00000513578 CADPSQ9ULU8 1353 aa13.72□□□□□ -0.21
RNF4-220ENST00000513578 TOP2BQ02880 1626 aa13.72□□□□□ -0.21
RNF4-220ENST00000513578 EEA1Q15075 1411 aa13.72□□□□□ -0.21
RNF4-220ENST00000513578 PHF23Q9BUL5 403 aaPredicted RBP13.7□□□□□ -0.22
RNF4-220ENST00000513578 LAMC3Q9Y6N6 1575 aa13.64□□□□□ -0.23
RNF4-220ENST00000513578 LOC105371045A0A1W2PR82 267 aa13.63□□□□□ -0.23
RNF4-220ENST00000513578 CUX1P39880 1505 aa13.61□□□□□ -0.23
RNF4-220ENST00000513578 SOGA1O94964 1423 aa13.59□□□□□ -0.23
RNF4-220ENST00000513578 FAM9AQ8IZU1 332 aaPredicted RBP13.57□□□□□ -0.24
RNF4-220ENST00000513578 FANCD2Q9BXW9 1451 aa13.55□□□□□ -0.24
RNF4-220ENST00000513578 RUSC2Q8N2Y8 1516 aa13.54□□□□□ -0.24
RNF4-220ENST00000513578 KIF21BO75037 1637 aa13.53□□□□□ -0.24
RNF4-220ENST00000513578 CSRNP3Q8WYN3 585 aa13.53□□□□□ -0.24
RNF4-220ENST00000513578 DNMBPQ6XZF7 1577 aa13.5□□□□□ -0.25
RNF4-220ENST00000513578 NESP48681 1621 aa13.5□□□□□ -0.25
RNF4-220ENST00000513578 GOLGA3Q08378 1498 aa13.48□□□□□ -0.25
RNF4-220ENST00000513578 PDS5BQ9NTI5 1447 aa13.47□□□□□ -0.25
RNF4-220ENST00000513578 CEP164Q9UPV0 1460 aa13.47□□□□□ -0.25
RNF4-220ENST00000513578 TNIKQ9UKE5 1360 aa13.45□□□□□ -0.26
RNF4-220ENST00000513578 KIF27Q86VH2 1401 aa13.44□□□□□ -0.26
RNF4-220ENST00000513578 TOPBP1Q92547 1522 aa13.44□□□□□ -0.26
RNF4-220ENST00000513578 FGD5Q6ZNL6 1462 aa13.43□□□□□ -0.26
RNF4-220ENST00000513578 KIF21AQ7Z4S6 1674 aa13.43□□□□□ -0.26
RNF4-220ENST00000513578 ERICH3Q5RHP9 1530 aa13.43□□□□□ -0.26
RNF4-220ENST00000513578 PRXQ9BXM0 1461 aa13.4□□□□□ -0.26
RNF4-220ENST00000513578 URB2Q14146 1524 aaKnown RBP13.38□□□□□ -0.27
RNF4-220ENST00000513578 WDR97A6NE52 1622 aa13.37□□□□□ -0.27
RNF4-220ENST00000513578 ABCA10Q8WWZ4 1543 aa13.37□□□□□ -0.27
RNF4-220ENST00000513578 POLA1P09884 1462 aaPredicted RBP13.36□□□□□ -0.27
RNF4-220ENST00000513578 CUX2O14529 1486 aa13.34□□□□□ -0.27
RNF4-220ENST00000513578 CEP162Q5TB80 1403 aa13.33□□□□□ -0.28
RNF4-220ENST00000513578 RAPGEF2Q9Y4G8 1499 aa13.33□□□□□ -0.28
RNF4-220ENST00000513578 MRC2Q9UBG0 1479 aa13.3□□□□□ -0.28
RNF4-220ENST00000513578 IGF1RP08069 1367 aa13.3□□□□□ -0.28
RNF4-220ENST00000513578 UBTFP17480 764 aaKnown RBP13.29□□□□□ -0.28
RNF4-220ENST00000513578 CUL7Q14999 1698 aa13.28□□□□□ -0.28
RNF4-220ENST00000513578 RAD54L2Q9Y4B4 1467 aa13.27□□□□□ -0.29
RNF4-220ENST00000513578 TARBP1Q13395 1621 aaKnown RBP13.27□□□□□ -0.29
RNF4-220ENST00000513578 ABCA5Q8WWZ7 1642 aa13.27□□□□□ -0.29
RNF4-220ENST00000513578 WDR62O43379 1518 aa13.26□□□□□ -0.29
RNF4-220ENST00000513578 EHMT2Q96KQ7 1210 aa13.26□□□□□ -0.29
RNF4-220ENST00000513578 CLIP1P30622 1438 aa13.22□□□□□ -0.29
RNF4-220ENST00000513578 CARMIL1Q5VZK9 1371 aa13.21□□□□□ -0.29
RNF4-220ENST00000513578 THOC2Q8NI27 1593 aaKnown RBP13.2□□□□□ -0.3
RNF4-220ENST00000513578 TRIM26Q12899 539 aaPredicted RBP13.18□□□□□ -0.3
RNF4-220ENST00000513578 GAPVD1Q14C86 1478 aa13.17□□□□□ -0.3
RNF4-220ENST00000513578 IFT140Q96RY7 1462 aa13.16□□□□□ -0.3
RNF4-220ENST00000513578 PBRM1Q86U86 1689 aa13.16□□□□□ -0.3
RNF4-220ENST00000513578 CTTNBP2Q8WZ74 1663 aa13.15□□□□□ -0.31
RNF4-220ENST00000513578 VPS8Q8N3P4 1428 aa13.14□□□□□ -0.31
RNF4-220ENST00000513578 ERCC6Q03468 1493 aa13.13□□□□□ -0.31
RNF4-220ENST00000513578 TDRD9Q8NDG6 1382 aaKnown RBP13.11□□□□□ -0.31
RNF4-220ENST00000513578 PCGF6Q9BYE7 350 aa13.1□□□□□ -0.31
RNF4-220ENST00000513578 ARAP1Q96P48 1450 aa13.1□□□□□ -0.31
RNF4-220ENST00000513578 GRIN2BQ13224 1484 aa13.08□□□□□ -0.32
RNF4-220ENST00000513578 ARHGAP35Q9NRY4 1499 aa13.08□□□□□ -0.32
RNF4-220ENST00000513578 ADAMTS12P58397 1594 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms