RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 NISCHQ9Y2I1 1504 aa24.65■■□□□ 1.54
TCOF1-212ENST00000513538 ABCC9O60706 1549 aa22.33■■□□□ 1.17
TCOF1-212ENST00000513538 CCDC180Q9P1Z9 1646 aa22.2■■□□□ 1.15
TCOF1-212ENST00000513538 RB1CC1Q8TDY2 1594 aa21.17■□□□□ 0.98
TCOF1-212ENST00000513538 DNAJC5BQ9UF47 199 aa21.11■□□□□ 0.97
TCOF1-212ENST00000513538 NACADO15069 1562 aa20.98■□□□□ 0.95
TCOF1-212ENST00000513538 UNC13AQ9UPW8 1703 aa20.81■□□□□ 0.92
TCOF1-212ENST00000513538 DCAF8L2P0C7V8 631 aa20.76■□□□□ 0.91
TCOF1-212ENST00000513538 PABPN1Q86U42 306 aaKnown RBP eCLIP20.74■□□□□ 0.91
TCOF1-212ENST00000513538 BICRAQ9NZM4 1560 aa20.64■□□□□ 0.9
TCOF1-212ENST00000513538 MYO15BQ96JP2 1530 aa20.64■□□□□ 0.9
TCOF1-212ENST00000513538 ZCCHC6Q5VYS8 1495 aaKnown RBP20.42■□□□□ 0.86
TCOF1-212ENST00000513538 DCAF1Q9Y4B6 1507 aa20.33■□□□□ 0.85
TCOF1-212ENST00000513538 SHROOM4Q9ULL8 1493 aa20.24■□□□□ 0.83
TCOF1-212ENST00000513538 SCRIBQ14160 1630 aa20.24■□□□□ 0.83
TCOF1-212ENST00000513538 CC2D2AQ9P2K1 1620 aa20.2■□□□□ 0.82
TCOF1-212ENST00000513538 CECR2Q9BXF3 1484 aa20.11■□□□□ 0.81
TCOF1-212ENST00000513538 EIF4G1Q04637 1599 aaKnown RBP20.1■□□□□ 0.81
TCOF1-212ENST00000513538 DNAJC5Q9H3Z4 198 aa19.41■□□□□ 0.7
TCOF1-212ENST00000513538 NCAPD3P42695 1498 aa19.37■□□□□ 0.69
TCOF1-212ENST00000513538 ATAD2BQ9ULI0 1458 aa19.32■□□□□ 0.68
TCOF1-212ENST00000513538 SMARCA4P51532 1647 aa19.29■□□□□ 0.68
TCOF1-212ENST00000513538 CUX2O14529 1486 aa19.28■□□□□ 0.68
TCOF1-212ENST00000513538 HMGXB3Q12766 1538 aa19.24■□□□□ 0.67
TCOF1-212ENST00000513538 ERCC6Q03468 1493 aa19.23■□□□□ 0.67
TCOF1-212ENST00000513538 SMARCA2P51531 1590 aa19.23■□□□□ 0.67
TCOF1-212ENST00000513538 NESP48681 1621 aa19.18■□□□□ 0.66
TCOF1-212ENST00000513538 BAZ1AQ9NRL2 1556 aaPredicted RBP19.12■□□□□ 0.65
TCOF1-212ENST00000513538 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
TCOF1-212ENST00000513538 PEG3Q9GZU2 1588 aa19.09■□□□□ 0.65
TCOF1-212ENST00000513538 THOC2Q8NI27 1593 aaKnown RBP19.04■□□□□ 0.64
TCOF1-212ENST00000513538 MROH2BQ7Z745 1585 aa19.02■□□□□ 0.64
TCOF1-212ENST00000513538 LAMC3Q9Y6N6 1575 aa18.97■□□□□ 0.63
TCOF1-212ENST00000513538 KIF21AQ7Z4S6 1674 aa18.95■□□□□ 0.62
TCOF1-212ENST00000513538 PDS5BQ9NTI5 1447 aa18.81■□□□□ 0.6
TCOF1-212ENST00000513538 WIZO95785 1651 aa18.8■□□□□ 0.6
TCOF1-212ENST00000513538 CADPSQ9ULU8 1353 aa18.76■□□□□ 0.59
TCOF1-212ENST00000513538 MRC2Q9UBG0 1479 aa18.71■□□□□ 0.59
TCOF1-212ENST00000513538 WDR62O43379 1518 aa18.7■□□□□ 0.58
TCOF1-212ENST00000513538 CEP164Q9UPV0 1460 aa18.59■□□□□ 0.57
TCOF1-212ENST00000513538 FANCD2Q9BXW9 1451 aa18.58■□□□□ 0.56
TCOF1-212ENST00000513538 CFTRP13569 1480 aa18.55■□□□□ 0.56
TCOF1-212ENST00000513538 RSF1Q96T23 1441 aaPredicted RBP18.54■□□□□ 0.56
TCOF1-212ENST00000513538 TOP2AP11388 1531 aaKnown RBP18.52■□□□□ 0.56
TCOF1-212ENST00000513538 TRIM41Q8WV44 630 aa18.5■□□□□ 0.55
TCOF1-212ENST00000513538 URB2Q14146 1524 aaKnown RBP18.48■□□□□ 0.55
TCOF1-212ENST00000513538 PRDM2Q13029 1718 aa18.41■□□□□ 0.54
TCOF1-212ENST00000513538 OSCARQ8IYS5 282 aa18.31■□□□□ 0.52
TCOF1-212ENST00000513538 CCDC88BA6NC98 1476 aa18.3■□□□□ 0.52
TCOF1-212ENST00000513538 ZNF608Q9ULD9 1512 aaPredicted RBP18.27■□□□□ 0.51
TCOF1-212ENST00000513538 TOPBP1Q92547 1522 aa18.23■□□□□ 0.51
TCOF1-212ENST00000513538 IFT140Q96RY7 1462 aa18.21■□□□□ 0.51
TCOF1-212ENST00000513538 RIMBP3CA6NJZ7 1639 aa18.2■□□□□ 0.5
TCOF1-212ENST00000513538 RIMBP3BA6NNM3 1639 aa18.2■□□□□ 0.5
TCOF1-212ENST00000513538 RIMBP3Q9UFD9 1639 aa18.2■□□□□ 0.5
TCOF1-212ENST00000513538 EIF4G3O43432 1585 aaKnown RBP18.17■□□□□ 0.5
TCOF1-212ENST00000513538 AEBP2Q6ZN18 517 aaPredicted RBP18.16■□□□□ 0.5
TCOF1-212ENST00000513538 DNMBPQ6XZF7 1577 aa18.14■□□□□ 0.49
TCOF1-212ENST00000513538 ARHGEF11O15085 1522 aa18.12■□□□□ 0.49
TCOF1-212ENST00000513538 TARBP1Q13395 1621 aaKnown RBP18.11■□□□□ 0.49
TCOF1-212ENST00000513538 ABCC8Q09428 1581 aa18.09■□□□□ 0.49
TCOF1-212ENST00000513538 CHD1O14646 1710 aa18.08■□□□□ 0.48
TCOF1-212ENST00000513538 AQRO60306 1485 aaKnown RBP eCLIP18.05■□□□□ 0.484e-7■■■■■ 31.1
TCOF1-212ENST00000513538 POLA1P09884 1462 aaPredicted RBP18.03■□□□□ 0.48
TCOF1-212ENST00000513538 RAD54L2Q9Y4B4 1467 aa17.97■□□□□ 0.47
TCOF1-212ENST00000513538 ARAP1Q96P48 1450 aa17.95■□□□□ 0.46
TCOF1-212ENST00000513538 CYB5RLQ6IPT4 315 aa17.91■□□□□ 0.46
TCOF1-212ENST00000513538 FGD5Q6ZNL6 1462 aa17.9■□□□□ 0.46
TCOF1-212ENST00000513538 TDRD9Q8NDG6 1382 aaKnown RBP17.9■□□□□ 0.46
TCOF1-212ENST00000513538 SOGA1O94964 1423 aa17.89■□□□□ 0.45
TCOF1-212ENST00000513538 CUX1P39880 1505 aa17.88■□□□□ 0.45
TCOF1-212ENST00000513538 FBLN2P98095 1184 aa17.88■□□□□ 0.45
TCOF1-212ENST00000513538 CHIC1Q5VXU3 224 aa17.87■□□□□ 0.45
TCOF1-212ENST00000513538 SNAPC4Q5SXM2 1469 aa17.87■□□□□ 0.45
TCOF1-212ENST00000513538 WDR97A6NE52 1622 aa17.85■□□□□ 0.45
TCOF1-212ENST00000513538 CLASP1Q7Z460 1538 aa17.85■□□□□ 0.45
TCOF1-212ENST00000513538 MAGI1Q96QZ7 1491 aaPredicted RBP17.79■□□□□ 0.44
TCOF1-212ENST00000513538 GRIN2BQ13224 1484 aa17.77■□□□□ 0.44
TCOF1-212ENST00000513538 SYNJ1O43426 1573 aa17.77■□□□□ 0.44
TCOF1-212ENST00000513538 PBRM1Q86U86 1689 aa17.76■□□□□ 0.43
TCOF1-212ENST00000513538 TRHP20396 242 aaPredicted RBP17.73■□□□□ 0.43
TCOF1-212ENST00000513538 SYNJ2O15056 1496 aa17.73■□□□□ 0.43
TCOF1-212ENST00000513538 CHMP7Q8WUX9 453 aaPredicted RBP17.72■□□□□ 0.43
TCOF1-212ENST00000513538 ABCA5Q8WWZ7 1642 aa17.71■□□□□ 0.43
TCOF1-212ENST00000513538 GAPVD1Q14C86 1478 aa17.69■□□□□ 0.42
TCOF1-212ENST00000513538 ABCA10Q8WWZ4 1543 aa17.67■□□□□ 0.42
TCOF1-212ENST00000513538 ERCC6L2Q5T890 1561 aa17.59■□□□□ 0.41
TCOF1-212ENST00000513538 ADAMTS12P58397 1594 aa17.57■□□□□ 0.4
TCOF1-212ENST00000513538 GRIN2AQ12879 1464 aa17.56■□□□□ 0.4
TCOF1-212ENST00000513538 BIVM-ERCC5R4GMW8 1640 aa17.55■□□□□ 0.4
TCOF1-212ENST00000513538 CEP170Q5SW79 1584 aa17.55■□□□□ 0.4
TCOF1-212ENST00000513538 SUPT5HO00267 1087 aaKnown RBP17.54■□□□□ 0.4
TCOF1-212ENST00000513538 TOP2BQ02880 1626 aa17.53■□□□□ 0.4
TCOF1-212ENST00000513538 NUP160Q12769 1436 aa17.53■□□□□ 0.4
TCOF1-212ENST00000513538 WRNQ14191 1432 aaPredicted RBP eCLIP17.52■□□□□ 0.4
TCOF1-212ENST00000513538 SHROOM2Q13796 1616 aa17.5■□□□□ 0.39
TCOF1-212ENST00000513538 FHAD1B1AJZ9 1412 aa17.45■□□□□ 0.38
TCOF1-212ENST00000513538 ERICH3Q5RHP9 1530 aa17.43■□□□□ 0.38
TCOF1-212ENST00000513538 KIF13AQ9H1H9 1805 aa17.36■□□□□ 0.37
TCOF1-212ENST00000513538 RUSC2Q8N2Y8 1516 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms