RNA–Protein interactions for RNA: ENST00000512274.1

PDLIM5-217, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 372 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-217ENST00000512274 NISCHQ9Y2I1 1504 aa25.97■■□□□ 1.75
PDLIM5-217ENST00000512274 ABCC9O60706 1549 aa24.41■■□□□ 1.5
PDLIM5-217ENST00000512274 CCDC180Q9P1Z9 1646 aa23.59■■□□□ 1.37
PDLIM5-217ENST00000512274 DNAJC5BQ9UF47 199 aa23.55■■□□□ 1.36
PDLIM5-217ENST00000512274 RB1CC1Q8TDY2 1594 aa22.83■■□□□ 1.25
PDLIM5-217ENST00000512274 PABPN1Q86U42 306 aaKnown RBP eCLIP22.65■■□□□ 1.22
PDLIM5-217ENST00000512274 NACADO15069 1562 aa22.46■■□□□ 1.19
PDLIM5-217ENST00000512274 DCAF8L2P0C7V8 631 aa22.43■■□□□ 1.18
PDLIM5-217ENST00000512274 UNC13AQ9UPW8 1703 aa22.4■■□□□ 1.18
PDLIM5-217ENST00000512274 BICRAQ9NZM4 1560 aa22.21■■□□□ 1.15
PDLIM5-217ENST00000512274 DNAJC5Q9H3Z4 198 aa22.07■■□□□ 1.12
PDLIM5-217ENST00000512274 CECR2Q9BXF3 1484 aa22.01■■□□□ 1.11
PDLIM5-217ENST00000512274 CC2D2AQ9P2K1 1620 aa21.98■■□□□ 1.11
PDLIM5-217ENST00000512274 MYO15BQ96JP2 1530 aa21.82■■□□□ 1.08
PDLIM5-217ENST00000512274 EIF4G1Q04637 1599 aaKnown RBP21.71■■□□□ 1.07
PDLIM5-217ENST00000512274 SHROOM4Q9ULL8 1493 aa21.67■■□□□ 1.06
PDLIM5-217ENST00000512274 SCRIBQ14160 1630 aa21.56■■□□□ 1.04
PDLIM5-217ENST00000512274 ZCCHC6Q5VYS8 1495 aaKnown RBP21.34■■□□□ 1.01
PDLIM5-217ENST00000512274 DCAF1Q9Y4B6 1507 aa21.31■■□□□ 1
PDLIM5-217ENST00000512274 CUX2O14529 1486 aa21.21■□□□□ 0.99
PDLIM5-217ENST00000512274 ERCC6Q03468 1493 aa21.09■□□□□ 0.97
PDLIM5-217ENST00000512274 TRIM41Q8WV44 630 aa20.94■□□□□ 0.94
PDLIM5-217ENST00000512274 NESP48681 1621 aa20.77■□□□□ 0.92
PDLIM5-217ENST00000512274 NCAPD3P42695 1498 aa20.74■□□□□ 0.91
PDLIM5-217ENST00000512274 THOC2Q8NI27 1593 aaKnown RBP20.63■□□□□ 0.89
PDLIM5-217ENST00000512274 ATAD2BQ9ULI0 1458 aa20.62■□□□□ 0.89
PDLIM5-217ENST00000512274 SMARCA2P51531 1590 aa20.54■□□□□ 0.88
PDLIM5-217ENST00000512274 HMGXB3Q12766 1538 aa20.52■□□□□ 0.87
PDLIM5-217ENST00000512274 KIF21AQ7Z4S6 1674 aa20.48■□□□□ 0.87
PDLIM5-217ENST00000512274 SMARCA4P51532 1647 aa20.43■□□□□ 0.86
PDLIM5-217ENST00000512274 LAMC3Q9Y6N6 1575 aa20.41■□□□□ 0.86
PDLIM5-217ENST00000512274 BAZ1BQ9UIG0 1483 aaKnown RBP20.4■□□□□ 0.86
PDLIM5-217ENST00000512274 PDS5BQ9NTI5 1447 aa20.32■□□□□ 0.84
PDLIM5-217ENST00000512274 BAZ1AQ9NRL2 1556 aaPredicted RBP20.26■□□□□ 0.83
PDLIM5-217ENST00000512274 MRC2Q9UBG0 1479 aa20.2■□□□□ 0.82
PDLIM5-217ENST00000512274 OSCARQ8IYS5 282 aa20.19■□□□□ 0.82
PDLIM5-217ENST00000512274 PEG3Q9GZU2 1588 aa20.16■□□□□ 0.82
PDLIM5-217ENST00000512274 WDR62O43379 1518 aa20.15■□□□□ 0.82
PDLIM5-217ENST00000512274 CADPSQ9ULU8 1353 aa20.1■□□□□ 0.81
PDLIM5-217ENST00000512274 MROH2BQ7Z745 1585 aa20.05■□□□□ 0.8
PDLIM5-217ENST00000512274 RIMBP3CA6NJZ7 1639 aa20.04■□□□□ 0.8
PDLIM5-217ENST00000512274 RIMBP3BA6NNM3 1639 aa20.04■□□□□ 0.8
PDLIM5-217ENST00000512274 RIMBP3Q9UFD9 1639 aa20.04■□□□□ 0.8
PDLIM5-217ENST00000512274 CEP164Q9UPV0 1460 aa19.99■□□□□ 0.79
PDLIM5-217ENST00000512274 FANCD2Q9BXW9 1451 aa19.92■□□□□ 0.78
PDLIM5-217ENST00000512274 TRHP20396 242 aaPredicted RBP19.88■□□□□ 0.77
PDLIM5-217ENST00000512274 ARHGEF11O15085 1522 aa19.86■□□□□ 0.77
PDLIM5-217ENST00000512274 CYB5RLQ6IPT4 315 aa19.84■□□□□ 0.77
PDLIM5-217ENST00000512274 AEBP2Q6ZN18 517 aaPredicted RBP19.83■□□□□ 0.77
PDLIM5-217ENST00000512274 WIZO95785 1651 aa19.83■□□□□ 0.76
PDLIM5-217ENST00000512274 URB2Q14146 1524 aaKnown RBP19.81■□□□□ 0.76
PDLIM5-217ENST00000512274 CFTRP13569 1480 aa19.71■□□□□ 0.75
PDLIM5-217ENST00000512274 ZNF608Q9ULD9 1512 aaPredicted RBP19.7■□□□□ 0.74
PDLIM5-217ENST00000512274 ARAP1Q96P48 1450 aa19.62■□□□□ 0.73
PDLIM5-217ENST00000512274 IFT140Q96RY7 1462 aa19.59■□□□□ 0.73
PDLIM5-217ENST00000512274 CHD1O14646 1710 aa19.58■□□□□ 0.72
PDLIM5-217ENST00000512274 EIF4G3O43432 1585 aaKnown RBP19.53■□□□□ 0.72
PDLIM5-217ENST00000512274 FBLN2P98095 1184 aa19.53■□□□□ 0.72
PDLIM5-217ENST00000512274 PRDM2Q13029 1718 aa19.52■□□□□ 0.72
PDLIM5-217ENST00000512274 TOPBP1Q92547 1522 aa19.46■□□□□ 0.71
PDLIM5-217ENST00000512274 AQRO60306 1485 aaKnown RBP eCLIP19.44■□□□□ 0.7
PDLIM5-217ENST00000512274 TOP2AP11388 1531 aaKnown RBP19.43■□□□□ 0.7
PDLIM5-217ENST00000512274 RSF1Q96T23 1441 aaPredicted RBP19.42■□□□□ 0.7
PDLIM5-217ENST00000512274 TARBP1Q13395 1621 aaKnown RBP19.33■□□□□ 0.68
PDLIM5-217ENST00000512274 ABCC8Q09428 1581 aa19.3■□□□□ 0.68
PDLIM5-217ENST00000512274 DNMBPQ6XZF7 1577 aa19.3■□□□□ 0.68
PDLIM5-217ENST00000512274 CCDC88BA6NC98 1476 aa19.27■□□□□ 0.67
PDLIM5-217ENST00000512274 CLASP1Q7Z460 1538 aa19.24■□□□□ 0.67
PDLIM5-217ENST00000512274 TDRD9Q8NDG6 1382 aaKnown RBP19.21■□□□□ 0.67
PDLIM5-217ENST00000512274 RAD54L2Q9Y4B4 1467 aa19.21■□□□□ 0.67
PDLIM5-217ENST00000512274 POLA1P09884 1462 aaPredicted RBP19.2■□□□□ 0.66
PDLIM5-217ENST00000512274 SNAPC4Q5SXM2 1469 aa19.2■□□□□ 0.66
PDLIM5-217ENST00000512274 CHMP7Q8WUX9 453 aaPredicted RBP19.19■□□□□ 0.66
PDLIM5-217ENST00000512274 SYNJ1O43426 1573 aa19.18■□□□□ 0.66
PDLIM5-217ENST00000512274 SOGA1O94964 1423 aa19.13■□□□□ 0.65
PDLIM5-217ENST00000512274 GAPVD1Q14C86 1478 aa19.13■□□□□ 0.65
PDLIM5-217ENST00000512274 MAGI1Q96QZ7 1491 aaPredicted RBP19.04■□□□□ 0.64
PDLIM5-217ENST00000512274 ILDR1Q86SU0 546 aaPredicted RBP19.04■□□□□ 0.64
PDLIM5-217ENST00000512274 SYNJ2O15056 1496 aa19.02■□□□□ 0.63
PDLIM5-217ENST00000512274 FGD5Q6ZNL6 1462 aa19.01■□□□□ 0.63
PDLIM5-217ENST00000512274 GRIN2BQ13224 1484 aa19■□□□□ 0.63
PDLIM5-217ENST00000512274 ERCC6L2Q5T890 1561 aa18.98■□□□□ 0.63
PDLIM5-217ENST00000512274 WDR97A6NE52 1622 aa18.98■□□□□ 0.63
PDLIM5-217ENST00000512274 PBRM1Q86U86 1689 aa18.95■□□□□ 0.62
PDLIM5-217ENST00000512274 KIF13AQ9H1H9 1805 aa18.95■□□□□ 0.62
PDLIM5-217ENST00000512274 CUX1P39880 1505 aa18.87■□□□□ 0.61
PDLIM5-217ENST00000512274 KDM4FA0A1W2PPD8 638 aa18.84■□□□□ 0.61
PDLIM5-217ENST00000512274 CEP170Q5SW79 1584 aa18.83■□□□□ 0.6
PDLIM5-217ENST00000512274 FAM69CQ0P6D2 419 aa18.78■□□□□ 0.6
PDLIM5-217ENST00000512274 GRIN2AQ12879 1464 aa18.77■□□□□ 0.59
PDLIM5-217ENST00000512274 ABCA5Q8WWZ7 1642 aa18.75■□□□□ 0.59
PDLIM5-217ENST00000512274 SHROOM2Q13796 1616 aa18.71■□□□□ 0.59
PDLIM5-217ENST00000512274 KDM6BO15054 1643 aa18.71■□□□□ 0.58
PDLIM5-217ENST00000512274 NUP160Q12769 1436 aa18.7■□□□□ 0.58
PDLIM5-217ENST00000512274 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
PDLIM5-217ENST00000512274 ABCC10Q5T3U5 1492 aa18.68■□□□□ 0.58
PDLIM5-217ENST00000512274 TSPOAP1O95153 1857 aa18.68■□□□□ 0.58
PDLIM5-217ENST00000512274 ADAMTS12P58397 1594 aa18.67■□□□□ 0.58
PDLIM5-217ENST00000512274 NPM1P06748 294 aaKnown RBP eCLIP18.65■□□□□ 0.58
PDLIM5-217ENST00000512274 PRG4Q92954 1404 aaPredicted RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms