RNA–Protein interactions for RNA: ENST00000512019.1

SMAD1-211, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 847 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-211ENST00000512019 NISCHQ9Y2I1 1504 aa47.05■■■■■ 5.12
SMAD1-211ENST00000512019 ABCC9O60706 1549 aa42.28■■■■■ 4.36
SMAD1-211ENST00000512019 CCDC180Q9P1Z9 1646 aa42.27■■■■■ 4.36
SMAD1-211ENST00000512019 RB1CC1Q8TDY2 1594 aa40.19■■■■■ 4.02
SMAD1-211ENST00000512019 NACADO15069 1562 aa39.89■■■■□ 3.98
SMAD1-211ENST00000512019 DCAF8L2P0C7V8 631 aa39.69■■■■□ 3.94
SMAD1-211ENST00000512019 DNAJC5BQ9UF47 199 aa39.68■■■■□ 3.94
SMAD1-211ENST00000512019 UNC13AQ9UPW8 1703 aa39.48■■■■□ 3.91
SMAD1-211ENST00000512019 PABPN1Q86U42 306 aaKnown RBP eCLIP39.33■■■■□ 3.89
SMAD1-211ENST00000512019 MYO15BQ96JP2 1530 aa39.3■■■■□ 3.88
SMAD1-211ENST00000512019 BICRAQ9NZM4 1560 aa39.11■■■■□ 3.85
SMAD1-211ENST00000512019 ZCCHC6Q5VYS8 1495 aaKnown RBP38.99■■■■□ 3.83
SMAD1-211ENST00000512019 DCAF1Q9Y4B6 1507 aa38.81■■■■□ 3.8
SMAD1-211ENST00000512019 SCRIBQ14160 1630 aa38.55■■■■□ 3.76
SMAD1-211ENST00000512019 SHROOM4Q9ULL8 1493 aa38.41■■■■□ 3.74
SMAD1-211ENST00000512019 CC2D2AQ9P2K1 1620 aa38.22■■■■□ 3.71
SMAD1-211ENST00000512019 EIF4G1Q04637 1599 aaKnown RBP38.1■■■■□ 3.69
SMAD1-211ENST00000512019 CECR2Q9BXF3 1484 aa38.04■■■■□ 3.68
SMAD1-211ENST00000512019 NCAPD3P42695 1498 aa36.82■■■■□ 3.48
SMAD1-211ENST00000512019 SMARCA4P51532 1647 aa36.75■■■■□ 3.47
SMAD1-211ENST00000512019 ATAD2BQ9ULI0 1458 aa36.73■■■■□ 3.47
SMAD1-211ENST00000512019 SMARCA2P51531 1590 aa36.61■■■■□ 3.45
SMAD1-211ENST00000512019 HMGXB3Q12766 1538 aa36.57■■■■□ 3.44
SMAD1-211ENST00000512019 BAZ1AQ9NRL2 1556 aaPredicted RBP36.5■■■■□ 3.43
SMAD1-211ENST00000512019 ERCC6Q03468 1493 aa36.44■■■■□ 3.42
SMAD1-211ENST00000512019 BAZ1BQ9UIG0 1483 aaKnown RBP36.37■■■■□ 3.41
SMAD1-211ENST00000512019 CUX2O14529 1486 aa36.37■■■■□ 3.41
SMAD1-211ENST00000512019 DNAJC5Q9H3Z4 198 aa36.36■■■■□ 3.41
SMAD1-211ENST00000512019 PEG3Q9GZU2 1588 aa36.35■■■■□ 3.41
SMAD1-211ENST00000512019 NESP48681 1621 aa36.34■■■■□ 3.41
SMAD1-211ENST00000512019 MROH2BQ7Z745 1585 aa36.29■■■■□ 3.4
SMAD1-211ENST00000512019 LAMC3Q9Y6N6 1575 aa36.02■■■■□ 3.36
SMAD1-211ENST00000512019 THOC2Q8NI27 1593 aaKnown RBP35.99■■■■□ 3.35
SMAD1-211ENST00000512019 KIF21AQ7Z4S6 1674 aa35.94■■■■□ 3.34
SMAD1-211ENST00000512019 WIZO95785 1651 aa35.91■■■■□ 3.34
SMAD1-211ENST00000512019 PDS5BQ9NTI5 1447 aa35.74■■■■□ 3.31
SMAD1-211ENST00000512019 CADPSQ9ULU8 1353 aa35.68■■■■□ 3.3
SMAD1-211ENST00000512019 MRC2Q9UBG0 1479 aa35.5■■■■□ 3.27
SMAD1-211ENST00000512019 RSF1Q96T23 1441 aaPredicted RBP35.49■■■■□ 3.27
SMAD1-211ENST00000512019 WDR62O43379 1518 aa35.44■■■■□ 3.26
SMAD1-211ENST00000512019 TOP2AP11388 1531 aaKnown RBP35.37■■■■□ 3.25
SMAD1-211ENST00000512019 CEP164Q9UPV0 1460 aa35.35■■■■□ 3.25
SMAD1-211ENST00000512019 FANCD2Q9BXW9 1451 aa35.31■■■■□ 3.24
SMAD1-211ENST00000512019 CFTRP13569 1480 aa35.29■■■■□ 3.24
SMAD1-211ENST00000512019 PRDM2Q13029 1718 aa35.1■■■■□ 3.21
SMAD1-211ENST00000512019 URB2Q14146 1524 aaKnown RBP35.07■■■■□ 3.21
SMAD1-211ENST00000512019 SUPT5HO00267 1087 aaKnown RBP35.02■■■■□ 3.2
SMAD1-211ENST00000512019 CCDC88BA6NC98 1476 aa34.97■■■■□ 3.19
SMAD1-211ENST00000512019 TRIM41Q8WV44 630 aa34.8■■■■□ 3.16
SMAD1-211ENST00000512019 TOPBP1Q92547 1522 aa34.67■■■■□ 3.14
SMAD1-211ENST00000512019 OSCARQ8IYS5 282 aa34.67■■■■□ 3.14
SMAD1-211ENST00000512019 ZNF608Q9ULD9 1512 aaPredicted RBP34.65■■■■□ 3.14
SMAD1-211ENST00000512019 IFT140Q96RY7 1462 aa34.63■■■■□ 3.13
SMAD1-211ENST00000512019 DNMBPQ6XZF7 1577 aa34.55■■■■□ 3.12
SMAD1-211ENST00000512019 ABCC8Q09428 1581 aa34.51■■■■□ 3.12
SMAD1-211ENST00000512019 EIF4G3O43432 1585 aaKnown RBP34.49■■■■□ 3.11
SMAD1-211ENST00000512019 TARBP1Q13395 1621 aaKnown RBP34.41■■■■□ 3.1
SMAD1-211ENST00000512019 RIMBP3CA6NJZ7 1639 aa34.37■■■■□ 3.09
SMAD1-211ENST00000512019 RIMBP3BA6NNM3 1639 aa34.37■■■■□ 3.09
SMAD1-211ENST00000512019 RIMBP3Q9UFD9 1639 aa34.37■■■■□ 3.09
SMAD1-211ENST00000512019 AQRO60306 1485 aaKnown RBP eCLIP34.31■■■■□ 3.08
SMAD1-211ENST00000512019 POLA1P09884 1462 aaPredicted RBP34.31■■■■□ 3.08
SMAD1-211ENST00000512019 CHD1O14646 1710 aa34.3■■■■□ 3.08
SMAD1-211ENST00000512019 RAD54L2Q9Y4B4 1467 aa34.22■■■■□ 3.07
SMAD1-211ENST00000512019 ARHGEF11O15085 1522 aa34.2■■■■□ 3.07
SMAD1-211ENST00000512019 SOGA1O94964 1423 aa34.12■■■■□ 3.05
SMAD1-211ENST00000512019 FGD5Q6ZNL6 1462 aa34.11■■■■□ 3.05
SMAD1-211ENST00000512019 CUX1P39880 1505 aa34.09■■■■□ 3.05
SMAD1-211ENST00000512019 TDRD9Q8NDG6 1382 aaKnown RBP34.08■■■■□ 3.05
SMAD1-211ENST00000512019 FBLN2P98095 1184 aa34.04■■■■□ 3.04
SMAD1-211ENST00000512019 WDR97A6NE52 1622 aa33.97■■■■□ 3.03
SMAD1-211ENST00000512019 SNAPC4Q5SXM2 1469 aa33.96■■■■□ 3.03
SMAD1-211ENST00000512019 CYB5RLQ6IPT4 315 aa33.9■■■■□ 3.02
SMAD1-211ENST00000512019 ARAP1Q96P48 1450 aa33.88■■■■□ 3.01
SMAD1-211ENST00000512019 PBRM1Q86U86 1689 aa33.84■■■■□ 3.01
SMAD1-211ENST00000512019 GRIN2BQ13224 1484 aa33.82■■■■□ 3.01
SMAD1-211ENST00000512019 MAGI1Q96QZ7 1491 aaPredicted RBP33.82■■■■□ 3.01
SMAD1-211ENST00000512019 CLASP1Q7Z460 1538 aa33.81■■■■□ 3
SMAD1-211ENST00000512019 SYNJ1O43426 1573 aa33.76■■■□□ 2.99
SMAD1-211ENST00000512019 CHMP7Q8WUX9 453 aaPredicted RBP33.75■■■□□ 2.99
SMAD1-211ENST00000512019 SYNJ2O15056 1496 aa33.72■■■□□ 2.99
SMAD1-211ENST00000512019 GAPVD1Q14C86 1478 aa33.72■■■□□ 2.99
SMAD1-211ENST00000512019 ABCA5Q8WWZ7 1642 aa33.71■■■□□ 2.99
SMAD1-211ENST00000512019 ABCA10Q8WWZ4 1543 aa33.69■■■□□ 2.98
SMAD1-211ENST00000512019 BIVM-ERCC5R4GMW8 1640 aa33.57■■■□□ 2.97
SMAD1-211ENST00000512019 TOP2BQ02880 1626 aa33.53■■■□□ 2.96
SMAD1-211ENST00000512019 TRHP20396 242 aaPredicted RBP33.52■■■□□ 2.96
SMAD1-211ENST00000512019 WRNQ14191 1432 aaPredicted RBP eCLIP33.49■■■□□ 2.95
SMAD1-211ENST00000512019 ADAMTS12P58397 1594 aa33.45■■■□□ 2.95
SMAD1-211ENST00000512019 GRIN2AQ12879 1464 aa33.42■■■□□ 2.94
SMAD1-211ENST00000512019 CEP170Q5SW79 1584 aa33.36■■■□□ 2.93
SMAD1-211ENST00000512019 ERCC6L2Q5T890 1561 aa33.35■■■□□ 2.93
SMAD1-211ENST00000512019 NUP160Q12769 1436 aa33.29■■■□□ 2.92
SMAD1-211ENST00000512019 FHAD1B1AJZ9 1412 aa33.27■■■□□ 2.92
SMAD1-211ENST00000512019 ERICH3Q5RHP9 1530 aa33.26■■■□□ 2.91
SMAD1-211ENST00000512019 SHROOM2Q13796 1616 aa33.21■■■□□ 2.91
SMAD1-211ENST00000512019 CHIC1Q5VXU3 224 aa33.01■■■□□ 2.87
SMAD1-211ENST00000512019 RUSC2Q8N2Y8 1516 aa32.98■■■□□ 2.87
SMAD1-211ENST00000512019 PRG4Q92954 1404 aaPredicted RBP32.96■■■□□ 2.87
SMAD1-211ENST00000512019 JPH4Q96JJ6 628 aa32.91■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms