RNA–Protein interactions for RNA: ENST00000511871.1

SIM1-204, Transcript of SIM bHLH transcription factor 1, humanhuman

TSL 1 (best)

Gene SIM1, Length 1,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIM1-204ENST00000511871 NISCHQ9Y2I1 1504 aa39.1■■■■□ 3.85
SIM1-204ENST00000511871 CCDC180Q9P1Z9 1646 aa34.81■■■■□ 3.16
SIM1-204ENST00000511871 ABCC9O60706 1549 aa33.95■■■■□ 3.03
SIM1-204ENST00000511871 RB1CC1Q8TDY2 1594 aa32.7■■■□□ 2.83
SIM1-204ENST00000511871 NACADO15069 1562 aa32.67■■■□□ 2.82
SIM1-204ENST00000511871 ZCCHC6Q5VYS8 1495 aaKnown RBP32.58■■■□□ 2.81
SIM1-204ENST00000511871 DCAF8L2P0C7V8 631 aa32.58■■■□□ 2.81
SIM1-204ENST00000511871 MYO15BQ96JP2 1530 aa32.49■■■□□ 2.79
SIM1-204ENST00000511871 DCAF1Q9Y4B6 1507 aa32.37■■■□□ 2.77
SIM1-204ENST00000511871 UNC13AQ9UPW8 1703 aa32.09■■■□□ 2.73
SIM1-204ENST00000511871 BICRAQ9NZM4 1560 aa31.75■■■□□ 2.67
SIM1-204ENST00000511871 SCRIBQ14160 1630 aa31.72■■■□□ 2.67
SIM1-204ENST00000511871 PABPN1Q86U42 306 aaKnown RBP eCLIP31.71■■■□□ 2.67
SIM1-204ENST00000511871 SHROOM4Q9ULL8 1493 aa31.37■■■□□ 2.61
SIM1-204ENST00000511871 DNAJC5BQ9UF47 199 aa31.14■■■□□ 2.58
SIM1-204ENST00000511871 EIF4G1Q04637 1599 aaKnown RBP30.88■■■□□ 2.53
SIM1-204ENST00000511871 CC2D2AQ9P2K1 1620 aa30.76■■■□□ 2.51
SIM1-204ENST00000511871 CECR2Q9BXF3 1484 aa30.5■■■□□ 2.47
SIM1-204ENST00000511871 SMARCA4P51532 1647 aa30.36■■■□□ 2.45
SIM1-204ENST00000511871 BAZ1AQ9NRL2 1556 aaPredicted RBP30.31■■■□□ 2.44
SIM1-204ENST00000511871 ATAD2BQ9ULI0 1458 aa30.15■■■□□ 2.42
SIM1-204ENST00000511871 MROH2BQ7Z745 1585 aa30.14■■■□□ 2.42
SIM1-204ENST00000511871 NCAPD3P42695 1498 aa30.13■■■□□ 2.41
SIM1-204ENST00000511871 SMARCA2P51531 1590 aa30.13■■■□□ 2.41
SIM1-204ENST00000511871 PEG3Q9GZU2 1588 aa30.07■■■□□ 2.4
SIM1-204ENST00000511871 HMGXB3Q12766 1538 aa30.01■■■□□ 2.39
SIM1-204ENST00000511871 BAZ1BQ9UIG0 1483 aaKnown RBP29.9■■■□□ 2.38
SIM1-204ENST00000511871 WIZO95785 1651 aa29.86■■■□□ 2.37
SIM1-204ENST00000511871 RSF1Q96T23 1441 aaPredicted RBP29.79■■■□□ 2.36
SIM1-204ENST00000511871 TOP2AP11388 1531 aaKnown RBP29.51■■■□□ 2.31
SIM1-204ENST00000511871 NESP48681 1621 aa29.41■■■□□ 2.3
SIM1-204ENST00000511871 LAMC3Q9Y6N6 1575 aa29.36■■■□□ 2.29
SIM1-204ENST00000511871 CADPSQ9ULU8 1353 aa29.24■■■□□ 2.27
SIM1-204ENST00000511871 ERCC6Q03468 1493 aa29.24■■■□□ 2.27
SIM1-204ENST00000511871 CCDC88BA6NC98 1476 aa29.15■■■□□ 2.26
SIM1-204ENST00000511871 KIF21AQ7Z4S6 1674 aa29.13■■■□□ 2.25
SIM1-204ENST00000511871 PDS5BQ9NTI5 1447 aa29.11■■■□□ 2.25
SIM1-204ENST00000511871 CFTRP13569 1480 aa29.09■■■□□ 2.25
SIM1-204ENST00000511871 SUPT5HO00267 1087 aaKnown RBP29.01■■■□□ 2.23
SIM1-204ENST00000511871 PRDM2Q13029 1718 aa29■■■□□ 2.23
SIM1-204ENST00000511871 THOC2Q8NI27 1593 aaKnown RBP29■■■□□ 2.23
SIM1-204ENST00000511871 CUX2O14529 1486 aa28.95■■■□□ 2.22
SIM1-204ENST00000511871 FANCD2Q9BXW9 1451 aa28.91■■■□□ 2.22
SIM1-204ENST00000511871 CEP164Q9UPV0 1460 aa28.88■■■□□ 2.21
SIM1-204ENST00000511871 MRC2Q9UBG0 1479 aa28.83■■■□□ 2.21
SIM1-204ENST00000511871 WDR62O43379 1518 aa28.76■■■□□ 2.19
SIM1-204ENST00000511871 URB2Q14146 1524 aaKnown RBP28.64■■■□□ 2.18
SIM1-204ENST00000511871 TOPBP1Q92547 1522 aa28.47■■■□□ 2.15
SIM1-204ENST00000511871 ABCC8Q09428 1581 aa28.46■■■□□ 2.15
SIM1-204ENST00000511871 DNMBPQ6XZF7 1577 aa28.46■■■□□ 2.15
SIM1-204ENST00000511871 CUX1P39880 1505 aa28.27■■■□□ 2.12
SIM1-204ENST00000511871 IFT140Q96RY7 1462 aa28.27■■■□□ 2.12
SIM1-204ENST00000511871 POLA1P09884 1462 aaPredicted RBP28.22■■■□□ 2.11
SIM1-204ENST00000511871 TARBP1Q13395 1621 aaKnown RBP28.2■■■□□ 2.1
SIM1-204ENST00000511871 FGD5Q6ZNL6 1462 aa28.17■■■□□ 2.1
SIM1-204ENST00000511871 ZNF608Q9ULD9 1512 aaPredicted RBP28.15■■■□□ 2.1
SIM1-204ENST00000511871 RAD54L2Q9Y4B4 1467 aa28.1■■■□□ 2.09
SIM1-204ENST00000511871 SOGA1O94964 1423 aa28.1■■■□□ 2.09
SIM1-204ENST00000511871 BIVM-ERCC5R4GMW8 1640 aa28.08■■■□□ 2.09
SIM1-204ENST00000511871 WRNQ14191 1432 aaPredicted RBP eCLIP28.07■■■□□ 2.08
SIM1-204ENST00000511871 EIF4G3O43432 1585 aaKnown RBP28.07■■■□□ 2.08
SIM1-204ENST00000511871 TOP2BQ02880 1626 aa28.06■■■□□ 2.08
SIM1-204ENST00000511871 SYNJ1O43426 1573 aa28.05■■■□□ 2.08
SIM1-204ENST00000511871 DNAJC5Q9H3Z4 198 aa28.01■■■□□ 2.07
SIM1-204ENST00000511871 WDR97A6NE52 1622 aa28■■■□□ 2.07
SIM1-204ENST00000511871 AQRO60306 1485 aaKnown RBP eCLIP27.98■■■□□ 2.07
SIM1-204ENST00000511871 TDRD9Q8NDG6 1382 aaKnown RBP27.92■■■□□ 2.06
SIM1-204ENST00000511871 ABCA10Q8WWZ4 1543 aa27.9■■■□□ 2.06
SIM1-204ENST00000511871 ABCA5Q8WWZ7 1642 aa27.82■■■□□ 2.04
SIM1-204ENST00000511871 PBRM1Q86U86 1689 aa27.8■■■□□ 2.04
SIM1-204ENST00000511871 GAPVD1Q14C86 1478 aa27.78■■■□□ 2.04
SIM1-204ENST00000511871 GRIN2BQ13224 1484 aa27.77■■■□□ 2.04
SIM1-204ENST00000511871 CHD1O14646 1710 aa27.76■■■□□ 2.03
SIM1-204ENST00000511871 SNAPC4Q5SXM2 1469 aa27.73■■■□□ 2.03
SIM1-204ENST00000511871 OSCARQ8IYS5 282 aa27.72■■■□□ 2.03
SIM1-204ENST00000511871 MAGI1Q96QZ7 1491 aaPredicted RBP27.7■■■□□ 2.02
SIM1-204ENST00000511871 FBLN2P98095 1184 aa27.59■■■□□ 2.01
SIM1-204ENST00000511871 SYNJ2O15056 1496 aa27.58■■■□□ 2.01
SIM1-204ENST00000511871 ERICH3Q5RHP9 1530 aa27.56■■■□□ 2
SIM1-204ENST00000511871 ADAMTS12P58397 1594 aa27.54■■■□□ 2
SIM1-204ENST00000511871 CHMP7Q8WUX9 453 aaPredicted RBP27.53■■■□□ 2
SIM1-204ENST00000511871 KIF27Q86VH2 1401 aa27.48■■□□□ 1.99
SIM1-204ENST00000511871 FHAD1B1AJZ9 1412 aa27.46■■□□□ 1.99
SIM1-204ENST00000511871 GRIN2AQ12879 1464 aa27.42■■□□□ 1.98
SIM1-204ENST00000511871 CLASP1Q7Z460 1538 aa27.41■■□□□ 1.98
SIM1-204ENST00000511871 TRIM41Q8WV44 630 aa27.4■■□□□ 1.98
SIM1-204ENST00000511871 IGF1RP08069 1367 aa27.37■■□□□ 1.97
SIM1-204ENST00000511871 CUL7Q14999 1698 aa27.35■■□□□ 1.97
SIM1-204ENST00000511871 RIMBP3CA6NJZ7 1639 aa27.35■■□□□ 1.97
SIM1-204ENST00000511871 RIMBP3BA6NNM3 1639 aa27.35■■□□□ 1.97
SIM1-204ENST00000511871 RIMBP3Q9UFD9 1639 aa27.35■■□□□ 1.97
SIM1-204ENST00000511871 ARHGEF11O15085 1522 aa27.32■■□□□ 1.96
SIM1-204ENST00000511871 CEP170Q5SW79 1584 aa27.31■■□□□ 1.96
SIM1-204ENST00000511871 NUP160Q12769 1436 aa27.29■■□□□ 1.96
SIM1-204ENST00000511871 RUSC2Q8N2Y8 1516 aa27.28■■□□□ 1.96
SIM1-204ENST00000511871 CARMIL1Q5VZK9 1371 aa27.2■■□□□ 1.95
SIM1-204ENST00000511871 SHROOM2Q13796 1616 aa27.14■■□□□ 1.94
SIM1-204ENST00000511871 CHIC1Q5VXU3 224 aa27.12■■□□□ 1.93
SIM1-204ENST00000511871 ARAP1Q96P48 1450 aa27.1■■□□□ 1.93
SIM1-204ENST00000511871 RAPGEF2Q9Y4G8 1499 aa27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms