RNA–Protein interactions for RNA: ENST00000511332.1

COL6A6-203, Transcript of collagen type VI alpha 6 chain, humanhuman

TSL 5

Gene COL6A6, Length 778 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6-203ENST00000511332 NISCHQ9Y2I1 1504 aa31.01■■■□□ 2.55
COL6A6-203ENST00000511332 CCDC180Q9P1Z9 1646 aa27.66■■■□□ 2.02
COL6A6-203ENST00000511332 ABCC9O60706 1549 aa26.66■■□□□ 1.86
COL6A6-203ENST00000511332 ZCCHC6Q5VYS8 1495 aaKnown RBP25.91■■□□□ 1.74
COL6A6-203ENST00000511332 NACADO15069 1562 aa25.86■■□□□ 1.73
COL6A6-203ENST00000511332 RB1CC1Q8TDY2 1594 aa25.86■■□□□ 1.73
COL6A6-203ENST00000511332 MYO15BQ96JP2 1530 aa25.77■■□□□ 1.72
COL6A6-203ENST00000511332 DCAF1Q9Y4B6 1507 aa25.73■■□□□ 1.71
COL6A6-203ENST00000511332 DCAF8L2P0C7V8 631 aa25.65■■□□□ 1.7
COL6A6-203ENST00000511332 UNC13AQ9UPW8 1703 aa25.35■■□□□ 1.65
COL6A6-203ENST00000511332 SCRIBQ14160 1630 aa25.14■■□□□ 1.61
COL6A6-203ENST00000511332 BICRAQ9NZM4 1560 aa25.01■■□□□ 1.59
COL6A6-203ENST00000511332 SHROOM4Q9ULL8 1493 aa24.87■■□□□ 1.57
COL6A6-203ENST00000511332 PABPN1Q86U42 306 aaKnown RBP eCLIP24.83■■□□□ 1.57
COL6A6-203ENST00000511332 EIF4G1Q04637 1599 aaKnown RBP24.35■■□□□ 1.49
COL6A6-203ENST00000511332 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
COL6A6-203ENST00000511332 DNAJC5BQ9UF47 199 aa24.14■■□□□ 1.45
COL6A6-203ENST00000511332 SMARCA4P51532 1647 aa24.09■■□□□ 1.45
COL6A6-203ENST00000511332 BAZ1AQ9NRL2 1556 aaPredicted RBP24.08■■□□□ 1.44
COL6A6-203ENST00000511332 CECR2Q9BXF3 1484 aa24.07■■□□□ 1.44
COL6A6-203ENST00000511332 SMARCA2P51531 1590 aa23.89■■□□□ 1.41
COL6A6-203ENST00000511332 MROH2BQ7Z745 1585 aa23.87■■□□□ 1.41
COL6A6-203ENST00000511332 PEG3Q9GZU2 1588 aa23.86■■□□□ 1.41
COL6A6-203ENST00000511332 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
COL6A6-203ENST00000511332 HMGXB3Q12766 1538 aa23.78■■□□□ 1.4
COL6A6-203ENST00000511332 NCAPD3P42695 1498 aa23.77■■□□□ 1.4
COL6A6-203ENST00000511332 WIZO95785 1651 aa23.69■■□□□ 1.38
COL6A6-203ENST00000511332 BAZ1BQ9UIG0 1483 aaKnown RBP23.68■■□□□ 1.38
COL6A6-203ENST00000511332 RSF1Q96T23 1441 aaPredicted RBP23.64■■□□□ 1.37
COL6A6-203ENST00000511332 TOP2AP11388 1531 aaKnown RBP23.47■■□□□ 1.35
COL6A6-203ENST00000511332 LAMC3Q9Y6N6 1575 aa23.22■■□□□ 1.31
COL6A6-203ENST00000511332 NESP48681 1621 aa23.12■■□□□ 1.29
COL6A6-203ENST00000511332 PRDM2Q13029 1718 aa23.1■■□□□ 1.29
COL6A6-203ENST00000511332 CCDC88BA6NC98 1476 aa23.1■■□□□ 1.29
COL6A6-203ENST00000511332 SUPT5HO00267 1087 aaKnown RBP23.09■■□□□ 1.29
COL6A6-203ENST00000511332 CADPSQ9ULU8 1353 aa23.06■■□□□ 1.28
COL6A6-203ENST00000511332 ERCC6Q03468 1493 aa23.02■■□□□ 1.28
COL6A6-203ENST00000511332 KIF21AQ7Z4S6 1674 aa23.01■■□□□ 1.27
COL6A6-203ENST00000511332 CFTRP13569 1480 aa23.01■■□□□ 1.27
COL6A6-203ENST00000511332 PDS5BQ9NTI5 1447 aa22.97■■□□□ 1.27
COL6A6-203ENST00000511332 THOC2Q8NI27 1593 aaKnown RBP22.86■■□□□ 1.25
COL6A6-203ENST00000511332 FANCD2Q9BXW9 1451 aa22.85■■□□□ 1.25
COL6A6-203ENST00000511332 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
COL6A6-203ENST00000511332 MRC2Q9UBG0 1479 aa22.76■■□□□ 1.23
COL6A6-203ENST00000511332 CUX2O14529 1486 aa22.73■■□□□ 1.23
COL6A6-203ENST00000511332 WDR62O43379 1518 aa22.71■■□□□ 1.23
COL6A6-203ENST00000511332 URB2Q14146 1524 aaKnown RBP22.6■■□□□ 1.21
COL6A6-203ENST00000511332 DNMBPQ6XZF7 1577 aa22.56■■□□□ 1.2
COL6A6-203ENST00000511332 ABCC8Q09428 1581 aa22.55■■□□□ 1.2
COL6A6-203ENST00000511332 TOPBP1Q92547 1522 aa22.52■■□□□ 1.19
COL6A6-203ENST00000511332 CUX1P39880 1505 aa22.41■■□□□ 1.18
COL6A6-203ENST00000511332 BIVM-ERCC5R4GMW8 1640 aa22.37■■□□□ 1.17
COL6A6-203ENST00000511332 TOP2BQ02880 1626 aa22.33■■□□□ 1.17
COL6A6-203ENST00000511332 POLA1P09884 1462 aaPredicted RBP22.33■■□□□ 1.16
COL6A6-203ENST00000511332 IFT140Q96RY7 1462 aa22.33■■□□□ 1.16
COL6A6-203ENST00000511332 WRNQ14191 1432 aaPredicted RBP eCLIP22.32■■□□□ 1.16
COL6A6-203ENST00000511332 FGD5Q6ZNL6 1462 aa22.31■■□□□ 1.16
COL6A6-203ENST00000511332 SYNJ1O43426 1573 aa22.3■■□□□ 1.16
COL6A6-203ENST00000511332 TARBP1Q13395 1621 aaKnown RBP22.29■■□□□ 1.16
COL6A6-203ENST00000511332 WDR97A6NE52 1622 aa22.24■■□□□ 1.15
COL6A6-203ENST00000511332 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
COL6A6-203ENST00000511332 SOGA1O94964 1423 aa22.19■■□□□ 1.14
COL6A6-203ENST00000511332 RAD54L2Q9Y4B4 1467 aa22.17■■□□□ 1.14
COL6A6-203ENST00000511332 ZNF608Q9ULD9 1512 aaPredicted RBP22.16■■□□□ 1.14
COL6A6-203ENST00000511332 ABCA10Q8WWZ4 1543 aa22.11■■□□□ 1.13
COL6A6-203ENST00000511332 ABCA5Q8WWZ7 1642 aa22.08■■□□□ 1.13
COL6A6-203ENST00000511332 PBRM1Q86U86 1689 aa22.07■■□□□ 1.12
COL6A6-203ENST00000511332 AQRO60306 1485 aaKnown RBP eCLIP22.03■■□□□ 1.12
COL6A6-203ENST00000511332 TDRD9Q8NDG6 1382 aaKnown RBP22■■□□□ 1.11
COL6A6-203ENST00000511332 GAPVD1Q14C86 1478 aa21.98■■□□□ 1.11
COL6A6-203ENST00000511332 GRIN2BQ13224 1484 aa21.96■■□□□ 1.11
COL6A6-203ENST00000511332 CHD1O14646 1710 aa21.93■■□□□ 1.1
COL6A6-203ENST00000511332 MAGI1Q96QZ7 1491 aaPredicted RBP21.92■■□□□ 1.1
COL6A6-203ENST00000511332 SNAPC4Q5SXM2 1469 aa21.9■■□□□ 1.1
COL6A6-203ENST00000511332 ERICH3Q5RHP9 1530 aa21.89■■□□□ 1.09
COL6A6-203ENST00000511332 KIF27Q86VH2 1401 aa21.85■■□□□ 1.09
COL6A6-203ENST00000511332 ADAMTS12P58397 1594 aa21.85■■□□□ 1.09
COL6A6-203ENST00000511332 TRIM41Q8WV44 630 aa21.84■■□□□ 1.09
COL6A6-203ENST00000511332 SYNJ2O15056 1496 aa21.82■■□□□ 1.08
COL6A6-203ENST00000511332 CUL7Q14999 1698 aa21.8■■□□□ 1.08
COL6A6-203ENST00000511332 FHAD1B1AJZ9 1412 aa21.73■■□□□ 1.07
COL6A6-203ENST00000511332 GRIN2AQ12879 1464 aa21.7■■□□□ 1.06
COL6A6-203ENST00000511332 FBLN2P98095 1184 aa21.69■■□□□ 1.06
COL6A6-203ENST00000511332 OSCARQ8IYS5 282 aa21.69■■□□□ 1.06
COL6A6-203ENST00000511332 CHMP7Q8WUX9 453 aaPredicted RBP21.68■■□□□ 1.06
COL6A6-203ENST00000511332 CHIC1Q5VXU3 224 aa21.66■■□□□ 1.06
COL6A6-203ENST00000511332 DNAJC5Q9H3Z4 198 aa21.65■■□□□ 1.06
COL6A6-203ENST00000511332 IGF1RP08069 1367 aa21.64■■□□□ 1.06
COL6A6-203ENST00000511332 RUSC2Q8N2Y8 1516 aa21.63■■□□□ 1.05
COL6A6-203ENST00000511332 CLASP1Q7Z460 1538 aa21.62■■□□□ 1.05
COL6A6-203ENST00000511332 EEA1Q15075 1411 aa21.6■■□□□ 1.05
COL6A6-203ENST00000511332 CEP170Q5SW79 1584 aa21.6■■□□□ 1.05
COL6A6-203ENST00000511332 NUP160Q12769 1436 aa21.56■■□□□ 1.04
COL6A6-203ENST00000511332 CARMIL1Q5VZK9 1371 aa21.55■■□□□ 1.04
COL6A6-203ENST00000511332 RAPGEF2Q9Y4G8 1499 aa21.51■■□□□ 1.03
COL6A6-203ENST00000511332 SHROOM2Q13796 1616 aa21.47■■□□□ 1.03
COL6A6-203ENST00000511332 RIMBP3CA6NJZ7 1639 aa21.47■■□□□ 1.03
COL6A6-203ENST00000511332 RIMBP3BA6NNM3 1639 aa21.47■■□□□ 1.03
COL6A6-203ENST00000511332 RIMBP3Q9UFD9 1639 aa21.47■■□□□ 1.03
COL6A6-203ENST00000511332 CTTNBP2Q8WZ74 1663 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms