RNA–Protein interactions for RNA: ENST00000508874.1

AMD1P3-201, Transcript of adenosylmethionine decarboxylase 1 pseudogene 3, humanhuman

BASIC

Gene AMD1P3, Length 994 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AMD1P3-201ENST00000508874 NISCHQ9Y2I1 1504 aa22.61■■□□□ 1.21
AMD1P3-201ENST00000508874 AEBP2Q6ZN18 517 aaPredicted RBP21.81■■□□□ 1.08
AMD1P3-201ENST00000508874 ABCC9O60706 1549 aa20.8■□□□□ 0.92
AMD1P3-201ENST00000508874 CHIC1Q5VXU3 224 aa20.38■□□□□ 0.85
AMD1P3-201ENST00000508874 DNAJC5BQ9UF47 199 aa20.31■□□□□ 0.84
AMD1P3-201ENST00000508874 CCDC180Q9P1Z9 1646 aa20.28■□□□□ 0.84
AMD1P3-201ENST00000508874 RB1CC1Q8TDY2 1594 aa19.3■□□□□ 0.68
AMD1P3-201ENST00000508874 PABPN1Q86U42 306 aaKnown RBP eCLIP19.19■□□□□ 0.66
AMD1P3-201ENST00000508874 NACADO15069 1562 aa19.16■□□□□ 0.66
AMD1P3-201ENST00000508874 UNC13AQ9UPW8 1703 aa19.14■□□□□ 0.66
AMD1P3-201ENST00000508874 DNAJC5Q9H3Z4 198 aa19.09■□□□□ 0.65
AMD1P3-201ENST00000508874 DCAF8L2P0C7V8 631 aa19.04■□□□□ 0.64
AMD1P3-201ENST00000508874 BICRAQ9NZM4 1560 aa18.95■□□□□ 0.62
AMD1P3-201ENST00000508874 MYO15BQ96JP2 1530 aa18.9■□□□□ 0.62
AMD1P3-201ENST00000508874 ZCCHC6Q5VYS8 1495 aaKnown RBP18.76■□□□□ 0.59
AMD1P3-201ENST00000508874 CECR2Q9BXF3 1484 aa18.76■□□□□ 0.59
AMD1P3-201ENST00000508874 CC2D2AQ9P2K1 1620 aa18.75■□□□□ 0.59
AMD1P3-201ENST00000508874 DCAF1Q9Y4B6 1507 aa18.67■□□□□ 0.58
AMD1P3-201ENST00000508874 SENP3Q9H4L4 574 aaPredicted RBP18.65■□□□□ 0.58
AMD1P3-201ENST00000508874 SCRIBQ14160 1630 aa18.49■□□□□ 0.55
AMD1P3-201ENST00000508874 SHROOM4Q9ULL8 1493 aa18.49■□□□□ 0.55
AMD1P3-201ENST00000508874 EIF4G1Q04637 1599 aaKnown RBP18.47■□□□□ 0.55
AMD1P3-201ENST00000508874 PHF23Q9BUL5 403 aaPredicted RBP18.35■□□□□ 0.53
AMD1P3-201ENST00000508874 CUX2O14529 1486 aa18.13■□□□□ 0.49
AMD1P3-201ENST00000508874 TRIM41Q8WV44 630 aa17.98■□□□□ 0.47
AMD1P3-201ENST00000508874 ERCC6Q03468 1493 aa17.91■□□□□ 0.46
AMD1P3-201ENST00000508874 NCAPD3P42695 1498 aa17.69■□□□□ 0.42
AMD1P3-201ENST00000508874 NESP48681 1621 aa17.69■□□□□ 0.42
AMD1P3-201ENST00000508874 THOC2Q8NI27 1593 aaKnown RBP17.67■□□□□ 0.42
AMD1P3-201ENST00000508874 ATAD2BQ9ULI0 1458 aa17.64■□□□□ 0.41
AMD1P3-201ENST00000508874 SMARCA4P51532 1647 aa17.63■□□□□ 0.41
AMD1P3-201ENST00000508874 SMARCA2P51531 1590 aa17.59■□□□□ 0.41
AMD1P3-201ENST00000508874 HMGXB3Q12766 1538 aa17.57■□□□□ 0.4
AMD1P3-201ENST00000508874 BAZ1AQ9NRL2 1556 aaPredicted RBP17.55■□□□□ 0.4
AMD1P3-201ENST00000508874 BAZ1BQ9UIG0 1483 aaKnown RBP17.48■□□□□ 0.39
AMD1P3-201ENST00000508874 KIF21AQ7Z4S6 1674 aa17.47■□□□□ 0.39
AMD1P3-201ENST00000508874 PEG3Q9GZU2 1588 aa17.46■□□□□ 0.39
AMD1P3-201ENST00000508874 FOXD1Q16676 465 aa17.43■□□□□ 0.38
AMD1P3-201ENST00000508874 MROH2BQ7Z745 1585 aa17.43■□□□□ 0.38
AMD1P3-201ENST00000508874 LAMC3Q9Y6N6 1575 aa17.3■□□□□ 0.36
AMD1P3-201ENST00000508874 WIZO95785 1651 aa17.21■□□□□ 0.35
AMD1P3-201ENST00000508874 RIMBP3CA6NJZ7 1639 aa17.21■□□□□ 0.35
AMD1P3-201ENST00000508874 RIMBP3BA6NNM3 1639 aa17.21■□□□□ 0.35
AMD1P3-201ENST00000508874 RIMBP3Q9UFD9 1639 aa17.21■□□□□ 0.35
AMD1P3-201ENST00000508874 PDS5BQ9NTI5 1447 aa17.19■□□□□ 0.34
AMD1P3-201ENST00000508874 CADPSQ9ULU8 1353 aa17.15■□□□□ 0.34
AMD1P3-201ENST00000508874 WDR62O43379 1518 aa17.14■□□□□ 0.33
AMD1P3-201ENST00000508874 MRC2Q9UBG0 1479 aa17.12■□□□□ 0.33
AMD1P3-201ENST00000508874 OSCARQ8IYS5 282 aa17.07■□□□□ 0.32
AMD1P3-201ENST00000508874 RSF1Q96T23 1441 aaPredicted RBP17.06■□□□□ 0.32
AMD1P3-201ENST00000508874 ARHGEF11O15085 1522 aa17.01■□□□□ 0.31
AMD1P3-201ENST00000508874 TOP2AP11388 1531 aaKnown RBP17.01■□□□□ 0.31
AMD1P3-201ENST00000508874 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
AMD1P3-201ENST00000508874 CFTRP13569 1480 aa16.97■□□□□ 0.31
AMD1P3-201ENST00000508874 FANCD2Q9BXW9 1451 aa16.97■□□□□ 0.31
AMD1P3-201ENST00000508874 TRHP20396 242 aaPredicted RBP16.88■□□□□ 0.29
AMD1P3-201ENST00000508874 URB2Q14146 1524 aaKnown RBP16.84■□□□□ 0.29
AMD1P3-201ENST00000508874 CYB5RLQ6IPT4 315 aa16.83■□□□□ 0.28
AMD1P3-201ENST00000508874 ARAP1Q96P48 1450 aa16.81■□□□□ 0.28
AMD1P3-201ENST00000508874 CCDC88BA6NC98 1476 aa16.8■□□□□ 0.28
AMD1P3-201ENST00000508874 PRDM2Q13029 1718 aa16.78■□□□□ 0.28
AMD1P3-201ENST00000508874 ZNF608Q9ULD9 1512 aaPredicted RBP16.75■□□□□ 0.27
AMD1P3-201ENST00000508874 CHD1O14646 1710 aa16.7■□□□□ 0.26
AMD1P3-201ENST00000508874 TOPBP1Q92547 1522 aa16.65■□□□□ 0.26
AMD1P3-201ENST00000508874 POTEDQ86YR6 584 aa16.65■□□□□ 0.26
AMD1P3-201ENST00000508874 IFT140Q96RY7 1462 aa16.65■□□□□ 0.26
AMD1P3-201ENST00000508874 EIF4G3O43432 1585 aaKnown RBP16.61■□□□□ 0.25
AMD1P3-201ENST00000508874 ABCC8Q09428 1581 aa16.6■□□□□ 0.25
AMD1P3-201ENST00000508874 DNMBPQ6XZF7 1577 aa16.6■□□□□ 0.25
AMD1P3-201ENST00000508874 ILDR1Q86SU0 546 aaPredicted RBP16.53■□□□□ 0.24
AMD1P3-201ENST00000508874 TARBP1Q13395 1621 aaKnown RBP16.5■□□□□ 0.23
AMD1P3-201ENST00000508874 POLA1P09884 1462 aaPredicted RBP16.48■□□□□ 0.23
AMD1P3-201ENST00000508874 AQRO60306 1485 aaKnown RBP eCLIP16.46■□□□□ 0.23
AMD1P3-201ENST00000508874 MSH5O43196 834 aa16.45■□□□□ 0.22
AMD1P3-201ENST00000508874 RAD54L2Q9Y4B4 1467 aa16.42■□□□□ 0.22
AMD1P3-201ENST00000508874 CLASP1Q7Z460 1538 aa16.4■□□□□ 0.22
AMD1P3-201ENST00000508874 SOGA1O94964 1423 aa16.39■□□□□ 0.21
AMD1P3-201ENST00000508874 FGD5Q6ZNL6 1462 aa16.39■□□□□ 0.21
AMD1P3-201ENST00000508874 FBLN2P98095 1184 aa16.38■□□□□ 0.21
AMD1P3-201ENST00000508874 CUX1P39880 1505 aa16.37■□□□□ 0.21
AMD1P3-201ENST00000508874 TDRD9Q8NDG6 1382 aaKnown RBP16.37■□□□□ 0.21
AMD1P3-201ENST00000508874 WDR97A6NE52 1622 aa16.34■□□□□ 0.21
AMD1P3-201ENST00000508874 SNAPC4Q5SXM2 1469 aa16.32■□□□□ 0.2
AMD1P3-201ENST00000508874 SUPT5HO00267 1087 aaKnown RBP16.29■□□□□ 0.2
AMD1P3-201ENST00000508874 KIF13AQ9H1H9 1805 aa16.26■□□□□ 0.19
AMD1P3-201ENST00000508874 GRIN2BQ13224 1484 aa16.26■□□□□ 0.19
AMD1P3-201ENST00000508874 MAGI1Q96QZ7 1491 aaPredicted RBP16.26■□□□□ 0.19
AMD1P3-201ENST00000508874 GAPVD1Q14C86 1478 aa16.22■□□□□ 0.19
AMD1P3-201ENST00000508874 CHMP7Q8WUX9 453 aaPredicted RBP16.21■□□□□ 0.19
AMD1P3-201ENST00000508874 SYNJ2O15056 1496 aa16.21■□□□□ 0.19
AMD1P3-201ENST00000508874 SYNJ1O43426 1573 aa16.21■□□□□ 0.18
AMD1P3-201ENST00000508874 ERCC6L2Q5T890 1561 aa16.21■□□□□ 0.18
AMD1P3-201ENST00000508874 PBRM1Q86U86 1689 aa16.2■□□□□ 0.18
AMD1P3-201ENST00000508874 ABCA10Q8WWZ4 1543 aa16.19■□□□□ 0.18
AMD1P3-201ENST00000508874 ABCA5Q8WWZ7 1642 aa16.18■□□□□ 0.18
AMD1P3-201ENST00000508874 KDM4FA0A1W2PPD8 638 aa16.15■□□□□ 0.18
AMD1P3-201ENST00000508874 PIAS4Q8N2W9 510 aaPredicted RBP16.13■□□□□ 0.17
AMD1P3-201ENST00000508874 WRNQ14191 1432 aaPredicted RBP eCLIP16.12■□□□□ 0.17
AMD1P3-201ENST00000508874 TOP2BQ02880 1626 aa16.11■□□□□ 0.17
AMD1P3-201ENST00000508874 BIVM-ERCC5R4GMW8 1640 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms