RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 NISCHQ9Y2I1 1504 aa32.6■■■□□ 2.81
HMGCS1-205ENST00000508319 CCDC180Q9P1Z9 1646 aa29.24■■■□□ 2.27
HMGCS1-205ENST00000508319 ABCC9O60706 1549 aa29.01■■■□□ 2.23
HMGCS1-205ENST00000508319 RB1CC1Q8TDY2 1594 aa27.71■■■□□ 2.03
HMGCS1-205ENST00000508319 NACADO15069 1562 aa27.56■■■□□ 2
HMGCS1-205ENST00000508319 DCAF8L2P0C7V8 631 aa27.29■■□□□ 1.96
HMGCS1-205ENST00000508319 MYO15BQ96JP2 1530 aa27.26■■□□□ 1.95
HMGCS1-205ENST00000508319 UNC13AQ9UPW8 1703 aa27.16■■□□□ 1.94
HMGCS1-205ENST00000508319 ZCCHC6Q5VYS8 1495 aaKnown RBP27.09■■□□□ 1.93
HMGCS1-205ENST00000508319 DNAJC5BQ9UF47 199 aa27.04■■□□□ 1.92
HMGCS1-205ENST00000508319 PABPN1Q86U42 306 aaKnown RBP eCLIP26.97■■□□□ 1.91
HMGCS1-205ENST00000508319 DCAF1Q9Y4B6 1507 aa26.96■■□□□ 1.91
HMGCS1-205ENST00000508319 BICRAQ9NZM4 1560 aa26.94■■□□□ 1.9
HMGCS1-205ENST00000508319 SCRIBQ14160 1630 aa26.62■■□□□ 1.85
HMGCS1-205ENST00000508319 SHROOM4Q9ULL8 1493 aa26.59■■□□□ 1.85
HMGCS1-205ENST00000508319 CC2D2AQ9P2K1 1620 aa26.25■■□□□ 1.79
HMGCS1-205ENST00000508319 EIF4G1Q04637 1599 aaKnown RBP26.24■■□□□ 1.79
HMGCS1-205ENST00000508319 CECR2Q9BXF3 1484 aa26.11■■□□□ 1.77
HMGCS1-205ENST00000508319 NCAPD3P42695 1498 aa25.43■■□□□ 1.66
HMGCS1-205ENST00000508319 SMARCA4P51532 1647 aa25.43■■□□□ 1.66
HMGCS1-205ENST00000508319 ATAD2BQ9ULI0 1458 aa25.38■■□□□ 1.65
HMGCS1-205ENST00000508319 AEBP2Q6ZN18 517 aaPredicted RBP25.34■■□□□ 1.65
HMGCS1-205ENST00000508319 SMARCA2P51531 1590 aa25.33■■□□□ 1.65
HMGCS1-205ENST00000508319 HMGXB3Q12766 1538 aa25.3■■□□□ 1.64
HMGCS1-205ENST00000508319 BAZ1AQ9NRL2 1556 aaPredicted RBP25.3■■□□□ 1.64
HMGCS1-205ENST00000508319 PEG3Q9GZU2 1588 aa25.2■■□□□ 1.62
HMGCS1-205ENST00000508319 BAZ1BQ9UIG0 1483 aaKnown RBP25.14■■□□□ 1.61
HMGCS1-205ENST00000508319 MROH2BQ7Z745 1585 aa25.12■■□□□ 1.61
HMGCS1-205ENST00000508319 ERCC6Q03468 1493 aa25.02■■□□□ 1.6
HMGCS1-205ENST00000508319 NESP48681 1621 aa24.99■■□□□ 1.59
HMGCS1-205ENST00000508319 CUX2O14529 1486 aa24.96■■□□□ 1.59
HMGCS1-205ENST00000508319 LAMC3Q9Y6N6 1575 aa24.85■■□□□ 1.57
HMGCS1-205ENST00000508319 WIZO95785 1651 aa24.85■■□□□ 1.57
HMGCS1-205ENST00000508319 THOC2Q8NI27 1593 aaKnown RBP24.76■■□□□ 1.55
HMGCS1-205ENST00000508319 KIF21AQ7Z4S6 1674 aa24.72■■□□□ 1.55
HMGCS1-205ENST00000508319 DNAJC5Q9H3Z4 198 aa24.7■■□□□ 1.54
HMGCS1-205ENST00000508319 PDS5BQ9NTI5 1447 aa24.65■■□□□ 1.54
HMGCS1-205ENST00000508319 RSF1Q96T23 1441 aaPredicted RBP24.64■■□□□ 1.54
HMGCS1-205ENST00000508319 CADPSQ9ULU8 1353 aa24.64■■□□□ 1.53
HMGCS1-205ENST00000508319 TOP2AP11388 1531 aaKnown RBP24.55■■□□□ 1.52
HMGCS1-205ENST00000508319 MRC2Q9UBG0 1479 aa24.47■■□□□ 1.51
HMGCS1-205ENST00000508319 WDR62O43379 1518 aa24.44■■□□□ 1.5
HMGCS1-205ENST00000508319 CFTRP13569 1480 aa24.43■■□□□ 1.5
HMGCS1-205ENST00000508319 CEP164Q9UPV0 1460 aa24.39■■□□□ 1.5
HMGCS1-205ENST00000508319 FANCD2Q9BXW9 1451 aa24.38■■□□□ 1.49
HMGCS1-205ENST00000508319 PRDM2Q13029 1718 aa24.27■■□□□ 1.48
HMGCS1-205ENST00000508319 CCDC88BA6NC98 1476 aa24.22■■□□□ 1.47
HMGCS1-205ENST00000508319 URB2Q14146 1524 aaKnown RBP24.19■■□□□ 1.46
HMGCS1-205ENST00000508319 TOPBP1Q92547 1522 aa23.95■■□□□ 1.43
HMGCS1-205ENST00000508319 IFT140Q96RY7 1462 aa23.89■■□□□ 1.42
HMGCS1-205ENST00000508319 DNMBPQ6XZF7 1577 aa23.89■■□□□ 1.41
HMGCS1-205ENST00000508319 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
HMGCS1-205ENST00000508319 ZNF608Q9ULD9 1512 aaPredicted RBP23.85■■□□□ 1.41
HMGCS1-205ENST00000508319 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
HMGCS1-205ENST00000508319 TARBP1Q13395 1621 aaKnown RBP23.76■■□□□ 1.39
HMGCS1-205ENST00000508319 OSCARQ8IYS5 282 aa23.75■■□□□ 1.39
HMGCS1-205ENST00000508319 POLA1P09884 1462 aaPredicted RBP23.72■■□□□ 1.39
HMGCS1-205ENST00000508319 TRIM41Q8WV44 630 aa23.65■■□□□ 1.38
HMGCS1-205ENST00000508319 AQRO60306 1485 aaKnown RBP eCLIP23.62■■□□□ 1.372e-8■■■■□ 23.8
HMGCS1-205ENST00000508319 CUX1P39880 1505 aa23.61■■□□□ 1.37
HMGCS1-205ENST00000508319 RAD54L2Q9Y4B4 1467 aa23.61■■□□□ 1.37
HMGCS1-205ENST00000508319 CHIC1Q5VXU3 224 aa23.59■■□□□ 1.37
HMGCS1-205ENST00000508319 FGD5Q6ZNL6 1462 aa23.59■■□□□ 1.37
HMGCS1-205ENST00000508319 CHD1O14646 1710 aa23.57■■□□□ 1.36
HMGCS1-205ENST00000508319 SUPT5HO00267 1087 aaKnown RBP23.56■■□□□ 1.36
HMGCS1-205ENST00000508319 SOGA1O94964 1423 aa23.55■■□□□ 1.36
HMGCS1-205ENST00000508319 WDR97A6NE52 1622 aa23.53■■□□□ 1.36
HMGCS1-205ENST00000508319 RIMBP3CA6NJZ7 1639 aa23.53■■□□□ 1.36
HMGCS1-205ENST00000508319 RIMBP3BA6NNM3 1639 aa23.53■■□□□ 1.36
HMGCS1-205ENST00000508319 RIMBP3Q9UFD9 1639 aa23.53■■□□□ 1.36
HMGCS1-205ENST00000508319 TDRD9Q8NDG6 1382 aaKnown RBP23.49■■□□□ 1.35
HMGCS1-205ENST00000508319 ARHGEF11O15085 1522 aa23.48■■□□□ 1.35
HMGCS1-205ENST00000508319 SNAPC4Q5SXM2 1469 aa23.43■■□□□ 1.34
HMGCS1-205ENST00000508319 GRIN2BQ13224 1484 aa23.36■■□□□ 1.33
HMGCS1-205ENST00000508319 MAGI1Q96QZ7 1491 aaPredicted RBP23.36■■□□□ 1.33
HMGCS1-205ENST00000508319 FBLN2P98095 1184 aa23.36■■□□□ 1.33
HMGCS1-205ENST00000508319 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
HMGCS1-205ENST00000508319 ABCA10Q8WWZ4 1543 aa23.33■■□□□ 1.33
HMGCS1-205ENST00000508319 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.32
HMGCS1-205ENST00000508319 GAPVD1Q14C86 1478 aa23.3■■□□□ 1.32
HMGCS1-205ENST00000508319 CLASP1Q7Z460 1538 aa23.3■■□□□ 1.32
HMGCS1-205ENST00000508319 BIVM-ERCC5R4GMW8 1640 aa23.3■■□□□ 1.32
HMGCS1-205ENST00000508319 SYNJ2O15056 1496 aa23.29■■□□□ 1.32
HMGCS1-205ENST00000508319 TOP2BQ02880 1626 aa23.28■■□□□ 1.32
HMGCS1-205ENST00000508319 SYNJ1O43426 1573 aa23.27■■□□□ 1.32
HMGCS1-205ENST00000508319 ARAP1Q96P48 1450 aa23.26■■□□□ 1.31
HMGCS1-205ENST00000508319 WRNQ14191 1432 aaPredicted RBP eCLIP23.24■■□□□ 1.31
HMGCS1-205ENST00000508319 CHMP7Q8WUX9 453 aaPredicted RBP23.23■■□□□ 1.31
HMGCS1-205ENST00000508319 CYB5RLQ6IPT4 315 aa23.18■■□□□ 1.3
HMGCS1-205ENST00000508319 ADAMTS12P58397 1594 aa23.14■■□□□ 1.29
HMGCS1-205ENST00000508319 GRIN2AQ12879 1464 aa23.09■■□□□ 1.29
HMGCS1-205ENST00000508319 ERICH3Q5RHP9 1530 aa23.04■■□□□ 1.28
HMGCS1-205ENST00000508319 CEP170Q5SW79 1584 aa23.02■■□□□ 1.28
HMGCS1-205ENST00000508319 FHAD1B1AJZ9 1412 aa23.01■■□□□ 1.27
HMGCS1-205ENST00000508319 NUP160Q12769 1436 aa23.01■■□□□ 1.27
HMGCS1-205ENST00000508319 ERCC6L2Q5T890 1561 aa22.93■■□□□ 1.26
HMGCS1-205ENST00000508319 SHROOM2Q13796 1616 aa22.93■■□□□ 1.26
HMGCS1-205ENST00000508319 TRHP20396 242 aaPredicted RBP22.85■■□□□ 1.25
HMGCS1-205ENST00000508319 RUSC2Q8N2Y8 1516 aa22.81■■□□□ 1.24
HMGCS1-205ENST00000508319 KIF27Q86VH2 1401 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms