RNA–Protein interactions for RNA: ENST00000508274.5

RAB28-205, Transcript of RAB28, member RAS oncogene family, humanhuman

TSL 1 (best)

Gene RAB28, Length 1,551 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB28-205ENST00000508274 NISCHQ9Y2I1 1504 aa35.48■■■■□ 3.27
RAB28-205ENST00000508274 CCDC180Q9P1Z9 1646 aa31.73■■■□□ 2.67
RAB28-205ENST00000508274 ABCC9O60706 1549 aa31.47■■■□□ 2.63
RAB28-205ENST00000508274 RB1CC1Q8TDY2 1594 aa30.04■■■□□ 2.4
RAB28-205ENST00000508274 NACADO15069 1562 aa29.89■■■□□ 2.38
RAB28-205ENST00000508274 DCAF8L2P0C7V8 631 aa29.8■■■□□ 2.36
RAB28-205ENST00000508274 MYO15BQ96JP2 1530 aa29.55■■■□□ 2.32
RAB28-205ENST00000508274 ZCCHC6Q5VYS8 1495 aaKnown RBP29.49■■■□□ 2.31
RAB28-205ENST00000508274 UNC13AQ9UPW8 1703 aa29.47■■■□□ 2.31
RAB28-205ENST00000508274 PABPN1Q86U42 306 aaKnown RBP eCLIP29.32■■■□□ 2.28
RAB28-205ENST00000508274 DCAF1Q9Y4B6 1507 aa29.29■■■□□ 2.28
RAB28-205ENST00000508274 DNAJC5BQ9UF47 199 aa29.25■■■□□ 2.27
RAB28-205ENST00000508274 BICRAQ9NZM4 1560 aa29.21■■■□□ 2.27
RAB28-205ENST00000508274 SCRIBQ14160 1630 aa28.98■■■□□ 2.23
RAB28-205ENST00000508274 SHROOM4Q9ULL8 1493 aa28.75■■■□□ 2.19
RAB28-205ENST00000508274 CC2D2AQ9P2K1 1620 aa28.45■■■□□ 2.14
RAB28-205ENST00000508274 EIF4G1Q04637 1599 aaKnown RBP28.45■■■□□ 2.14
RAB28-205ENST00000508274 CECR2Q9BXF3 1484 aa28.28■■■□□ 2.12
RAB28-205ENST00000508274 AEBP2Q6ZN18 517 aaPredicted RBP27.73■■■□□ 2.03
RAB28-205ENST00000508274 SMARCA4P51532 1647 aa27.65■■■□□ 2.02
RAB28-205ENST00000508274 NCAPD3P42695 1498 aa27.58■■■□□ 2.01
RAB28-205ENST00000508274 ATAD2BQ9ULI0 1458 aa27.57■■■□□ 2
RAB28-205ENST00000508274 BAZ1AQ9NRL2 1556 aaPredicted RBP27.52■■■□□ 2
RAB28-205ENST00000508274 SMARCA2P51531 1590 aa27.5■■□□□ 1.99
RAB28-205ENST00000508274 HMGXB3Q12766 1538 aa27.43■■□□□ 1.98
RAB28-205ENST00000508274 MROH2BQ7Z745 1585 aa27.38■■□□□ 1.97
RAB28-205ENST00000508274 PEG3Q9GZU2 1588 aa27.35■■□□□ 1.97
RAB28-205ENST00000508274 BAZ1BQ9UIG0 1483 aaKnown RBP27.32■■□□□ 1.96
RAB28-205ENST00000508274 NESP48681 1621 aa27.13■■□□□ 1.93
RAB28-205ENST00000508274 ERCC6Q03468 1493 aa27.11■■□□□ 1.93
RAB28-205ENST00000508274 WIZO95785 1651 aa27.09■■□□□ 1.93
RAB28-205ENST00000508274 CUX2O14529 1486 aa26.94■■□□□ 1.9
RAB28-205ENST00000508274 LAMC3Q9Y6N6 1575 aa26.94■■□□□ 1.9
RAB28-205ENST00000508274 RSF1Q96T23 1441 aaPredicted RBP26.88■■□□□ 1.89
RAB28-205ENST00000508274 CHIC1Q5VXU3 224 aa26.87■■□□□ 1.89
RAB28-205ENST00000508274 KIF21AQ7Z4S6 1674 aa26.82■■□□□ 1.88
RAB28-205ENST00000508274 THOC2Q8NI27 1593 aaKnown RBP26.81■■□□□ 1.88
RAB28-205ENST00000508274 CADPSQ9ULU8 1353 aa26.75■■□□□ 1.87
RAB28-205ENST00000508274 PDS5BQ9NTI5 1447 aa26.73■■□□□ 1.87
RAB28-205ENST00000508274 TOP2AP11388 1531 aaKnown RBP26.73■■□□□ 1.87
RAB28-205ENST00000508274 DNAJC5Q9H3Z4 198 aa26.58■■□□□ 1.85
RAB28-205ENST00000508274 CFTRP13569 1480 aa26.53■■□□□ 1.84
RAB28-205ENST00000508274 MRC2Q9UBG0 1479 aa26.52■■□□□ 1.84
RAB28-205ENST00000508274 FANCD2Q9BXW9 1451 aa26.49■■□□□ 1.83
RAB28-205ENST00000508274 CEP164Q9UPV0 1460 aa26.49■■□□□ 1.83
RAB28-205ENST00000508274 WDR62O43379 1518 aa26.47■■□□□ 1.83
RAB28-205ENST00000508274 CCDC88BA6NC98 1476 aa26.42■■□□□ 1.82
RAB28-205ENST00000508274 PRDM2Q13029 1718 aa26.37■■□□□ 1.81
RAB28-205ENST00000508274 URB2Q14146 1524 aaKnown RBP26.27■■□□□ 1.8
RAB28-205ENST00000508274 TOPBP1Q92547 1522 aa26.03■■□□□ 1.76
RAB28-205ENST00000508274 DNMBPQ6XZF7 1577 aa25.96■■□□□ 1.75
RAB28-205ENST00000508274 IFT140Q96RY7 1462 aa25.92■■□□□ 1.74
RAB28-205ENST00000508274 ABCC8Q09428 1581 aa25.92■■□□□ 1.74
RAB28-205ENST00000508274 ZNF608Q9ULD9 1512 aaPredicted RBP25.92■■□□□ 1.74
RAB28-205ENST00000508274 SUPT5HO00267 1087 aaKnown RBP25.91■■□□□ 1.74
RAB28-205ENST00000508274 EIF4G3O43432 1585 aaKnown RBP25.8■■□□□ 1.72
RAB28-205ENST00000508274 TARBP1Q13395 1621 aaKnown RBP25.79■■□□□ 1.72
RAB28-205ENST00000508274 POLA1P09884 1462 aaPredicted RBP25.78■■□□□ 1.72
RAB28-205ENST00000508274 OSCARQ8IYS5 282 aa25.73■■□□□ 1.71
RAB28-205ENST00000508274 CUX1P39880 1505 aa25.71■■□□□ 1.71
RAB28-205ENST00000508274 RAD54L2Q9Y4B4 1467 aa25.7■■□□□ 1.7
RAB28-205ENST00000508274 AQRO60306 1485 aaKnown RBP eCLIP25.69■■□□□ 1.7
RAB28-205ENST00000508274 FGD5Q6ZNL6 1462 aa25.67■■□□□ 1.7
RAB28-205ENST00000508274 SOGA1O94964 1423 aa25.63■■□□□ 1.69
RAB28-205ENST00000508274 TRIM41Q8WV44 630 aa25.58■■□□□ 1.69
RAB28-205ENST00000508274 CHD1O14646 1710 aa25.57■■□□□ 1.68
RAB28-205ENST00000508274 TDRD9Q8NDG6 1382 aaKnown RBP25.57■■□□□ 1.68
RAB28-205ENST00000508274 WDR97A6NE52 1622 aa25.51■■□□□ 1.68
RAB28-205ENST00000508274 RIMBP3CA6NJZ7 1639 aa25.47■■□□□ 1.67
RAB28-205ENST00000508274 RIMBP3BA6NNM3 1639 aa25.47■■□□□ 1.67
RAB28-205ENST00000508274 RIMBP3Q9UFD9 1639 aa25.47■■□□□ 1.67
RAB28-205ENST00000508274 SNAPC4Q5SXM2 1469 aa25.45■■□□□ 1.66
RAB28-205ENST00000508274 FBLN2P98095 1184 aa25.43■■□□□ 1.66
RAB28-205ENST00000508274 ARHGEF11O15085 1522 aa25.39■■□□□ 1.66
RAB28-205ENST00000508274 PBRM1Q86U86 1689 aa25.39■■□□□ 1.65
RAB28-205ENST00000508274 GRIN2BQ13224 1484 aa25.38■■□□□ 1.65
RAB28-205ENST00000508274 BIVM-ERCC5R4GMW8 1640 aa25.37■■□□□ 1.65
RAB28-205ENST00000508274 ABCA10Q8WWZ4 1543 aa25.37■■□□□ 1.65
RAB28-205ENST00000508274 SYNJ1O43426 1573 aa25.37■■□□□ 1.65
RAB28-205ENST00000508274 TOP2BQ02880 1626 aa25.36■■□□□ 1.65
RAB28-205ENST00000508274 MAGI1Q96QZ7 1491 aaPredicted RBP25.35■■□□□ 1.65
RAB28-205ENST00000508274 WRNQ14191 1432 aaPredicted RBP eCLIP25.35■■□□□ 1.65
RAB28-205ENST00000508274 ABCA5Q8WWZ7 1642 aa25.35■■□□□ 1.65
RAB28-205ENST00000508274 GAPVD1Q14C86 1478 aa25.35■■□□□ 1.65
RAB28-205ENST00000508274 SYNJ2O15056 1496 aa25.27■■□□□ 1.64
RAB28-205ENST00000508274 CHMP7Q8WUX9 453 aaPredicted RBP25.27■■□□□ 1.64
RAB28-205ENST00000508274 CLASP1Q7Z460 1538 aa25.25■■□□□ 1.63
RAB28-205ENST00000508274 ARAP1Q96P48 1450 aa25.18■■□□□ 1.62
RAB28-205ENST00000508274 CYB5RLQ6IPT4 315 aa25.14■■□□□ 1.62
RAB28-205ENST00000508274 ADAMTS12P58397 1594 aa25.14■■□□□ 1.61
RAB28-205ENST00000508274 GRIN2AQ12879 1464 aa25.08■■□□□ 1.61
RAB28-205ENST00000508274 ERICH3Q5RHP9 1530 aa25.06■■□□□ 1.6
RAB28-205ENST00000508274 FHAD1B1AJZ9 1412 aa25.02■■□□□ 1.6
RAB28-205ENST00000508274 CEP170Q5SW79 1584 aa25.01■■□□□ 1.59
RAB28-205ENST00000508274 NUP160Q12769 1436 aa24.97■■□□□ 1.59
RAB28-205ENST00000508274 ERCC6L2Q5T890 1561 aa24.92■■□□□ 1.58
RAB28-205ENST00000508274 SHROOM2Q13796 1616 aa24.86■■□□□ 1.57
RAB28-205ENST00000508274 KIF27Q86VH2 1401 aa24.82■■□□□ 1.56
RAB28-205ENST00000508274 IGF1RP08069 1367 aa24.79■■□□□ 1.56
RAB28-205ENST00000508274 RUSC2Q8N2Y8 1516 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms