RNA–Protein interactions for RNA: ENST00000508075.1

NEDD4-207, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 965 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-207ENST00000508075 NISCHQ9Y2I1 1504 aa35.83■■■■□ 3.33
NEDD4-207ENST00000508075 ABCC9O60706 1549 aa32.02■■■□□ 2.72
NEDD4-207ENST00000508075 CCDC180Q9P1Z9 1646 aa32.01■■■□□ 2.72
NEDD4-207ENST00000508075 RB1CC1Q8TDY2 1594 aa30.39■■■□□ 2.46
NEDD4-207ENST00000508075 DCAF8L2P0C7V8 631 aa30.37■■■□□ 2.45
NEDD4-207ENST00000508075 NACADO15069 1562 aa30.19■■■□□ 2.42
NEDD4-207ENST00000508075 UNC13AQ9UPW8 1703 aa29.91■■■□□ 2.38
NEDD4-207ENST00000508075 PABPN1Q86U42 306 aaKnown RBP eCLIP29.89■■■□□ 2.38
NEDD4-207ENST00000508075 DNAJC5BQ9UF47 199 aa29.89■■■□□ 2.38
NEDD4-207ENST00000508075 ZCCHC6Q5VYS8 1495 aaKnown RBP29.74■■■□□ 2.35
NEDD4-207ENST00000508075 MYO15BQ96JP2 1530 aa29.71■■■□□ 2.35
NEDD4-207ENST00000508075 BICRAQ9NZM4 1560 aa29.6■■■□□ 2.33
NEDD4-207ENST00000508075 DCAF1Q9Y4B6 1507 aa29.45■■■□□ 2.31
NEDD4-207ENST00000508075 SCRIBQ14160 1630 aa29.4■■■□□ 2.3
NEDD4-207ENST00000508075 SHROOM4Q9ULL8 1493 aa28.91■■■□□ 2.22
NEDD4-207ENST00000508075 CC2D2AQ9P2K1 1620 aa28.88■■■□□ 2.21
NEDD4-207ENST00000508075 EIF4G1Q04637 1599 aaKnown RBP28.82■■■□□ 2.2
NEDD4-207ENST00000508075 CECR2Q9BXF3 1484 aa28.72■■■□□ 2.19
NEDD4-207ENST00000508075 SMARCA4P51532 1647 aa27.96■■■□□ 2.07
NEDD4-207ENST00000508075 ATAD2BQ9ULI0 1458 aa27.89■■■□□ 2.06
NEDD4-207ENST00000508075 NCAPD3P42695 1498 aa27.86■■■□□ 2.05
NEDD4-207ENST00000508075 BAZ1AQ9NRL2 1556 aaPredicted RBP27.77■■■□□ 2.04
NEDD4-207ENST00000508075 SMARCA2P51531 1590 aa27.76■■■□□ 2.03
NEDD4-207ENST00000508075 MROH2BQ7Z745 1585 aa27.72■■■□□ 2.03
NEDD4-207ENST00000508075 HMGXB3Q12766 1538 aa27.68■■■□□ 2.02
NEDD4-207ENST00000508075 BAZ1BQ9UIG0 1483 aaKnown RBP27.64■■■□□ 2.02
NEDD4-207ENST00000508075 NESP48681 1621 aa27.59■■■□□ 2.01
NEDD4-207ENST00000508075 PEG3Q9GZU2 1588 aa27.56■■■□□ 2
NEDD4-207ENST00000508075 ERCC6Q03468 1493 aa27.55■■■□□ 2
NEDD4-207ENST00000508075 WIZO95785 1651 aa27.45■■□□□ 1.98
NEDD4-207ENST00000508075 CUX2O14529 1486 aa27.3■■□□□ 1.96
NEDD4-207ENST00000508075 KIF21AQ7Z4S6 1674 aa27.24■■□□□ 1.95
NEDD4-207ENST00000508075 LAMC3Q9Y6N6 1575 aa27.23■■□□□ 1.95
NEDD4-207ENST00000508075 AEBP2Q6ZN18 517 aaPredicted RBP27.21■■□□□ 1.95
NEDD4-207ENST00000508075 THOC2Q8NI27 1593 aaKnown RBP27.18■■□□□ 1.94
NEDD4-207ENST00000508075 RSF1Q96T23 1441 aaPredicted RBP27.16■■□□□ 1.94
NEDD4-207ENST00000508075 DNAJC5Q9H3Z4 198 aa27.12■■□□□ 1.93
NEDD4-207ENST00000508075 CADPSQ9ULU8 1353 aa27.07■■□□□ 1.92
NEDD4-207ENST00000508075 PDS5BQ9NTI5 1447 aa27.04■■□□□ 1.92
NEDD4-207ENST00000508075 TOP2AP11388 1531 aaKnown RBP26.98■■□□□ 1.91
NEDD4-207ENST00000508075 MRC2Q9UBG0 1479 aa26.87■■□□□ 1.89
NEDD4-207ENST00000508075 FANCD2Q9BXW9 1451 aa26.82■■□□□ 1.88
NEDD4-207ENST00000508075 CEP164Q9UPV0 1460 aa26.81■■□□□ 1.88
NEDD4-207ENST00000508075 CFTRP13569 1480 aa26.8■■□□□ 1.88
NEDD4-207ENST00000508075 WDR62O43379 1518 aa26.79■■□□□ 1.88
NEDD4-207ENST00000508075 CCDC88BA6NC98 1476 aa26.72■■□□□ 1.87
NEDD4-207ENST00000508075 URB2Q14146 1524 aaKnown RBP26.64■■□□□ 1.85
NEDD4-207ENST00000508075 PRDM2Q13029 1718 aa26.63■■□□□ 1.85
NEDD4-207ENST00000508075 TOPBP1Q92547 1522 aa26.35■■□□□ 1.81
NEDD4-207ENST00000508075 ZNF608Q9ULD9 1512 aaPredicted RBP26.32■■□□□ 1.8
NEDD4-207ENST00000508075 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
NEDD4-207ENST00000508075 DNMBPQ6XZF7 1577 aa26.24■■□□□ 1.79
NEDD4-207ENST00000508075 IFT140Q96RY7 1462 aa26.23■■□□□ 1.79
NEDD4-207ENST00000508075 TRIM41Q8WV44 630 aa26.22■■□□□ 1.79
NEDD4-207ENST00000508075 OSCARQ8IYS5 282 aa26.14■■□□□ 1.78
NEDD4-207ENST00000508075 EIF4G3O43432 1585 aaKnown RBP26.14■■□□□ 1.78
NEDD4-207ENST00000508075 ABCC8Q09428 1581 aa26.13■■□□□ 1.77
NEDD4-207ENST00000508075 TARBP1Q13395 1621 aaKnown RBP26.1■■□□□ 1.77
NEDD4-207ENST00000508075 AQRO60306 1485 aaKnown RBP eCLIP26.09■■□□□ 1.77
NEDD4-207ENST00000508075 POLA1P09884 1462 aaPredicted RBP26.09■■□□□ 1.77
NEDD4-207ENST00000508075 RAD54L2Q9Y4B4 1467 aa26.09■■□□□ 1.77
NEDD4-207ENST00000508075 CUX1P39880 1505 aa26.01■■□□□ 1.75
NEDD4-207ENST00000508075 FGD5Q6ZNL6 1462 aa25.99■■□□□ 1.75
NEDD4-207ENST00000508075 CHD1O14646 1710 aa25.98■■□□□ 1.75
NEDD4-207ENST00000508075 SOGA1O94964 1423 aa25.97■■□□□ 1.75
NEDD4-207ENST00000508075 TDRD9Q8NDG6 1382 aaKnown RBP25.96■■□□□ 1.75
NEDD4-207ENST00000508075 FBLN2P98095 1184 aa25.91■■□□□ 1.74
NEDD4-207ENST00000508075 RIMBP3CA6NJZ7 1639 aa25.9■■□□□ 1.74
NEDD4-207ENST00000508075 RIMBP3BA6NNM3 1639 aa25.9■■□□□ 1.74
NEDD4-207ENST00000508075 RIMBP3Q9UFD9 1639 aa25.9■■□□□ 1.74
NEDD4-207ENST00000508075 SNAPC4Q5SXM2 1469 aa25.8■■□□□ 1.72
NEDD4-207ENST00000508075 WDR97A6NE52 1622 aa25.79■■□□□ 1.72
NEDD4-207ENST00000508075 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
NEDD4-207ENST00000508075 PBRM1Q86U86 1689 aa25.71■■□□□ 1.71
NEDD4-207ENST00000508075 CHIC1Q5VXU3 224 aa25.7■■□□□ 1.7
NEDD4-207ENST00000508075 GRIN2BQ13224 1484 aa25.67■■□□□ 1.7
NEDD4-207ENST00000508075 SYNJ1O43426 1573 aa25.67■■□□□ 1.7
NEDD4-207ENST00000508075 CHMP7Q8WUX9 453 aaPredicted RBP25.65■■□□□ 1.7
NEDD4-207ENST00000508075 GAPVD1Q14C86 1478 aa25.65■■□□□ 1.7
NEDD4-207ENST00000508075 CYB5RLQ6IPT4 315 aa25.64■■□□□ 1.7
NEDD4-207ENST00000508075 ABCA5Q8WWZ7 1642 aa25.62■■□□□ 1.69
NEDD4-207ENST00000508075 ABCA10Q8WWZ4 1543 aa25.62■■□□□ 1.69
NEDD4-207ENST00000508075 MAGI1Q96QZ7 1491 aaPredicted RBP25.61■■□□□ 1.69
NEDD4-207ENST00000508075 BIVM-ERCC5R4GMW8 1640 aa25.6■■□□□ 1.69
NEDD4-207ENST00000508075 WRNQ14191 1432 aaPredicted RBP eCLIP25.6■■□□□ 1.69
NEDD4-207ENST00000508075 TOP2BQ02880 1626 aa25.59■■□□□ 1.69
NEDD4-207ENST00000508075 ARAP1Q96P48 1450 aa25.58■■□□□ 1.69
NEDD4-207ENST00000508075 SYNJ2O15056 1496 aa25.56■■□□□ 1.68
NEDD4-207ENST00000508075 CLASP1Q7Z460 1538 aa25.56■■□□□ 1.68
NEDD4-207ENST00000508075 ADAMTS12P58397 1594 aa25.42■■□□□ 1.66
NEDD4-207ENST00000508075 GRIN2AQ12879 1464 aa25.38■■□□□ 1.65
NEDD4-207ENST00000508075 CEP170Q5SW79 1584 aa25.35■■□□□ 1.65
NEDD4-207ENST00000508075 ERCC6L2Q5T890 1561 aa25.34■■□□□ 1.65
NEDD4-207ENST00000508075 TRHP20396 242 aaPredicted RBP25.31■■□□□ 1.64
NEDD4-207ENST00000508075 FHAD1B1AJZ9 1412 aa25.29■■□□□ 1.64
NEDD4-207ENST00000508075 ERICH3Q5RHP9 1530 aa25.27■■□□□ 1.64
NEDD4-207ENST00000508075 NUP160Q12769 1436 aa25.24■■□□□ 1.63
NEDD4-207ENST00000508075 SHROOM2Q13796 1616 aa25.14■■□□□ 1.61
NEDD4-207ENST00000508075 RUSC2Q8N2Y8 1516 aa25.06■■□□□ 1.6
NEDD4-207ENST00000508075 IGF1RP08069 1367 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms