RNA–Protein interactions for RNA: ENST00000508006.1

SNCB-204, Transcript of synuclein beta, humanhuman

TSL 2

Gene SNCB, Length 969 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCB-204ENST00000508006 NISCHQ9Y2I1 1504 aa53.32■■■■■ 6.13
SNCB-204ENST00000508006 ABCC9O60706 1549 aa48.27■■■■■ 5.32
SNCB-204ENST00000508006 CCDC180Q9P1Z9 1646 aa47.85■■■■■ 5.25
SNCB-204ENST00000508006 RB1CC1Q8TDY2 1594 aa45.77■■■■■ 4.92
SNCB-204ENST00000508006 DNAJC5BQ9UF47 199 aa45.54■■■■■ 4.88
SNCB-204ENST00000508006 DCAF8L2P0C7V8 631 aa45.39■■■■■ 4.86
SNCB-204ENST00000508006 NACADO15069 1562 aa45.37■■■■■ 4.85
SNCB-204ENST00000508006 PABPN1Q86U42 306 aaKnown RBP eCLIP44.98■■■■■ 4.79
SNCB-204ENST00000508006 UNC13AQ9UPW8 1703 aa44.67■■■■■ 4.74
SNCB-204ENST00000508006 MYO15BQ96JP2 1530 aa44.57■■■■■ 4.73
SNCB-204ENST00000508006 ZCCHC6Q5VYS8 1495 aaKnown RBP44.53■■■■■ 4.72
SNCB-204ENST00000508006 BICRAQ9NZM4 1560 aa44.35■■■■■ 4.69
SNCB-204ENST00000508006 DCAF1Q9Y4B6 1507 aa44.25■■■■■ 4.67
SNCB-204ENST00000508006 SHROOM4Q9ULL8 1493 aa43.73■■■■■ 4.59
SNCB-204ENST00000508006 SCRIBQ14160 1630 aa43.66■■■■■ 4.58
SNCB-204ENST00000508006 CC2D2AQ9P2K1 1620 aa43.54■■■■■ 4.56
SNCB-204ENST00000508006 CECR2Q9BXF3 1484 aa43.5■■■■■ 4.55
SNCB-204ENST00000508006 EIF4G1Q04637 1599 aaKnown RBP43.35■■■■■ 4.53
SNCB-204ENST00000508006 DNAJC5Q9H3Z4 198 aa42.09■■■■■ 4.33
SNCB-204ENST00000508006 NCAPD3P42695 1498 aa41.89■■■■■ 4.3
SNCB-204ENST00000508006 ERCC6Q03468 1493 aa41.75■■■■■ 4.27
SNCB-204ENST00000508006 ATAD2BQ9ULI0 1458 aa41.72■■■■■ 4.27
SNCB-204ENST00000508006 CUX2O14529 1486 aa41.68■■■■■ 4.26
SNCB-204ENST00000508006 SMARCA2P51531 1590 aa41.6■■■■■ 4.25
SNCB-204ENST00000508006 SMARCA4P51532 1647 aa41.58■■■■■ 4.25
SNCB-204ENST00000508006 HMGXB3Q12766 1538 aa41.5■■■■■ 4.23
SNCB-204ENST00000508006 BAZ1AQ9NRL2 1556 aaPredicted RBP41.36■■■■■ 4.21
SNCB-204ENST00000508006 BAZ1BQ9UIG0 1483 aaKnown RBP41.34■■■■■ 4.21
SNCB-204ENST00000508006 NESP48681 1621 aa41.34■■■■■ 4.21
SNCB-204ENST00000508006 PEG3Q9GZU2 1588 aa41.12■■■■■ 4.17
SNCB-204ENST00000508006 MROH2BQ7Z745 1585 aa41.03■■■■■ 4.16
SNCB-204ENST00000508006 LAMC3Q9Y6N6 1575 aa40.99■■■■■ 4.15
SNCB-204ENST00000508006 THOC2Q8NI27 1593 aaKnown RBP40.89■■■■■ 4.14
SNCB-204ENST00000508006 PDS5BQ9NTI5 1447 aa40.85■■■■■ 4.13
SNCB-204ENST00000508006 RSF1Q96T23 1441 aaPredicted RBP40.77■■■■■ 4.12
SNCB-204ENST00000508006 KIF21AQ7Z4S6 1674 aa40.77■■■■■ 4.12
SNCB-204ENST00000508006 CADPSQ9ULU8 1353 aa40.65■■■■■ 4.1
SNCB-204ENST00000508006 WIZO95785 1651 aa40.65■■■■■ 4.1
SNCB-204ENST00000508006 MRC2Q9UBG0 1479 aa40.45■■■■■ 4.07
SNCB-204ENST00000508006 WDR62O43379 1518 aa40.3■■■■■ 4.04
SNCB-204ENST00000508006 TOP2AP11388 1531 aaKnown RBP40.29■■■■■ 4.04
SNCB-204ENST00000508006 CEP164Q9UPV0 1460 aa40.26■■■■■ 4.03
SNCB-204ENST00000508006 TRIM41Q8WV44 630 aa40.24■■■■■ 4.03
SNCB-204ENST00000508006 FANCD2Q9BXW9 1451 aa40.18■■■■■ 4.02
SNCB-204ENST00000508006 CFTRP13569 1480 aa40.07■■■■■ 4.01
SNCB-204ENST00000508006 SUPT5HO00267 1087 aaKnown RBP40.02■■■■■ 4
SNCB-204ENST00000508006 OSCARQ8IYS5 282 aa39.89■■■■□ 3.98
SNCB-204ENST00000508006 URB2Q14146 1524 aaKnown RBP39.81■■■■□ 3.96
SNCB-204ENST00000508006 CCDC88BA6NC98 1476 aa39.76■■■■□ 3.96
SNCB-204ENST00000508006 PRDM2Q13029 1718 aa39.6■■■■□ 3.93
SNCB-204ENST00000508006 IFT140Q96RY7 1462 aa39.45■■■■□ 3.91
SNCB-204ENST00000508006 ZNF608Q9ULD9 1512 aaPredicted RBP39.39■■■■□ 3.9
SNCB-204ENST00000508006 TOPBP1Q92547 1522 aa39.35■■■■□ 3.89
SNCB-204ENST00000508006 ABCC8Q09428 1581 aa39.31■■■■□ 3.88
SNCB-204ENST00000508006 RIMBP3CA6NJZ7 1639 aa39.24■■■■□ 3.87
SNCB-204ENST00000508006 RIMBP3BA6NNM3 1639 aa39.24■■■■□ 3.87
SNCB-204ENST00000508006 RIMBP3Q9UFD9 1639 aa39.24■■■■□ 3.87
SNCB-204ENST00000508006 DNMBPQ6XZF7 1577 aa39.17■■■■□ 3.86
SNCB-204ENST00000508006 EIF4G3O43432 1585 aaKnown RBP39.12■■■■□ 3.85
SNCB-204ENST00000508006 ARHGEF11O15085 1522 aa39.09■■■■□ 3.85
SNCB-204ENST00000508006 AQRO60306 1485 aaKnown RBP eCLIP39.06■■■■□ 3.84
SNCB-204ENST00000508006 FBLN2P98095 1184 aa39.04■■■■□ 3.84
SNCB-204ENST00000508006 CYB5RLQ6IPT4 315 aa39■■■■□ 3.83
SNCB-204ENST00000508006 TARBP1Q13395 1621 aaKnown RBP38.98■■■■□ 3.83
SNCB-204ENST00000508006 POLA1P09884 1462 aaPredicted RBP38.92■■■■□ 3.82
SNCB-204ENST00000508006 CHD1O14646 1710 aa38.92■■■■□ 3.82
SNCB-204ENST00000508006 SOGA1O94964 1423 aa38.84■■■■□ 3.81
SNCB-204ENST00000508006 RAD54L2Q9Y4B4 1467 aa38.84■■■■□ 3.81
SNCB-204ENST00000508006 TDRD9Q8NDG6 1382 aaKnown RBP38.81■■■■□ 3.8
SNCB-204ENST00000508006 TRHP20396 242 aaPredicted RBP38.74■■■■□ 3.79
SNCB-204ENST00000508006 CHMP7Q8WUX9 453 aaPredicted RBP38.66■■■■□ 3.78
SNCB-204ENST00000508006 FGD5Q6ZNL6 1462 aa38.66■■■■□ 3.78
SNCB-204ENST00000508006 ARAP1Q96P48 1450 aa38.66■■■■□ 3.78
SNCB-204ENST00000508006 SNAPC4Q5SXM2 1469 aa38.61■■■■□ 3.77
SNCB-204ENST00000508006 WDR97A6NE52 1622 aa38.56■■■■□ 3.76
SNCB-204ENST00000508006 CUX1P39880 1505 aa38.54■■■■□ 3.76
SNCB-204ENST00000508006 GRIN2BQ13224 1484 aa38.49■■■■□ 3.75
SNCB-204ENST00000508006 MAGI1Q96QZ7 1491 aaPredicted RBP38.49■■■■□ 3.75
SNCB-204ENST00000508006 SYNJ1O43426 1573 aa38.46■■■■□ 3.75
SNCB-204ENST00000508006 WRNQ14191 1432 aaPredicted RBP eCLIP38.45■■■■□ 3.75
SNCB-204ENST00000508006 CLASP1Q7Z460 1538 aa38.41■■■■□ 3.74
SNCB-204ENST00000508006 BIVM-ERCC5R4GMW8 1640 aa38.39■■■■□ 3.74
SNCB-204ENST00000508006 SYNJ2O15056 1496 aa38.38■■■■□ 3.73
SNCB-204ENST00000508006 TOP2BQ02880 1626 aa38.37■■■■□ 3.73
SNCB-204ENST00000508006 GAPVD1Q14C86 1478 aa38.33■■■■□ 3.73
SNCB-204ENST00000508006 PBRM1Q86U86 1689 aa38.27■■■■□ 3.72
SNCB-204ENST00000508006 ABCA10Q8WWZ4 1543 aa38.18■■■■□ 3.7
SNCB-204ENST00000508006 ABCA5Q8WWZ7 1642 aa38.1■■■■□ 3.69
SNCB-204ENST00000508006 GRIN2AQ12879 1464 aa37.96■■■■□ 3.67
SNCB-204ENST00000508006 AEBP2Q6ZN18 517 aaPredicted RBP37.86■■■■□ 3.65
SNCB-204ENST00000508006 ADAMTS12P58397 1594 aa37.85■■■■□ 3.65
SNCB-204ENST00000508006 ERCC6L2Q5T890 1561 aa37.82■■■■□ 3.65
SNCB-204ENST00000508006 FHAD1B1AJZ9 1412 aa37.82■■■■□ 3.64
SNCB-204ENST00000508006 NUP160Q12769 1436 aa37.81■■■■□ 3.64
SNCB-204ENST00000508006 CEP170Q5SW79 1584 aa37.8■■■■□ 3.64
SNCB-204ENST00000508006 CHIC1Q5VXU3 224 aa37.72■■■■□ 3.63
SNCB-204ENST00000508006 ERICH3Q5RHP9 1530 aa37.71■■■■□ 3.63
SNCB-204ENST00000508006 SHROOM2Q13796 1616 aa37.64■■■■□ 3.62
SNCB-204ENST00000508006 KIF27Q86VH2 1401 aa37.62■■■■□ 3.61
SNCB-204ENST00000508006 JPH4Q96JJ6 628 aa37.6■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms