RNA–Protein interactions for RNA: ENST00000507355.5

POLR2J3-212, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 5

Gene POLR2J3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-212ENST00000507355 NISCHQ9Y2I1 1504 aa33.74■■■□□ 2.99
POLR2J3-212ENST00000507355 ABCC9O60706 1549 aa30.94■■■□□ 2.54
POLR2J3-212ENST00000507355 CCDC180Q9P1Z9 1646 aa30.47■■■□□ 2.47
POLR2J3-212ENST00000507355 DNAJC5BQ9UF47 199 aa29.35■■■□□ 2.29
POLR2J3-212ENST00000507355 RB1CC1Q8TDY2 1594 aa29.22■■■□□ 2.27
POLR2J3-212ENST00000507355 NACADO15069 1562 aa28.88■■■□□ 2.21
POLR2J3-212ENST00000507355 DCAF8L2P0C7V8 631 aa28.74■■■□□ 2.19
POLR2J3-212ENST00000507355 PABPN1Q86U42 306 aaKnown RBP eCLIP28.74■■■□□ 2.19
POLR2J3-212ENST00000507355 UNC13AQ9UPW8 1703 aa28.6■■■□□ 2.17
POLR2J3-212ENST00000507355 BICRAQ9NZM4 1560 aa28.38■■■□□ 2.13
POLR2J3-212ENST00000507355 MYO15BQ96JP2 1530 aa28.28■■■□□ 2.12
POLR2J3-212ENST00000507355 CC2D2AQ9P2K1 1620 aa27.91■■■□□ 2.06
POLR2J3-212ENST00000507355 CECR2Q9BXF3 1484 aa27.89■■■□□ 2.06
POLR2J3-212ENST00000507355 SHROOM4Q9ULL8 1493 aa27.89■■■□□ 2.05
POLR2J3-212ENST00000507355 ZCCHC6Q5VYS8 1495 aaKnown RBP27.88■■■□□ 2.05
POLR2J3-212ENST00000507355 SCRIBQ14160 1630 aa27.83■■■□□ 2.05
POLR2J3-212ENST00000507355 DCAF1Q9Y4B6 1507 aa27.79■■■□□ 2.04
POLR2J3-212ENST00000507355 EIF4G1Q04637 1599 aaKnown RBP27.73■■■□□ 2.03
POLR2J3-212ENST00000507355 DNAJC5Q9H3Z4 198 aa27.22■■□□□ 1.95
POLR2J3-212ENST00000507355 CUX2O14529 1486 aa26.77■■□□□ 1.88
POLR2J3-212ENST00000507355 ERCC6Q03468 1493 aa26.75■■□□□ 1.87
POLR2J3-212ENST00000507355 NCAPD3P42695 1498 aa26.65■■□□□ 1.86
POLR2J3-212ENST00000507355 ATAD2BQ9ULI0 1458 aa26.55■■□□□ 1.84
POLR2J3-212ENST00000507355 NESP48681 1621 aa26.47■■□□□ 1.83
POLR2J3-212ENST00000507355 SMARCA2P51531 1590 aa26.46■■□□□ 1.83
POLR2J3-212ENST00000507355 HMGXB3Q12766 1538 aa26.44■■□□□ 1.82
POLR2J3-212ENST00000507355 SMARCA4P51532 1647 aa26.44■■□□□ 1.82
POLR2J3-212ENST00000507355 BAZ1BQ9UIG0 1483 aaKnown RBP26.3■■□□□ 1.8
POLR2J3-212ENST00000507355 THOC2Q8NI27 1593 aaKnown RBP26.26■■□□□ 1.79
POLR2J3-212ENST00000507355 BAZ1AQ9NRL2 1556 aaPredicted RBP26.23■■□□□ 1.79
POLR2J3-212ENST00000507355 LAMC3Q9Y6N6 1575 aa26.16■■□□□ 1.78
POLR2J3-212ENST00000507355 PEG3Q9GZU2 1588 aa26.13■■□□□ 1.77
POLR2J3-212ENST00000507355 KIF21AQ7Z4S6 1674 aa26.12■■□□□ 1.77
POLR2J3-212ENST00000507355 MROH2BQ7Z745 1585 aa26.03■■□□□ 1.76
POLR2J3-212ENST00000507355 PDS5BQ9NTI5 1447 aa26.01■■□□□ 1.75
POLR2J3-212ENST00000507355 TRIM41Q8WV44 630 aa25.97■■□□□ 1.75
POLR2J3-212ENST00000507355 AEBP2Q6ZN18 517 aaPredicted RBP25.91■■□□□ 1.74
POLR2J3-212ENST00000507355 MRC2Q9UBG0 1479 aa25.85■■□□□ 1.73
POLR2J3-212ENST00000507355 CADPSQ9ULU8 1353 aa25.84■■□□□ 1.73
POLR2J3-212ENST00000507355 WDR62O43379 1518 aa25.78■■□□□ 1.72
POLR2J3-212ENST00000507355 WIZO95785 1651 aa25.73■■□□□ 1.71
POLR2J3-212ENST00000507355 CEP164Q9UPV0 1460 aa25.66■■□□□ 1.7
POLR2J3-212ENST00000507355 FANCD2Q9BXW9 1451 aa25.59■■□□□ 1.69
POLR2J3-212ENST00000507355 OSCARQ8IYS5 282 aa25.48■■□□□ 1.67
POLR2J3-212ENST00000507355 CFTRP13569 1480 aa25.46■■□□□ 1.67
POLR2J3-212ENST00000507355 URB2Q14146 1524 aaKnown RBP25.41■■□□□ 1.66
POLR2J3-212ENST00000507355 TOP2AP11388 1531 aaKnown RBP25.33■■□□□ 1.65
POLR2J3-212ENST00000507355 RSF1Q96T23 1441 aaPredicted RBP25.3■■□□□ 1.64
POLR2J3-212ENST00000507355 RIMBP3CA6NJZ7 1639 aa25.26■■□□□ 1.63
POLR2J3-212ENST00000507355 RIMBP3BA6NNM3 1639 aa25.26■■□□□ 1.63
POLR2J3-212ENST00000507355 RIMBP3Q9UFD9 1639 aa25.26■■□□□ 1.63
POLR2J3-212ENST00000507355 PRDM2Q13029 1718 aa25.23■■□□□ 1.63
POLR2J3-212ENST00000507355 ZNF608Q9ULD9 1512 aaPredicted RBP25.18■■□□□ 1.62
POLR2J3-212ENST00000507355 IFT140Q96RY7 1462 aa25.14■■□□□ 1.61
POLR2J3-212ENST00000507355 ARHGEF11O15085 1522 aa25.12■■□□□ 1.61
POLR2J3-212ENST00000507355 TOPBP1Q92547 1522 aa25.06■■□□□ 1.6
POLR2J3-212ENST00000507355 CCDC88BA6NC98 1476 aa25.05■■□□□ 1.6
POLR2J3-212ENST00000507355 EIF4G3O43432 1585 aaKnown RBP25.04■■□□□ 1.6
POLR2J3-212ENST00000507355 CYB5RLQ6IPT4 315 aa24.96■■□□□ 1.59
POLR2J3-212ENST00000507355 CHD1O14646 1710 aa24.95■■□□□ 1.58
POLR2J3-212ENST00000507355 DNMBPQ6XZF7 1577 aa24.93■■□□□ 1.58
POLR2J3-212ENST00000507355 ABCC8Q09428 1581 aa24.91■■□□□ 1.58
POLR2J3-212ENST00000507355 AQRO60306 1485 aaKnown RBP eCLIP24.89■■□□□ 1.574e-8■■■■□ 22.5
POLR2J3-212ENST00000507355 TARBP1Q13395 1621 aaKnown RBP24.86■■□□□ 1.57
POLR2J3-212ENST00000507355 TRHP20396 242 aaPredicted RBP24.85■■□□□ 1.57
POLR2J3-212ENST00000507355 FBLN2P98095 1184 aa24.85■■□□□ 1.57
POLR2J3-212ENST00000507355 ARAP1Q96P48 1450 aa24.84■■□□□ 1.57
POLR2J3-212ENST00000507355 POLA1P09884 1462 aaPredicted RBP24.77■■□□□ 1.56
POLR2J3-212ENST00000507355 RAD54L2Q9Y4B4 1467 aa24.71■■□□□ 1.55
POLR2J3-212ENST00000507355 CHIC1Q5VXU3 224 aa24.7■■□□□ 1.54
POLR2J3-212ENST00000507355 TDRD9Q8NDG6 1382 aaKnown RBP24.67■■□□□ 1.54
POLR2J3-212ENST00000507355 SNAPC4Q5SXM2 1469 aa24.64■■□□□ 1.54
POLR2J3-212ENST00000507355 SOGA1O94964 1423 aa24.64■■□□□ 1.54
POLR2J3-212ENST00000507355 CLASP1Q7Z460 1538 aa24.6■■□□□ 1.53
POLR2J3-212ENST00000507355 FGD5Q6ZNL6 1462 aa24.58■■□□□ 1.52
POLR2J3-212ENST00000507355 SYNJ1O43426 1573 aa24.55■■□□□ 1.52
POLR2J3-212ENST00000507355 CHMP7Q8WUX9 453 aaPredicted RBP24.54■■□□□ 1.52
POLR2J3-212ENST00000507355 WDR97A6NE52 1622 aa24.53■■□□□ 1.52
POLR2J3-212ENST00000507355 MAGI1Q96QZ7 1491 aaPredicted RBP24.51■■□□□ 1.51
POLR2J3-212ENST00000507355 CUX1P39880 1505 aa24.49■■□□□ 1.51
POLR2J3-212ENST00000507355 GRIN2BQ13224 1484 aa24.47■■□□□ 1.51
POLR2J3-212ENST00000507355 SYNJ2O15056 1496 aa24.45■■□□□ 1.5
POLR2J3-212ENST00000507355 PBRM1Q86U86 1689 aa24.41■■□□□ 1.5
POLR2J3-212ENST00000507355 GAPVD1Q14C86 1478 aa24.37■■□□□ 1.49
POLR2J3-212ENST00000507355 ABCA5Q8WWZ7 1642 aa24.26■■□□□ 1.47
POLR2J3-212ENST00000507355 SUPT5HO00267 1087 aaKnown RBP24.25■■□□□ 1.47
POLR2J3-212ENST00000507355 ABCA10Q8WWZ4 1543 aa24.23■■□□□ 1.47
POLR2J3-212ENST00000507355 ERCC6L2Q5T890 1561 aa24.23■■□□□ 1.47
POLR2J3-212ENST00000507355 GRIN2AQ12879 1464 aa24.17■■□□□ 1.46
POLR2J3-212ENST00000507355 ADAMTS12P58397 1594 aa24.13■■□□□ 1.45
POLR2J3-212ENST00000507355 CEP170Q5SW79 1584 aa24.13■■□□□ 1.45
POLR2J3-212ENST00000507355 NUP160Q12769 1436 aa24.08■■□□□ 1.44
POLR2J3-212ENST00000507355 WRNQ14191 1432 aaPredicted RBP eCLIP24.06■■□□□ 1.441e-6■■■■■ 58.5
POLR2J3-212ENST00000507355 SHROOM2Q13796 1616 aa24.04■■□□□ 1.44
POLR2J3-212ENST00000507355 FHAD1B1AJZ9 1412 aa24■■□□□ 1.43
POLR2J3-212ENST00000507355 KIF13AQ9H1H9 1805 aa23.99■■□□□ 1.43
POLR2J3-212ENST00000507355 BIVM-ERCC5R4GMW8 1640 aa23.97■■□□□ 1.43
POLR2J3-212ENST00000507355 TOP2BQ02880 1626 aa23.96■■□□□ 1.43
POLR2J3-212ENST00000507355 ERICH3Q5RHP9 1530 aa23.92■■□□□ 1.42
POLR2J3-212ENST00000507355 PRG4Q92954 1404 aaPredicted RBP23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms