RNA–Protein interactions for RNA: ENST00000507046.5

DDR1-259, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-259ENST00000507046 NISCHQ9Y2I1 1504 aa48.11■■■■■ 5.29
DDR1-259ENST00000507046 CCDC180Q9P1Z9 1646 aa42.81■■■■■ 4.44
DDR1-259ENST00000507046 ABCC9O60706 1549 aa41.76■■■■■ 4.28
DDR1-259ENST00000507046 RB1CC1Q8TDY2 1594 aa40.25■■■■■ 4.03
DDR1-259ENST00000507046 NACADO15069 1562 aa40.21■■■■■ 4.03
DDR1-259ENST00000507046 DCAF8L2P0C7V8 631 aa40.14■■■■■ 4.02
DDR1-259ENST00000507046 ZCCHC6Q5VYS8 1495 aaKnown RBP40.12■■■■■ 4.01
DDR1-259ENST00000507046 MYO15BQ96JP2 1530 aa39.99■■■■□ 3.99
DDR1-259ENST00000507046 DCAF1Q9Y4B6 1507 aa39.83■■■■□ 3.97
DDR1-259ENST00000507046 UNC13AQ9UPW8 1703 aa39.29■■■■□ 3.88
DDR1-259ENST00000507046 SCRIBQ14160 1630 aa39.03■■■■□ 3.84
DDR1-259ENST00000507046 PABPN1Q86U42 306 aaKnown RBP eCLIP38.98■■■■□ 3.83
DDR1-259ENST00000507046 BICRAQ9NZM4 1560 aa38.96■■■■□ 3.83
DDR1-259ENST00000507046 SHROOM4Q9ULL8 1493 aa38.66■■■■□ 3.78
DDR1-259ENST00000507046 DNAJC5BQ9UF47 199 aa38.15■■■■□ 3.7
DDR1-259ENST00000507046 EIF4G1Q04637 1599 aaKnown RBP37.97■■■■□ 3.67
DDR1-259ENST00000507046 CC2D2AQ9P2K1 1620 aa37.79■■■■□ 3.64
DDR1-259ENST00000507046 CECR2Q9BXF3 1484 aa37.53■■■■□ 3.6
DDR1-259ENST00000507046 SMARCA4P51532 1647 aa37.34■■■■□ 3.57
DDR1-259ENST00000507046 BAZ1AQ9NRL2 1556 aaPredicted RBP37.33■■■■□ 3.57
DDR1-259ENST00000507046 SMARCA2P51531 1590 aa37.11■■■■□ 3.53
DDR1-259ENST00000507046 ATAD2BQ9ULI0 1458 aa37.09■■■■□ 3.53
DDR1-259ENST00000507046 MROH2BQ7Z745 1585 aa37.06■■■■□ 3.52
DDR1-259ENST00000507046 NCAPD3P42695 1498 aa37.06■■■■□ 3.52
DDR1-259ENST00000507046 PEG3Q9GZU2 1588 aa36.97■■■■□ 3.51
DDR1-259ENST00000507046 HMGXB3Q12766 1538 aa36.94■■■■□ 3.5
DDR1-259ENST00000507046 BAZ1BQ9UIG0 1483 aaKnown RBP36.83■■■■□ 3.49
DDR1-259ENST00000507046 WIZO95785 1651 aa36.67■■■■□ 3.46
DDR1-259ENST00000507046 RSF1Q96T23 1441 aaPredicted RBP36.66■■■■□ 3.46
DDR1-259ENST00000507046 TOP2AP11388 1531 aaKnown RBP36.34■■■■□ 3.41
DDR1-259ENST00000507046 NESP48681 1621 aa36.13■■■■□ 3.37
DDR1-259ENST00000507046 LAMC3Q9Y6N6 1575 aa36.12■■■■□ 3.37
DDR1-259ENST00000507046 ERCC6Q03468 1493 aa36.05■■■■□ 3.36
DDR1-259ENST00000507046 CADPSQ9ULU8 1353 aa35.99■■■■□ 3.35
DDR1-259ENST00000507046 PDS5BQ9NTI5 1447 aa35.86■■■■□ 3.33
DDR1-259ENST00000507046 CCDC88BA6NC98 1476 aa35.86■■■■□ 3.33
DDR1-259ENST00000507046 CFTRP13569 1480 aa35.8■■■■□ 3.32
DDR1-259ENST00000507046 SUPT5HO00267 1087 aaKnown RBP35.77■■■■□ 3.32
DDR1-259ENST00000507046 KIF21AQ7Z4S6 1674 aa35.75■■■■□ 3.31
DDR1-259ENST00000507046 CUX2O14529 1486 aa35.63■■■■□ 3.29
DDR1-259ENST00000507046 THOC2Q8NI27 1593 aaKnown RBP35.63■■■■□ 3.29
DDR1-259ENST00000507046 FANCD2Q9BXW9 1451 aa35.6■■■■□ 3.29
DDR1-259ENST00000507046 PRDM2Q13029 1718 aa35.59■■■■□ 3.29
DDR1-259ENST00000507046 CEP164Q9UPV0 1460 aa35.58■■■■□ 3.29
DDR1-259ENST00000507046 MRC2Q9UBG0 1479 aa35.5■■■■□ 3.27
DDR1-259ENST00000507046 WDR62O43379 1518 aa35.38■■■■□ 3.25
DDR1-259ENST00000507046 URB2Q14146 1524 aaKnown RBP35.22■■■■□ 3.23
DDR1-259ENST00000507046 ABCC8Q09428 1581 aa35.06■■■■□ 3.2
DDR1-259ENST00000507046 TOPBP1Q92547 1522 aa35.03■■■■□ 3.2
DDR1-259ENST00000507046 DNMBPQ6XZF7 1577 aa35.02■■■■□ 3.2
DDR1-259ENST00000507046 IFT140Q96RY7 1462 aa34.82■■■■□ 3.16
DDR1-259ENST00000507046 CUX1P39880 1505 aa34.78■■■■□ 3.16
DDR1-259ENST00000507046 POLA1P09884 1462 aaPredicted RBP34.74■■■■□ 3.15
DDR1-259ENST00000507046 FGD5Q6ZNL6 1462 aa34.67■■■■□ 3.14
DDR1-259ENST00000507046 TARBP1Q13395 1621 aaKnown RBP34.63■■■■□ 3.13
DDR1-259ENST00000507046 WRNQ14191 1432 aaPredicted RBP eCLIP34.6■■■■□ 3.13
DDR1-259ENST00000507046 ZNF608Q9ULD9 1512 aaPredicted RBP34.6■■■■□ 3.13
DDR1-259ENST00000507046 SOGA1O94964 1423 aa34.58■■■■□ 3.13
DDR1-259ENST00000507046 RAD54L2Q9Y4B4 1467 aa34.56■■■■□ 3.12
DDR1-259ENST00000507046 EIF4G3O43432 1585 aaKnown RBP34.53■■■■□ 3.12
DDR1-259ENST00000507046 BIVM-ERCC5R4GMW8 1640 aa34.53■■■■□ 3.12
DDR1-259ENST00000507046 TOP2BQ02880 1626 aa34.52■■■■□ 3.12
DDR1-259ENST00000507046 SYNJ1O43426 1573 aa34.49■■■■□ 3.11
DDR1-259ENST00000507046 WDR97A6NE52 1622 aa34.44■■■■□ 3.1
DDR1-259ENST00000507046 AQRO60306 1485 aaKnown RBP eCLIP34.41■■■■□ 3.12e-7■■■■■ 31.6
DDR1-259ENST00000507046 DNAJC5Q9H3Z4 198 aa34.36■■■■□ 3.09
DDR1-259ENST00000507046 TDRD9Q8NDG6 1382 aaKnown RBP34.36■■■■□ 3.09
DDR1-259ENST00000507046 ABCA10Q8WWZ4 1543 aa34.35■■■■□ 3.09
DDR1-259ENST00000507046 ABCA5Q8WWZ7 1642 aa34.21■■■■□ 3.07
DDR1-259ENST00000507046 GRIN2BQ13224 1484 aa34.2■■■■□ 3.07
DDR1-259ENST00000507046 GAPVD1Q14C86 1478 aa34.2■■■■□ 3.07
DDR1-259ENST00000507046 PBRM1Q86U86 1689 aa34.16■■■■□ 3.06
DDR1-259ENST00000507046 SNAPC4Q5SXM2 1469 aa34.14■■■■□ 3.06
DDR1-259ENST00000507046 MAGI1Q96QZ7 1491 aaPredicted RBP34.12■■■■□ 3.05
DDR1-259ENST00000507046 OSCARQ8IYS5 282 aa34.11■■■■□ 3.05
DDR1-259ENST00000507046 CHD1O14646 1710 aa34.07■■■■□ 3.04
DDR1-259ENST00000507046 FBLN2P98095 1184 aa34.01■■■■□ 3.03
DDR1-259ENST00000507046 SYNJ2O15056 1496 aa33.97■■■■□ 3.03
DDR1-259ENST00000507046 ERICH3Q5RHP9 1530 aa33.94■■■■□ 3.02
DDR1-259ENST00000507046 CHMP7Q8WUX9 453 aaPredicted RBP33.93■■■■□ 3.02
DDR1-259ENST00000507046 ADAMTS12P58397 1594 aa33.89■■■■□ 3.02
DDR1-259ENST00000507046 KIF27Q86VH2 1401 aa33.88■■■■□ 3.01
DDR1-259ENST00000507046 FHAD1B1AJZ9 1412 aa33.82■■■■□ 3
DDR1-259ENST00000507046 TRIM41Q8WV44 630 aa33.81■■■■□ 3
DDR1-259ENST00000507046 GRIN2AQ12879 1464 aa33.76■■■■□ 3
DDR1-259ENST00000507046 CLASP1Q7Z460 1538 aa33.69■■■□□ 2.98
DDR1-259ENST00000507046 CUL7Q14999 1698 aa33.68■■■□□ 2.98
DDR1-259ENST00000507046 IGF1RP08069 1367 aa33.67■■■□□ 2.98
DDR1-259ENST00000507046 NUP160Q12769 1436 aa33.6■■■□□ 2.97
DDR1-259ENST00000507046 ARHGEF11O15085 1522 aa33.59■■■□□ 2.97
DDR1-259ENST00000507046 RIMBP3CA6NJZ7 1639 aa33.59■■■□□ 2.97
DDR1-259ENST00000507046 RIMBP3BA6NNM3 1639 aa33.59■■■□□ 2.97
DDR1-259ENST00000507046 RIMBP3Q9UFD9 1639 aa33.59■■■□□ 2.97
DDR1-259ENST00000507046 CEP170Q5SW79 1584 aa33.58■■■□□ 2.97
DDR1-259ENST00000507046 RUSC2Q8N2Y8 1516 aa33.52■■■□□ 2.96
DDR1-259ENST00000507046 CARMIL1Q5VZK9 1371 aa33.51■■■□□ 2.96
DDR1-259ENST00000507046 CHIC1Q5VXU3 224 aa33.39■■■□□ 2.94
DDR1-259ENST00000507046 SHROOM2Q13796 1616 aa33.35■■■□□ 2.93
DDR1-259ENST00000507046 RAPGEF2Q9Y4G8 1499 aa33.34■■■□□ 2.93
DDR1-259ENST00000507046 ARAP1Q96P48 1450 aa33.31■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms