RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 NISCHQ9Y2I1 1504 aa31.94■■■□□ 2.7
TCOF1-209ENST00000506630 ABCC9O60706 1549 aa28.99■■■□□ 2.23
TCOF1-209ENST00000506630 CCDC180Q9P1Z9 1646 aa28.58■■■□□ 2.17
TCOF1-209ENST00000506630 DNAJC5BQ9UF47 199 aa27.49■■□□□ 1.99
TCOF1-209ENST00000506630 RB1CC1Q8TDY2 1594 aa27.43■■□□□ 1.98
TCOF1-209ENST00000506630 NACADO15069 1562 aa27.15■■□□□ 1.94
TCOF1-209ENST00000506630 DCAF8L2P0C7V8 631 aa27.07■■□□□ 1.92
TCOF1-209ENST00000506630 PABPN1Q86U42 306 aaKnown RBP eCLIP26.97■■□□□ 1.91
TCOF1-209ENST00000506630 MYO15BQ96JP2 1530 aa26.66■■□□□ 1.86
TCOF1-209ENST00000506630 UNC13AQ9UPW8 1703 aa26.66■■□□□ 1.86
TCOF1-209ENST00000506630 BICRAQ9NZM4 1560 aa26.58■■□□□ 1.85
TCOF1-209ENST00000506630 ZCCHC6Q5VYS8 1495 aaKnown RBP26.54■■□□□ 1.84
TCOF1-209ENST00000506630 DCAF1Q9Y4B6 1507 aa26.33■■□□□ 1.81
TCOF1-209ENST00000506630 SHROOM4Q9ULL8 1493 aa26.25■■□□□ 1.79
TCOF1-209ENST00000506630 CECR2Q9BXF3 1484 aa26.16■■□□□ 1.78
TCOF1-209ENST00000506630 CC2D2AQ9P2K1 1620 aa26.12■■□□□ 1.77
TCOF1-209ENST00000506630 SCRIBQ14160 1630 aa26.09■■□□□ 1.77
TCOF1-209ENST00000506630 EIF4G1Q04637 1599 aaKnown RBP25.99■■□□□ 1.75
TCOF1-209ENST00000506630 DNAJC5Q9H3Z4 198 aa25.55■■□□□ 1.68
TCOF1-209ENST00000506630 CUX2O14529 1486 aa25.13■■□□□ 1.61
TCOF1-209ENST00000506630 NCAPD3P42695 1498 aa25.09■■□□□ 1.61
TCOF1-209ENST00000506630 ERCC6Q03468 1493 aa25.09■■□□□ 1.61
TCOF1-209ENST00000506630 ATAD2BQ9ULI0 1458 aa24.96■■□□□ 1.59
TCOF1-209ENST00000506630 SMARCA2P51531 1590 aa24.88■■□□□ 1.57
TCOF1-209ENST00000506630 SMARCA4P51532 1647 aa24.87■■□□□ 1.57
TCOF1-209ENST00000506630 HMGXB3Q12766 1538 aa24.84■■□□□ 1.57
TCOF1-209ENST00000506630 NESP48681 1621 aa24.77■■□□□ 1.56
TCOF1-209ENST00000506630 BAZ1BQ9UIG0 1483 aaKnown RBP24.71■■□□□ 1.55
TCOF1-209ENST00000506630 BAZ1AQ9NRL2 1556 aaPredicted RBP24.71■■□□□ 1.55
TCOF1-209ENST00000506630 MROH2BQ7Z745 1585 aa24.69■■□□□ 1.54
TCOF1-209ENST00000506630 PEG3Q9GZU2 1588 aa24.59■■□□□ 1.53
TCOF1-209ENST00000506630 LAMC3Q9Y6N6 1575 aa24.56■■□□□ 1.52
TCOF1-209ENST00000506630 THOC2Q8NI27 1593 aaKnown RBP24.54■■□□□ 1.52
TCOF1-209ENST00000506630 PDS5BQ9NTI5 1447 aa24.5■■□□□ 1.51
TCOF1-209ENST00000506630 WIZO95785 1651 aa24.42■■□□□ 1.5
TCOF1-209ENST00000506630 KIF21AQ7Z4S6 1674 aa24.38■■□□□ 1.49
TCOF1-209ENST00000506630 CADPSQ9ULU8 1353 aa24.34■■□□□ 1.49
TCOF1-209ENST00000506630 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
TCOF1-209ENST00000506630 MRC2Q9UBG0 1479 aa24.26■■□□□ 1.47
TCOF1-209ENST00000506630 RSF1Q96T23 1441 aaPredicted RBP24.22■■□□□ 1.47
TCOF1-209ENST00000506630 WDR62O43379 1518 aa24.17■■□□□ 1.46
TCOF1-209ENST00000506630 CEP164Q9UPV0 1460 aa24.1■■□□□ 1.45
TCOF1-209ENST00000506630 TOP2AP11388 1531 aaKnown RBP24.06■■□□□ 1.44
TCOF1-209ENST00000506630 FANCD2Q9BXW9 1451 aa24.04■■□□□ 1.44
TCOF1-209ENST00000506630 OSCARQ8IYS5 282 aa24■■□□□ 1.43
TCOF1-209ENST00000506630 CFTRP13569 1480 aa23.96■■□□□ 1.43
TCOF1-209ENST00000506630 URB2Q14146 1524 aaKnown RBP23.83■■□□□ 1.41
TCOF1-209ENST00000506630 CCDC88BA6NC98 1476 aa23.81■■□□□ 1.4
TCOF1-209ENST00000506630 PRDM2Q13029 1718 aa23.72■■□□□ 1.39
TCOF1-209ENST00000506630 IFT140Q96RY7 1462 aa23.63■■□□□ 1.37
TCOF1-209ENST00000506630 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
TCOF1-209ENST00000506630 ZNF608Q9ULD9 1512 aaPredicted RBP23.59■■□□□ 1.37
TCOF1-209ENST00000506630 RIMBP3CA6NJZ7 1639 aa23.59■■□□□ 1.37
TCOF1-209ENST00000506630 RIMBP3BA6NNM3 1639 aa23.59■■□□□ 1.37
TCOF1-209ENST00000506630 RIMBP3Q9UFD9 1639 aa23.59■■□□□ 1.37
TCOF1-209ENST00000506630 ARHGEF11O15085 1522 aa23.53■■□□□ 1.36
TCOF1-209ENST00000506630 TOPBP1Q92547 1522 aa23.52■■□□□ 1.36
TCOF1-209ENST00000506630 ABCC8Q09428 1581 aa23.5■■□□□ 1.35
TCOF1-209ENST00000506630 CYB5RLQ6IPT4 315 aa23.46■■□□□ 1.35
TCOF1-209ENST00000506630 CHIC1Q5VXU3 224 aa23.43■■□□□ 1.34
TCOF1-209ENST00000506630 EIF4G3O43432 1585 aaKnown RBP23.42■■□□□ 1.34
TCOF1-209ENST00000506630 DNMBPQ6XZF7 1577 aa23.4■■□□□ 1.34
TCOF1-209ENST00000506630 AEBP2Q6ZN18 517 aaPredicted RBP23.38■■□□□ 1.33
TCOF1-209ENST00000506630 AQRO60306 1485 aaKnown RBP eCLIP23.37■■□□□ 1.332e-8■■■■■ 39.5
TCOF1-209ENST00000506630 FBLN2P98095 1184 aa23.37■■□□□ 1.33
TCOF1-209ENST00000506630 TRHP20396 242 aaPredicted RBP23.35■■□□□ 1.33
TCOF1-209ENST00000506630 TARBP1Q13395 1621 aaKnown RBP23.3■■□□□ 1.32
TCOF1-209ENST00000506630 CHD1O14646 1710 aa23.28■■□□□ 1.32
TCOF1-209ENST00000506630 POLA1P09884 1462 aaPredicted RBP23.26■■□□□ 1.31
TCOF1-209ENST00000506630 ARAP1Q96P48 1450 aa23.26■■□□□ 1.31
TCOF1-209ENST00000506630 RAD54L2Q9Y4B4 1467 aa23.21■■□□□ 1.31
TCOF1-209ENST00000506630 SOGA1O94964 1423 aa23.2■■□□□ 1.3
TCOF1-209ENST00000506630 TDRD9Q8NDG6 1382 aaKnown RBP23.2■■□□□ 1.3
TCOF1-209ENST00000506630 CUX1P39880 1505 aa23.16■■□□□ 1.3
TCOF1-209ENST00000506630 CHMP7Q8WUX9 453 aaPredicted RBP23.14■■□□□ 1.29
TCOF1-209ENST00000506630 FGD5Q6ZNL6 1462 aa23.11■■□□□ 1.29
TCOF1-209ENST00000506630 SNAPC4Q5SXM2 1469 aa23.11■■□□□ 1.29
TCOF1-209ENST00000506630 WDR97A6NE52 1622 aa23.07■■□□□ 1.28
TCOF1-209ENST00000506630 SYNJ1O43426 1573 aa23.05■■□□□ 1.28
TCOF1-209ENST00000506630 MAGI1Q96QZ7 1491 aaPredicted RBP23.05■■□□□ 1.28
TCOF1-209ENST00000506630 CLASP1Q7Z460 1538 aa23.03■■□□□ 1.28
TCOF1-209ENST00000506630 GRIN2BQ13224 1484 aa23.03■■□□□ 1.28
TCOF1-209ENST00000506630 SYNJ2O15056 1496 aa22.98■■□□□ 1.27
TCOF1-209ENST00000506630 BIVM-ERCC5R4GMW8 1640 aa22.9■■□□□ 1.26
TCOF1-209ENST00000506630 GAPVD1Q14C86 1478 aa22.89■■□□□ 1.25
TCOF1-209ENST00000506630 TOP2BQ02880 1626 aa22.87■■□□□ 1.25
TCOF1-209ENST00000506630 WRNQ14191 1432 aaPredicted RBP eCLIP22.87■■□□□ 1.25
TCOF1-209ENST00000506630 PBRM1Q86U86 1689 aa22.82■■□□□ 1.24
TCOF1-209ENST00000506630 ABCA10Q8WWZ4 1543 aa22.82■■□□□ 1.24
TCOF1-209ENST00000506630 ABCA5Q8WWZ7 1642 aa22.8■■□□□ 1.24
TCOF1-209ENST00000506630 GRIN2AQ12879 1464 aa22.71■■□□□ 1.23
TCOF1-209ENST00000506630 ERCC6L2Q5T890 1561 aa22.64■■□□□ 1.22
TCOF1-209ENST00000506630 NUP160Q12769 1436 aa22.64■■□□□ 1.21
TCOF1-209ENST00000506630 CEP170Q5SW79 1584 aa22.62■■□□□ 1.21
TCOF1-209ENST00000506630 ADAMTS12P58397 1594 aa22.6■■□□□ 1.21
TCOF1-209ENST00000506630 FHAD1B1AJZ9 1412 aa22.6■■□□□ 1.21
TCOF1-209ENST00000506630 SHROOM2Q13796 1616 aa22.53■■□□□ 1.2
TCOF1-209ENST00000506630 ERICH3Q5RHP9 1530 aa22.5■■□□□ 1.19
TCOF1-209ENST00000506630 PRG4Q92954 1404 aaPredicted RBP22.49■■□□□ 1.19
TCOF1-209ENST00000506630 JPH4Q96JJ6 628 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms