RNA–Protein interactions for RNA: ENST00000506537.1

PDLIM7-216, Transcript of PDZ and LIM domain 7, humanhuman

TSL 2

Gene PDLIM7, Length 636 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-216ENST00000506537 NISCHQ9Y2I1 1504 aa44.44■■■■■ 4.7
PDLIM7-216ENST00000506537 CCDC180Q9P1Z9 1646 aa39.49■■■■□ 3.91
PDLIM7-216ENST00000506537 ABCC9O60706 1549 aa38.57■■■■□ 3.76
PDLIM7-216ENST00000506537 RB1CC1Q8TDY2 1594 aa37.1■■■■□ 3.53
PDLIM7-216ENST00000506537 NACADO15069 1562 aa37.08■■■■□ 3.53
PDLIM7-216ENST00000506537 ZCCHC6Q5VYS8 1495 aaKnown RBP37.06■■■■□ 3.52
PDLIM7-216ENST00000506537 DCAF8L2P0C7V8 631 aa36.98■■■■□ 3.51
PDLIM7-216ENST00000506537 MYO15BQ96JP2 1530 aa36.89■■■■□ 3.5
PDLIM7-216ENST00000506537 DCAF1Q9Y4B6 1507 aa36.76■■■■□ 3.48
PDLIM7-216ENST00000506537 UNC13AQ9UPW8 1703 aa36.35■■■■□ 3.41
PDLIM7-216ENST00000506537 BICRAQ9NZM4 1560 aa36.06■■■■□ 3.36
PDLIM7-216ENST00000506537 SCRIBQ14160 1630 aa36.06■■■■□ 3.36
PDLIM7-216ENST00000506537 PABPN1Q86U42 306 aaKnown RBP eCLIP36.02■■■■□ 3.36
PDLIM7-216ENST00000506537 SHROOM4Q9ULL8 1493 aa35.6■■■■□ 3.29
PDLIM7-216ENST00000506537 DNAJC5BQ9UF47 199 aa35.6■■■■□ 3.29
PDLIM7-216ENST00000506537 EIF4G1Q04637 1599 aaKnown RBP35.06■■■■□ 3.2
PDLIM7-216ENST00000506537 CC2D2AQ9P2K1 1620 aa34.9■■■■□ 3.18
PDLIM7-216ENST00000506537 CECR2Q9BXF3 1484 aa34.64■■■■□ 3.14
PDLIM7-216ENST00000506537 SMARCA4P51532 1647 aa34.49■■■■□ 3.11
PDLIM7-216ENST00000506537 BAZ1AQ9NRL2 1556 aaPredicted RBP34.41■■■■□ 3.1
PDLIM7-216ENST00000506537 MROH2BQ7Z745 1585 aa34.28■■■■□ 3.08
PDLIM7-216ENST00000506537 ATAD2BQ9ULI0 1458 aa34.27■■■■□ 3.08
PDLIM7-216ENST00000506537 NCAPD3P42695 1498 aa34.21■■■■□ 3.07
PDLIM7-216ENST00000506537 SMARCA2P51531 1590 aa34.2■■■■□ 3.07
PDLIM7-216ENST00000506537 PEG3Q9GZU2 1588 aa34.15■■■■□ 3.06
PDLIM7-216ENST00000506537 HMGXB3Q12766 1538 aa34.08■■■■□ 3.05
PDLIM7-216ENST00000506537 BAZ1BQ9UIG0 1483 aaKnown RBP33.97■■■■□ 3.03
PDLIM7-216ENST00000506537 WIZO95785 1651 aa33.91■■■■□ 3.02
PDLIM7-216ENST00000506537 RSF1Q96T23 1441 aaPredicted RBP33.88■■■■□ 3.01
PDLIM7-216ENST00000506537 TOP2AP11388 1531 aaKnown RBP33.54■■■□□ 2.96
PDLIM7-216ENST00000506537 NESP48681 1621 aa33.42■■■□□ 2.94
PDLIM7-216ENST00000506537 LAMC3Q9Y6N6 1575 aa33.3■■■□□ 2.92
PDLIM7-216ENST00000506537 DNAJC5Q9H3Z4 198 aa33.24■■■□□ 2.91
PDLIM7-216ENST00000506537 CADPSQ9ULU8 1353 aa33.2■■■□□ 2.9
PDLIM7-216ENST00000506537 ERCC6Q03468 1493 aa33.19■■■□□ 2.9
PDLIM7-216ENST00000506537 CCDC88BA6NC98 1476 aa33.13■■■□□ 2.89
PDLIM7-216ENST00000506537 CFTRP13569 1480 aa33.05■■■□□ 2.88
PDLIM7-216ENST00000506537 KIF21AQ7Z4S6 1674 aa33.04■■■□□ 2.88
PDLIM7-216ENST00000506537 PDS5BQ9NTI5 1447 aa33.03■■■□□ 2.88
PDLIM7-216ENST00000506537 SUPT5HO00267 1087 aaKnown RBP32.99■■■□□ 2.87
PDLIM7-216ENST00000506537 THOC2Q8NI27 1593 aaKnown RBP32.93■■■□□ 2.86
PDLIM7-216ENST00000506537 FANCD2Q9BXW9 1451 aa32.85■■■□□ 2.85
PDLIM7-216ENST00000506537 PRDM2Q13029 1718 aa32.84■■■□□ 2.85
PDLIM7-216ENST00000506537 CUX2O14529 1486 aa32.84■■■□□ 2.85
PDLIM7-216ENST00000506537 CEP164Q9UPV0 1460 aa32.8■■■□□ 2.84
PDLIM7-216ENST00000506537 MRC2Q9UBG0 1479 aa32.74■■■□□ 2.83
PDLIM7-216ENST00000506537 WDR62O43379 1518 aa32.67■■■□□ 2.82
PDLIM7-216ENST00000506537 URB2Q14146 1524 aaKnown RBP32.56■■■□□ 2.8
PDLIM7-216ENST00000506537 TOPBP1Q92547 1522 aa32.35■■■□□ 2.77
PDLIM7-216ENST00000506537 DNMBPQ6XZF7 1577 aa32.32■■■□□ 2.76
PDLIM7-216ENST00000506537 ABCC8Q09428 1581 aa32.27■■■□□ 2.76
PDLIM7-216ENST00000506537 CUX1P39880 1505 aa32.16■■■□□ 2.74
PDLIM7-216ENST00000506537 IFT140Q96RY7 1462 aa32.1■■■□□ 2.73
PDLIM7-216ENST00000506537 POLA1P09884 1462 aaPredicted RBP32.08■■■□□ 2.73
PDLIM7-216ENST00000506537 TARBP1Q13395 1621 aaKnown RBP32.02■■■□□ 2.72
PDLIM7-216ENST00000506537 FGD5Q6ZNL6 1462 aa32.01■■■□□ 2.71
PDLIM7-216ENST00000506537 ZNF608Q9ULD9 1512 aaPredicted RBP32■■■□□ 2.71
PDLIM7-216ENST00000506537 RAD54L2Q9Y4B4 1467 aa31.95■■■□□ 2.7
PDLIM7-216ENST00000506537 WRNQ14191 1432 aaPredicted RBP eCLIP31.92■■■□□ 2.7
PDLIM7-216ENST00000506537 SYNJ1O43426 1573 aa31.9■■■□□ 2.7
PDLIM7-216ENST00000506537 SOGA1O94964 1423 aa31.9■■■□□ 2.7
PDLIM7-216ENST00000506537 EIF4G3O43432 1585 aaKnown RBP31.89■■■□□ 2.7
PDLIM7-216ENST00000506537 BIVM-ERCC5R4GMW8 1640 aa31.89■■■□□ 2.7
PDLIM7-216ENST00000506537 TOP2BQ02880 1626 aa31.87■■■□□ 2.69
PDLIM7-216ENST00000506537 WDR97A6NE52 1622 aa31.8■■■□□ 2.68
PDLIM7-216ENST00000506537 AQRO60306 1485 aaKnown RBP eCLIP31.79■■■□□ 2.682e-9■■■■□ 22.2
PDLIM7-216ENST00000506537 TDRD9Q8NDG6 1382 aaKnown RBP31.73■■■□□ 2.67
PDLIM7-216ENST00000506537 ABCA10Q8WWZ4 1543 aa31.7■■■□□ 2.66
PDLIM7-216ENST00000506537 ABCA5Q8WWZ7 1642 aa31.6■■■□□ 2.65
PDLIM7-216ENST00000506537 GAPVD1Q14C86 1478 aa31.55■■■□□ 2.64
PDLIM7-216ENST00000506537 PBRM1Q86U86 1689 aa31.54■■■□□ 2.64
PDLIM7-216ENST00000506537 GRIN2BQ13224 1484 aa31.53■■■□□ 2.64
PDLIM7-216ENST00000506537 SNAPC4Q5SXM2 1469 aa31.52■■■□□ 2.64
PDLIM7-216ENST00000506537 TRIM41Q8WV44 630 aa31.51■■■□□ 2.63
PDLIM7-216ENST00000506537 CHD1O14646 1710 aa31.47■■■□□ 2.63
PDLIM7-216ENST00000506537 MAGI1Q96QZ7 1491 aaPredicted RBP31.45■■■□□ 2.62
PDLIM7-216ENST00000506537 OSCARQ8IYS5 282 aa31.42■■■□□ 2.62
PDLIM7-216ENST00000506537 SYNJ2O15056 1496 aa31.33■■■□□ 2.61
PDLIM7-216ENST00000506537 FBLN2P98095 1184 aa31.31■■■□□ 2.6
PDLIM7-216ENST00000506537 ERICH3Q5RHP9 1530 aa31.3■■■□□ 2.6
PDLIM7-216ENST00000506537 ADAMTS12P58397 1594 aa31.3■■■□□ 2.6
PDLIM7-216ENST00000506537 CHMP7Q8WUX9 453 aaPredicted RBP31.24■■■□□ 2.59
PDLIM7-216ENST00000506537 KIF27Q86VH2 1401 aa31.22■■■□□ 2.59
PDLIM7-216ENST00000506537 FHAD1B1AJZ9 1412 aa31.18■■■□□ 2.58
PDLIM7-216ENST00000506537 GRIN2AQ12879 1464 aa31.15■■■□□ 2.58
PDLIM7-216ENST00000506537 CLASP1Q7Z460 1538 aa31.14■■■□□ 2.57
PDLIM7-216ENST00000506537 IGF1RP08069 1367 aa31.1■■■□□ 2.57
PDLIM7-216ENST00000506537 CUL7Q14999 1698 aa31.04■■■□□ 2.56
PDLIM7-216ENST00000506537 CEP170Q5SW79 1584 aa31.04■■■□□ 2.56
PDLIM7-216ENST00000506537 RUSC2Q8N2Y8 1516 aa31.03■■■□□ 2.56
PDLIM7-216ENST00000506537 RIMBP3CA6NJZ7 1639 aa31.02■■■□□ 2.56
PDLIM7-216ENST00000506537 RIMBP3BA6NNM3 1639 aa31.02■■■□□ 2.56
PDLIM7-216ENST00000506537 RIMBP3Q9UFD9 1639 aa31.02■■■□□ 2.56
PDLIM7-216ENST00000506537 NUP160Q12769 1436 aa31.02■■■□□ 2.56
PDLIM7-216ENST00000506537 ARHGEF11O15085 1522 aa31.01■■■□□ 2.55
PDLIM7-216ENST00000506537 CARMIL1Q5VZK9 1371 aa30.91■■■□□ 2.54
PDLIM7-216ENST00000506537 CHIC1Q5VXU3 224 aa30.86■■■□□ 2.53
PDLIM7-216ENST00000506537 SHROOM2Q13796 1616 aa30.8■■■□□ 2.52
PDLIM7-216ENST00000506537 ARAP1Q96P48 1450 aa30.79■■■□□ 2.52
PDLIM7-216ENST00000506537 RAPGEF2Q9Y4G8 1499 aa30.74■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms