RNA–Protein interactions for RNA: ENST00000506104.1

SNF8-204, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 3

Gene SNF8, Length 455 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-204ENST00000506104 NISCHQ9Y2I1 1504 aa20.59■□□□□ 0.89
SNF8-204ENST00000506104 ABCC9O60706 1549 aa18.8■□□□□ 0.6
SNF8-204ENST00000506104 CCDC180Q9P1Z9 1646 aa18.55■□□□□ 0.56
SNF8-204ENST00000506104 RB1CC1Q8TDY2 1594 aa17.77■□□□□ 0.44
SNF8-204ENST00000506104 DCAF8L2P0C7V8 631 aa17.74■□□□□ 0.43
SNF8-204ENST00000506104 DNAJC5BQ9UF47 199 aa17.67■□□□□ 0.42
SNF8-204ENST00000506104 NACADO15069 1562 aa17.55■□□□□ 0.4
SNF8-204ENST00000506104 PABPN1Q86U42 306 aaKnown RBP eCLIP17.51■□□□□ 0.39
SNF8-204ENST00000506104 UNC13AQ9UPW8 1703 aa17.42■□□□□ 0.38
SNF8-204ENST00000506104 BICRAQ9NZM4 1560 aa17.19■□□□□ 0.34
SNF8-204ENST00000506104 MYO15BQ96JP2 1530 aa17.13■□□□□ 0.33
SNF8-204ENST00000506104 SCRIBQ14160 1630 aa17.03■□□□□ 0.32
SNF8-204ENST00000506104 ZCCHC6Q5VYS8 1495 aaKnown RBP17.01■□□□□ 0.31
SNF8-204ENST00000506104 CC2D2AQ9P2K1 1620 aa16.93■□□□□ 0.3
SNF8-204ENST00000506104 CECR2Q9BXF3 1484 aa16.9■□□□□ 0.3
SNF8-204ENST00000506104 DCAF1Q9Y4B6 1507 aa16.9■□□□□ 0.3
SNF8-204ENST00000506104 SHROOM4Q9ULL8 1493 aa16.84■□□□□ 0.29
SNF8-204ENST00000506104 EIF4G1Q04637 1599 aaKnown RBP16.82■□□□□ 0.28
SNF8-204ENST00000506104 DNAJC5Q9H3Z4 198 aa16.31■□□□□ 0.2
SNF8-204ENST00000506104 ERCC6Q03468 1493 aa16.28■□□□□ 0.2
SNF8-204ENST00000506104 NCAPD3P42695 1498 aa16.16■□□□□ 0.18
SNF8-204ENST00000506104 ATAD2BQ9ULI0 1458 aa16.15■□□□□ 0.18
SNF8-204ENST00000506104 SMARCA4P51532 1647 aa16.14■□□□□ 0.17
SNF8-204ENST00000506104 CUX2O14529 1486 aa16.14■□□□□ 0.17
SNF8-204ENST00000506104 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
SNF8-204ENST00000506104 NESP48681 1621 aa16.08■□□□□ 0.17
SNF8-204ENST00000506104 HMGXB3Q12766 1538 aa16.05■□□□□ 0.16
SNF8-204ENST00000506104 BAZ1BQ9UIG0 1483 aaKnown RBP16.05■□□□□ 0.16
SNF8-204ENST00000506104 BAZ1AQ9NRL2 1556 aaPredicted RBP16.02■□□□□ 0.16
SNF8-204ENST00000506104 KIF21AQ7Z4S6 1674 aa15.91■□□□□ 0.14
SNF8-204ENST00000506104 MROH2BQ7Z745 1585 aa15.91■□□□□ 0.14
SNF8-204ENST00000506104 THOC2Q8NI27 1593 aaKnown RBP15.89■□□□□ 0.13
SNF8-204ENST00000506104 LAMC3Q9Y6N6 1575 aa15.88■□□□□ 0.13
SNF8-204ENST00000506104 PEG3Q9GZU2 1588 aa15.86■□□□□ 0.13
SNF8-204ENST00000506104 PDS5BQ9NTI5 1447 aa15.82■□□□□ 0.12
SNF8-204ENST00000506104 WIZO95785 1651 aa15.78■□□□□ 0.12
SNF8-204ENST00000506104 TRIM41Q8WV44 630 aa15.76■□□□□ 0.11
SNF8-204ENST00000506104 CADPSQ9ULU8 1353 aa15.72■□□□□ 0.11
SNF8-204ENST00000506104 MRC2Q9UBG0 1479 aa15.7■□□□□ 0.1
SNF8-204ENST00000506104 CEP164Q9UPV0 1460 aa15.63■□□□□ 0.09
SNF8-204ENST00000506104 WDR62O43379 1518 aa15.61■□□□□ 0.09
SNF8-204ENST00000506104 FANCD2Q9BXW9 1451 aa15.59■□□□□ 0.09
SNF8-204ENST00000506104 RSF1Q96T23 1441 aaPredicted RBP15.5■□□□□ 0.07
SNF8-204ENST00000506104 TOP2AP11388 1531 aaKnown RBP15.49■□□□□ 0.07
SNF8-204ENST00000506104 CFTRP13569 1480 aa15.47■□□□□ 0.07
SNF8-204ENST00000506104 OSCARQ8IYS5 282 aa15.47■□□□□ 0.07
SNF8-204ENST00000506104 URB2Q14146 1524 aaKnown RBP15.44■□□□□ 0.06
SNF8-204ENST00000506104 PRDM2Q13029 1718 aa15.44■□□□□ 0.06
SNF8-204ENST00000506104 CHIC1Q5VXU3 224 aa15.38■□□□□ 0.05
SNF8-204ENST00000506104 CCDC88BA6NC98 1476 aa15.33■□□□□ 0.05
SNF8-204ENST00000506104 ZNF608Q9ULD9 1512 aaPredicted RBP15.31■□□□□ 0.04
SNF8-204ENST00000506104 RIMBP3CA6NJZ7 1639 aa15.29■□□□□ 0.04
SNF8-204ENST00000506104 RIMBP3BA6NNM3 1639 aa15.29■□□□□ 0.04
SNF8-204ENST00000506104 RIMBP3Q9UFD9 1639 aa15.29■□□□□ 0.04
SNF8-204ENST00000506104 IFT140Q96RY7 1462 aa15.28■□□□□ 0.04
SNF8-204ENST00000506104 AEBP2Q6ZN18 517 aaPredicted RBP15.28■□□□□ 0.04
SNF8-204ENST00000506104 TOPBP1Q92547 1522 aa15.27■□□□□ 0.03
SNF8-204ENST00000506104 FBLN2P98095 1184 aa15.25■□□□□ 0.03
SNF8-204ENST00000506104 EIF4G3O43432 1585 aaKnown RBP15.23■□□□□ 0.03
SNF8-204ENST00000506104 CHD1O14646 1710 aa15.21■□□□□ 0.03
SNF8-204ENST00000506104 DNMBPQ6XZF7 1577 aa15.2■□□□□ 0.02
SNF8-204ENST00000506104 ABCC8Q09428 1581 aa15.19■□□□□ 0.02
SNF8-204ENST00000506104 ARHGEF11O15085 1522 aa15.19■□□□□ 0.02
SNF8-204ENST00000506104 CYB5RLQ6IPT4 315 aa15.18■□□□□ 0.02
SNF8-204ENST00000506104 AQRO60306 1485 aaKnown RBP eCLIP15.17■□□□□ 0.023e-6■■■□□ 17.8
SNF8-204ENST00000506104 TRHP20396 242 aaPredicted RBP15.15■□□□□ 0.02
SNF8-204ENST00000506104 TARBP1Q13395 1621 aaKnown RBP15.11■□□□□ 0.01
SNF8-204ENST00000506104 RAD54L2Q9Y4B4 1467 aa15.1■□□□□ 0.01
SNF8-204ENST00000506104 POLA1P09884 1462 aaPredicted RBP15.08■□□□□ 0.01
SNF8-204ENST00000506104 TDRD9Q8NDG6 1382 aaKnown RBP15.08■□□□□ 0
SNF8-204ENST00000506104 SOGA1O94964 1423 aa15.06■□□□□ 0
SNF8-204ENST00000506104 CHMP7Q8WUX9 453 aaPredicted RBP15.02■□□□□ -0
SNF8-204ENST00000506104 SNAPC4Q5SXM2 1469 aa15.01□□□□□ -0.01
SNF8-204ENST00000506104 FGD5Q6ZNL6 1462 aa15.01□□□□□ -0.01
SNF8-204ENST00000506104 ARAP1Q96P48 1450 aa15.01□□□□□ -0.01
SNF8-204ENST00000506104 CUX1P39880 1505 aa14.96□□□□□ -0.02
SNF8-204ENST00000506104 SYNJ1O43426 1573 aa14.95□□□□□ -0.02
SNF8-204ENST00000506104 SUPT5HO00267 1087 aaKnown RBP14.94□□□□□ -0.02
SNF8-204ENST00000506104 PBRM1Q86U86 1689 aa14.93□□□□□ -0.02
SNF8-204ENST00000506104 GRIN2BQ13224 1484 aa14.91□□□□□ -0.02
SNF8-204ENST00000506104 MAGI1Q96QZ7 1491 aaPredicted RBP14.9□□□□□ -0.02
SNF8-204ENST00000506104 WDR97A6NE52 1622 aa14.9□□□□□ -0.02
SNF8-204ENST00000506104 CLASP1Q7Z460 1538 aa14.89□□□□□ -0.03
SNF8-204ENST00000506104 SYNJ2O15056 1496 aa14.87□□□□□ -0.03
SNF8-204ENST00000506104 GAPVD1Q14C86 1478 aa14.87□□□□□ -0.03
SNF8-204ENST00000506104 ABCA5Q8WWZ7 1642 aa14.78□□□□□ -0.04
SNF8-204ENST00000506104 ABCA10Q8WWZ4 1543 aa14.77□□□□□ -0.04
SNF8-204ENST00000506104 WRNQ14191 1432 aaPredicted RBP eCLIP14.73□□□□□ -0.05
SNF8-204ENST00000506104 ERCC6L2Q5T890 1561 aa14.73□□□□□ -0.05
SNF8-204ENST00000506104 GRIN2AQ12879 1464 aa14.72□□□□□ -0.05
SNF8-204ENST00000506104 ADAMTS12P58397 1594 aa14.71□□□□□ -0.05
SNF8-204ENST00000506104 CEP170Q5SW79 1584 aa14.69□□□□□ -0.06
SNF8-204ENST00000506104 BIVM-ERCC5R4GMW8 1640 aa14.68□□□□□ -0.06
SNF8-204ENST00000506104 TOP2BQ02880 1626 aa14.66□□□□□ -0.06
SNF8-204ENST00000506104 FHAD1B1AJZ9 1412 aa14.64□□□□□ -0.07
SNF8-204ENST00000506104 NUP160Q12769 1436 aa14.62□□□□□ -0.07
SNF8-204ENST00000506104 PRG4Q92954 1404 aaPredicted RBP14.59□□□□□ -0.07
SNF8-204ENST00000506104 ERICH3Q5RHP9 1530 aa14.59□□□□□ -0.07
SNF8-204ENST00000506104 SHROOM2Q13796 1616 aa14.59□□□□□ -0.07
SNF8-204ENST00000506104 KIF13AQ9H1H9 1805 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms