RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 NISCHQ9Y2I1 1504 aa52.47■■■■■ 5.99
SQSTM1-210ENST00000506042 CCDC180Q9P1Z9 1646 aa47.3■■■■■ 5.16
SQSTM1-210ENST00000506042 ABCC9O60706 1549 aa47.2■■■■■ 5.15
SQSTM1-210ENST00000506042 RB1CC1Q8TDY2 1594 aa45.09■■■■■ 4.81
SQSTM1-210ENST00000506042 NACADO15069 1562 aa44.73■■■■■ 4.75
SQSTM1-210ENST00000506042 DCAF8L2P0C7V8 631 aa44.41■■■■■ 4.7
SQSTM1-210ENST00000506042 DNAJC5BQ9UF47 199 aa44.1■■■■■ 4.65
SQSTM1-210ENST00000506042 MYO15BQ96JP2 1530 aa44.08■■■■■ 4.65
SQSTM1-210ENST00000506042 PABPN1Q86U42 306 aaKnown RBP eCLIP43.85■■■■■ 4.61
SQSTM1-210ENST00000506042 UNC13AQ9UPW8 1703 aa43.84■■■■■ 4.61
SQSTM1-210ENST00000506042 BICRAQ9NZM4 1560 aa43.48■■■■■ 4.55
SQSTM1-210ENST00000506042 ZCCHC6Q5VYS8 1495 aaKnown RBP43.45■■■■■ 4.55
SQSTM1-210ENST00000506042 DCAF1Q9Y4B6 1507 aa43.43■■■■■ 4.54
SQSTM1-210ENST00000506042 SHROOM4Q9ULL8 1493 aa43.27■■■■■ 4.52
SQSTM1-210ENST00000506042 SCRIBQ14160 1630 aa42.93■■■■■ 4.46
SQSTM1-210ENST00000506042 CC2D2AQ9P2K1 1620 aa42.67■■■■■ 4.42
SQSTM1-210ENST00000506042 CECR2Q9BXF3 1484 aa42.61■■■■■ 4.41
SQSTM1-210ENST00000506042 EIF4G1Q04637 1599 aaKnown RBP42.56■■■■■ 4.4
SQSTM1-210ENST00000506042 NCAPD3P42695 1498 aa41.19■■■■■ 4.18
SQSTM1-210ENST00000506042 SMARCA2P51531 1590 aa41.07■■■■■ 4.16
SQSTM1-210ENST00000506042 ATAD2BQ9ULI0 1458 aa41■■■■■ 4.15
SQSTM1-210ENST00000506042 SMARCA4P51532 1647 aa40.98■■■■■ 4.15
SQSTM1-210ENST00000506042 ERCC6Q03468 1493 aa40.97■■■■■ 4.15
SQSTM1-210ENST00000506042 HMGXB3Q12766 1538 aa40.95■■■■■ 4.15
SQSTM1-210ENST00000506042 CUX2O14529 1486 aa40.9■■■■■ 4.14
SQSTM1-210ENST00000506042 BAZ1AQ9NRL2 1556 aaPredicted RBP40.86■■■■■ 4.13
SQSTM1-210ENST00000506042 DNAJC5Q9H3Z4 198 aa40.85■■■■■ 4.13
SQSTM1-210ENST00000506042 BAZ1BQ9UIG0 1483 aaKnown RBP40.72■■■■■ 4.11
SQSTM1-210ENST00000506042 PEG3Q9GZU2 1588 aa40.6■■■■■ 4.09
SQSTM1-210ENST00000506042 NESP48681 1621 aa40.41■■■■■ 4.06
SQSTM1-210ENST00000506042 LAMC3Q9Y6N6 1575 aa40.4■■■■■ 4.06
SQSTM1-210ENST00000506042 MROH2BQ7Z745 1585 aa40.32■■■■■ 4.05
SQSTM1-210ENST00000506042 PDS5BQ9NTI5 1447 aa40.2■■■■■ 4.03
SQSTM1-210ENST00000506042 THOC2Q8NI27 1593 aaKnown RBP40.14■■■■■ 4.02
SQSTM1-210ENST00000506042 KIF21AQ7Z4S6 1674 aa40.02■■■■■ 4
SQSTM1-210ENST00000506042 CADPSQ9ULU8 1353 aa39.95■■■■□ 3.99
SQSTM1-210ENST00000506042 WIZO95785 1651 aa39.86■■■■□ 3.97
SQSTM1-210ENST00000506042 MRC2Q9UBG0 1479 aa39.77■■■■□ 3.96
SQSTM1-210ENST00000506042 CEP164Q9UPV0 1460 aa39.63■■■■□ 3.94
SQSTM1-210ENST00000506042 WDR62O43379 1518 aa39.63■■■■□ 3.93
SQSTM1-210ENST00000506042 FANCD2Q9BXW9 1451 aa39.5■■■■□ 3.91
SQSTM1-210ENST00000506042 RSF1Q96T23 1441 aaPredicted RBP39.48■■■■□ 3.91
SQSTM1-210ENST00000506042 TOP2AP11388 1531 aaKnown RBP39.48■■■■□ 3.91
SQSTM1-210ENST00000506042 CFTRP13569 1480 aa39.44■■■■□ 3.9
SQSTM1-210ENST00000506042 PRDM2Q13029 1718 aa39.17■■■■□ 3.86
SQSTM1-210ENST00000506042 URB2Q14146 1524 aaKnown RBP39.07■■■■□ 3.84
SQSTM1-210ENST00000506042 TRIM41Q8WV44 630 aa39.06■■■■□ 3.84
SQSTM1-210ENST00000506042 OSCARQ8IYS5 282 aa39.01■■■■□ 3.84
SQSTM1-210ENST00000506042 CCDC88BA6NC98 1476 aa38.93■■■■□ 3.82
SQSTM1-210ENST00000506042 ABCC8Q09428 1581 aa38.85■■■■□ 3.81
SQSTM1-210ENST00000506042 IFT140Q96RY7 1462 aa38.84■■■■□ 3.81
SQSTM1-210ENST00000506042 TOPBP1Q92547 1522 aa38.7■■■■□ 3.79
SQSTM1-210ENST00000506042 DNMBPQ6XZF7 1577 aa38.63■■■■□ 3.77
SQSTM1-210ENST00000506042 ZNF608Q9ULD9 1512 aaPredicted RBP38.56■■■■□ 3.76
SQSTM1-210ENST00000506042 EIF4G3O43432 1585 aaKnown RBP38.49■■■■□ 3.75
SQSTM1-210ENST00000506042 RIMBP3CA6NJZ7 1639 aa38.39■■■■□ 3.74
SQSTM1-210ENST00000506042 RIMBP3BA6NNM3 1639 aa38.39■■■■□ 3.74
SQSTM1-210ENST00000506042 RIMBP3Q9UFD9 1639 aa38.39■■■■□ 3.74
SQSTM1-210ENST00000506042 TARBP1Q13395 1621 aaKnown RBP38.33■■■■□ 3.73
SQSTM1-210ENST00000506042 POLA1P09884 1462 aaPredicted RBP38.28■■■■□ 3.72
SQSTM1-210ENST00000506042 ARHGEF11O15085 1522 aa38.28■■■■□ 3.72
SQSTM1-210ENST00000506042 AQRO60306 1485 aaKnown RBP eCLIP38.25■■■■□ 3.71
SQSTM1-210ENST00000506042 CHD1O14646 1710 aa38.21■■■■□ 3.71
SQSTM1-210ENST00000506042 WDR97A6NE52 1622 aa38.2■■■■□ 3.7
SQSTM1-210ENST00000506042 FBLN2P98095 1184 aa38.19■■■■□ 3.7
SQSTM1-210ENST00000506042 SOGA1O94964 1423 aa38.18■■■■□ 3.7
SQSTM1-210ENST00000506042 RAD54L2Q9Y4B4 1467 aa38.06■■■■□ 3.68
SQSTM1-210ENST00000506042 FGD5Q6ZNL6 1462 aa38.05■■■■□ 3.68
SQSTM1-210ENST00000506042 TDRD9Q8NDG6 1382 aaKnown RBP38.02■■■■□ 3.68
SQSTM1-210ENST00000506042 CYB5RLQ6IPT4 315 aa38.01■■■■□ 3.68
SQSTM1-210ENST00000506042 MAGI1Q96QZ7 1491 aaPredicted RBP37.95■■■■□ 3.67
SQSTM1-210ENST00000506042 CHMP7Q8WUX9 453 aaPredicted RBP37.94■■■■□ 3.66
SQSTM1-210ENST00000506042 SNAPC4Q5SXM2 1469 aa37.93■■■■□ 3.66
SQSTM1-210ENST00000506042 CUX1P39880 1505 aa37.92■■■■□ 3.66
SQSTM1-210ENST00000506042 GRIN2BQ13224 1484 aa37.91■■■■□ 3.66
SQSTM1-210ENST00000506042 SYNJ1O43426 1573 aa37.9■■■■□ 3.66
SQSTM1-210ENST00000506042 ARAP1Q96P48 1450 aa37.82■■■■□ 3.64
SQSTM1-210ENST00000506042 SYNJ2O15056 1496 aa37.78■■■■□ 3.64
SQSTM1-210ENST00000506042 TRHP20396 242 aaPredicted RBP37.76■■■■□ 3.64
SQSTM1-210ENST00000506042 CLASP1Q7Z460 1538 aa37.73■■■■□ 3.63
SQSTM1-210ENST00000506042 GAPVD1Q14C86 1478 aa37.73■■■■□ 3.63
SQSTM1-210ENST00000506042 SUPT5HO00267 1087 aaKnown RBP37.73■■■■□ 3.63
SQSTM1-210ENST00000506042 PBRM1Q86U86 1689 aa37.72■■■■□ 3.63
SQSTM1-210ENST00000506042 ABCA10Q8WWZ4 1543 aa37.65■■■■□ 3.62
SQSTM1-210ENST00000506042 WRNQ14191 1432 aaPredicted RBP eCLIP37.57■■■■□ 3.6
SQSTM1-210ENST00000506042 ABCA5Q8WWZ7 1642 aa37.57■■■■□ 3.6
SQSTM1-210ENST00000506042 TOP2BQ02880 1626 aa37.4■■■■□ 3.58
SQSTM1-210ENST00000506042 BIVM-ERCC5R4GMW8 1640 aa37.4■■■■□ 3.58
SQSTM1-210ENST00000506042 GRIN2AQ12879 1464 aa37.37■■■■□ 3.57
SQSTM1-210ENST00000506042 ADAMTS12P58397 1594 aa37.31■■■■□ 3.56
SQSTM1-210ENST00000506042 FHAD1B1AJZ9 1412 aa37.27■■■■□ 3.56
SQSTM1-210ENST00000506042 ERICH3Q5RHP9 1530 aa37.25■■■■□ 3.55
SQSTM1-210ENST00000506042 NUP160Q12769 1436 aa37.2■■■■□ 3.55
SQSTM1-210ENST00000506042 CEP170Q5SW79 1584 aa37.14■■■■□ 3.54
SQSTM1-210ENST00000506042 SHROOM2Q13796 1616 aa37.06■■■■□ 3.52
SQSTM1-210ENST00000506042 ERCC6L2Q5T890 1561 aa36.98■■■■□ 3.51
SQSTM1-210ENST00000506042 PRG4Q92954 1404 aaPredicted RBP36.9■■■■□ 3.5
SQSTM1-210ENST00000506042 AEBP2Q6ZN18 517 aaPredicted RBP36.86■■■■□ 3.49
SQSTM1-210ENST00000506042 JPH4Q96JJ6 628 aa36.86■■■■□ 3.49
SQSTM1-210ENST00000506042 NPM1P06748 294 aaKnown RBP eCLIP36.79■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms