RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-222ENST00000506018 NISCHQ9Y2I1 1504 aa25.66■■□□□ 1.7
NR1I3-222ENST00000506018 CCDC180Q9P1Z9 1646 aa23.03■■□□□ 1.28
NR1I3-222ENST00000506018 ABCC9O60706 1549 aa22.73■■□□□ 1.23
NR1I3-222ENST00000506018 AEBP2Q6ZN18 517 aaPredicted RBP22.59■■□□□ 1.21
NR1I3-222ENST00000506018 CHIC1Q5VXU3 224 aa22.12■■□□□ 1.13
NR1I3-222ENST00000506018 RB1CC1Q8TDY2 1594 aa21.81■■□□□ 1.08
NR1I3-222ENST00000506018 NACADO15069 1562 aa21.7■■□□□ 1.06
NR1I3-222ENST00000506018 DCAF8L2P0C7V8 631 aa21.6■■□□□ 1.05
NR1I3-222ENST00000506018 MYO15BQ96JP2 1530 aa21.45■■□□□ 1.02
NR1I3-222ENST00000506018 ZCCHC6Q5VYS8 1495 aaKnown RBP21.31■■□□□ 1
NR1I3-222ENST00000506018 UNC13AQ9UPW8 1703 aa21.3■■□□□ 1
NR1I3-222ENST00000506018 DCAF1Q9Y4B6 1507 aa21.24■□□□□ 0.99
NR1I3-222ENST00000506018 PABPN1Q86U42 306 aaKnown RBP eCLIP21.16■□□□□ 0.98
NR1I3-222ENST00000506018 BICRAQ9NZM4 1560 aa21.06■□□□□ 0.96
NR1I3-222ENST00000506018 DNAJC5BQ9UF47 199 aa21.04■□□□□ 0.96
NR1I3-222ENST00000506018 SCRIBQ14160 1630 aa20.93■□□□□ 0.94
NR1I3-222ENST00000506018 SHROOM4Q9ULL8 1493 aa20.92■□□□□ 0.94
NR1I3-222ENST00000506018 EIF4G1Q04637 1599 aaKnown RBP20.58■□□□□ 0.89
NR1I3-222ENST00000506018 CC2D2AQ9P2K1 1620 aa20.58■□□□□ 0.88
NR1I3-222ENST00000506018 CECR2Q9BXF3 1484 aa20.48■□□□□ 0.87
NR1I3-222ENST00000506018 SMARCA4P51532 1647 aa20■□□□□ 0.79
NR1I3-222ENST00000506018 NCAPD3P42695 1498 aa19.97■□□□□ 0.79
NR1I3-222ENST00000506018 SMARCA2P51531 1590 aa19.97■□□□□ 0.79
NR1I3-222ENST00000506018 BAZ1AQ9NRL2 1556 aaPredicted RBP19.95■□□□□ 0.78
NR1I3-222ENST00000506018 ATAD2BQ9ULI0 1458 aa19.93■□□□□ 0.78
NR1I3-222ENST00000506018 HMGXB3Q12766 1538 aa19.89■□□□□ 0.77
NR1I3-222ENST00000506018 PEG3Q9GZU2 1588 aa19.8■□□□□ 0.76
NR1I3-222ENST00000506018 BAZ1BQ9UIG0 1483 aaKnown RBP19.8■□□□□ 0.76
NR1I3-222ENST00000506018 MROH2BQ7Z745 1585 aa19.73■□□□□ 0.75
NR1I3-222ENST00000506018 ERCC6Q03468 1493 aa19.69■□□□□ 0.74
NR1I3-222ENST00000506018 CUX2O14529 1486 aa19.57■□□□□ 0.72
NR1I3-222ENST00000506018 LAMC3Q9Y6N6 1575 aa19.55■□□□□ 0.72
NR1I3-222ENST00000506018 NESP48681 1621 aa19.55■□□□□ 0.72
NR1I3-222ENST00000506018 WIZO95785 1651 aa19.54■□□□□ 0.72
NR1I3-222ENST00000506018 PHF23Q9BUL5 403 aaPredicted RBP19.44■□□□□ 0.7
NR1I3-222ENST00000506018 PDS5BQ9NTI5 1447 aa19.43■□□□□ 0.7
NR1I3-222ENST00000506018 RSF1Q96T23 1441 aaPredicted RBP19.4■□□□□ 0.7
NR1I3-222ENST00000506018 KIF21AQ7Z4S6 1674 aa19.4■□□□□ 0.7
NR1I3-222ENST00000506018 CADPSQ9ULU8 1353 aa19.38■□□□□ 0.69
NR1I3-222ENST00000506018 THOC2Q8NI27 1593 aaKnown RBP19.37■□□□□ 0.69
NR1I3-222ENST00000506018 TOP2AP11388 1531 aaKnown RBP19.34■□□□□ 0.69
NR1I3-222ENST00000506018 DNAJC5Q9H3Z4 198 aa19.27■□□□□ 0.68
NR1I3-222ENST00000506018 MRC2Q9UBG0 1479 aa19.22■□□□□ 0.67
NR1I3-222ENST00000506018 CEP164Q9UPV0 1460 aa19.2■□□□□ 0.66
NR1I3-222ENST00000506018 SENP3Q9H4L4 574 aaPredicted RBP19.2■□□□□ 0.66
NR1I3-222ENST00000506018 CFTRP13569 1480 aa19.2■□□□□ 0.66
NR1I3-222ENST00000506018 FANCD2Q9BXW9 1451 aa19.17■□□□□ 0.66
NR1I3-222ENST00000506018 WDR62O43379 1518 aa19.16■□□□□ 0.66
NR1I3-222ENST00000506018 PRDM2Q13029 1718 aa19.15■□□□□ 0.66
NR1I3-222ENST00000506018 CCDC88BA6NC98 1476 aa19.07■□□□□ 0.64
NR1I3-222ENST00000506018 URB2Q14146 1524 aaKnown RBP18.96■□□□□ 0.63
NR1I3-222ENST00000506018 ABCC8Q09428 1581 aa18.88■□□□□ 0.61
NR1I3-222ENST00000506018 TOPBP1Q92547 1522 aa18.82■□□□□ 0.6
NR1I3-222ENST00000506018 IFT140Q96RY7 1462 aa18.81■□□□□ 0.6
NR1I3-222ENST00000506018 DNMBPQ6XZF7 1577 aa18.8■□□□□ 0.6
NR1I3-222ENST00000506018 SUPT5HO00267 1087 aaKnown RBP18.72■□□□□ 0.59
NR1I3-222ENST00000506018 OSCARQ8IYS5 282 aa18.7■□□□□ 0.58
NR1I3-222ENST00000506018 ZNF608Q9ULD9 1512 aaPredicted RBP18.68■□□□□ 0.58
NR1I3-222ENST00000506018 EIF4G3O43432 1585 aaKnown RBP18.66■□□□□ 0.58
NR1I3-222ENST00000506018 POLA1P09884 1462 aaPredicted RBP18.64■□□□□ 0.57
NR1I3-222ENST00000506018 TARBP1Q13395 1621 aaKnown RBP18.63■□□□□ 0.57
NR1I3-222ENST00000506018 SOGA1O94964 1423 aa18.57■□□□□ 0.56
NR1I3-222ENST00000506018 WDR97A6NE52 1622 aa18.56■□□□□ 0.56
NR1I3-222ENST00000506018 AQRO60306 1485 aaKnown RBP eCLIP18.56■□□□□ 0.56
NR1I3-222ENST00000506018 FGD5Q6ZNL6 1462 aa18.56■□□□□ 0.56
NR1I3-222ENST00000506018 CUX1P39880 1505 aa18.54■□□□□ 0.56
NR1I3-222ENST00000506018 TRIM41Q8WV44 630 aa18.54■□□□□ 0.56
NR1I3-222ENST00000506018 RAD54L2Q9Y4B4 1467 aa18.53■□□□□ 0.56
NR1I3-222ENST00000506018 CHD1O14646 1710 aa18.51■□□□□ 0.55
NR1I3-222ENST00000506018 TDRD9Q8NDG6 1382 aaKnown RBP18.47■□□□□ 0.55
NR1I3-222ENST00000506018 FBLN2P98095 1184 aa18.45■□□□□ 0.54
NR1I3-222ENST00000506018 RIMBP3CA6NJZ7 1639 aa18.43■□□□□ 0.54
NR1I3-222ENST00000506018 RIMBP3BA6NNM3 1639 aa18.43■□□□□ 0.54
NR1I3-222ENST00000506018 RIMBP3Q9UFD9 1639 aa18.43■□□□□ 0.54
NR1I3-222ENST00000506018 GRIN2BQ13224 1484 aa18.4■□□□□ 0.54
NR1I3-222ENST00000506018 SNAPC4Q5SXM2 1469 aa18.4■□□□□ 0.54
NR1I3-222ENST00000506018 MAGI1Q96QZ7 1491 aaPredicted RBP18.4■□□□□ 0.54
NR1I3-222ENST00000506018 PBRM1Q86U86 1689 aa18.39■□□□□ 0.53
NR1I3-222ENST00000506018 ARHGEF11O15085 1522 aa18.37■□□□□ 0.53
NR1I3-222ENST00000506018 ABCA10Q8WWZ4 1543 aa18.37■□□□□ 0.53
NR1I3-222ENST00000506018 BIVM-ERCC5R4GMW8 1640 aa18.36■□□□□ 0.53
NR1I3-222ENST00000506018 CHMP7Q8WUX9 453 aaPredicted RBP18.36■□□□□ 0.53
NR1I3-222ENST00000506018 TOP2BQ02880 1626 aa18.36■□□□□ 0.53
NR1I3-222ENST00000506018 GAPVD1Q14C86 1478 aa18.36■□□□□ 0.53
NR1I3-222ENST00000506018 WRNQ14191 1432 aaPredicted RBP eCLIP18.35■□□□□ 0.53
NR1I3-222ENST00000506018 SYNJ1O43426 1573 aa18.33■□□□□ 0.53
NR1I3-222ENST00000506018 ABCA5Q8WWZ7 1642 aa18.33■□□□□ 0.52
NR1I3-222ENST00000506018 SYNJ2O15056 1496 aa18.32■□□□□ 0.52
NR1I3-222ENST00000506018 CLASP1Q7Z460 1538 aa18.25■□□□□ 0.51
NR1I3-222ENST00000506018 CYB5RLQ6IPT4 315 aa18.22■□□□□ 0.51
NR1I3-222ENST00000506018 ARAP1Q96P48 1450 aa18.18■□□□□ 0.5
NR1I3-222ENST00000506018 ADAMTS12P58397 1594 aa18.17■□□□□ 0.5
NR1I3-222ENST00000506018 ERICH3Q5RHP9 1530 aa18.17■□□□□ 0.5
NR1I3-222ENST00000506018 GRIN2AQ12879 1464 aa18.16■□□□□ 0.5
NR1I3-222ENST00000506018 FHAD1B1AJZ9 1412 aa18.14■□□□□ 0.49
NR1I3-222ENST00000506018 NUP160Q12769 1436 aa18.06■□□□□ 0.48
NR1I3-222ENST00000506018 CEP170Q5SW79 1584 aa18.06■□□□□ 0.48
NR1I3-222ENST00000506018 KIF27Q86VH2 1401 aa18.02■□□□□ 0.48
NR1I3-222ENST00000506018 TRHP20396 242 aaPredicted RBP18.01■□□□□ 0.47
NR1I3-222ENST00000506018 PLPPR3Q6T4P5 718 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms