RNA–Protein interactions for RNA: ENST00000505964.1

SGCA-205, Transcript of sarcoglycan alpha, humanhuman

TSL 2

Gene SGCA, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-205ENST00000505964 NISCHQ9Y2I1 1504 aa26.53■■□□□ 1.84
SGCA-205ENST00000505964 ABCC9O60706 1549 aa24.41■■□□□ 1.5
SGCA-205ENST00000505964 CCDC180Q9P1Z9 1646 aa24■■□□□ 1.43
SGCA-205ENST00000505964 DNAJC5BQ9UF47 199 aa23.22■■□□□ 1.31
SGCA-205ENST00000505964 RB1CC1Q8TDY2 1594 aa23.01■■□□□ 1.27
SGCA-205ENST00000505964 NACADO15069 1562 aa22.73■■□□□ 1.23
SGCA-205ENST00000505964 UNC13AQ9UPW8 1703 aa22.68■■□□□ 1.22
SGCA-205ENST00000505964 PABPN1Q86U42 306 aaKnown RBP eCLIP22.66■■□□□ 1.22
SGCA-205ENST00000505964 DCAF8L2P0C7V8 631 aa22.63■■□□□ 1.21
SGCA-205ENST00000505964 BICRAQ9NZM4 1560 aa22.4■■□□□ 1.18
SGCA-205ENST00000505964 MYO15BQ96JP2 1530 aa22.21■■□□□ 1.15
SGCA-205ENST00000505964 ZCCHC6Q5VYS8 1495 aaKnown RBP22.11■■□□□ 1.13
SGCA-205ENST00000505964 CC2D2AQ9P2K1 1620 aa22.04■■□□□ 1.12
SGCA-205ENST00000505964 CECR2Q9BXF3 1484 aa21.98■■□□□ 1.11
SGCA-205ENST00000505964 SCRIBQ14160 1630 aa21.93■■□□□ 1.1
SGCA-205ENST00000505964 DCAF1Q9Y4B6 1507 aa21.91■■□□□ 1.1
SGCA-205ENST00000505964 SHROOM4Q9ULL8 1493 aa21.9■■□□□ 1.1
SGCA-205ENST00000505964 EIF4G1Q04637 1599 aaKnown RBP21.87■■□□□ 1.09
SGCA-205ENST00000505964 DNAJC5Q9H3Z4 198 aa21.52■■□□□ 1.04
SGCA-205ENST00000505964 CUX2O14529 1486 aa21.11■□□□□ 0.97
SGCA-205ENST00000505964 ERCC6Q03468 1493 aa21.08■□□□□ 0.97
SGCA-205ENST00000505964 NCAPD3P42695 1498 aa20.95■□□□□ 0.94
SGCA-205ENST00000505964 ATAD2BQ9ULI0 1458 aa20.89■□□□□ 0.94
SGCA-205ENST00000505964 NESP48681 1621 aa20.89■□□□□ 0.93
SGCA-205ENST00000505964 SMARCA4P51532 1647 aa20.83■□□□□ 0.93
SGCA-205ENST00000505964 HMGXB3Q12766 1538 aa20.81■□□□□ 0.92
SGCA-205ENST00000505964 SMARCA2P51531 1590 aa20.8■□□□□ 0.92
SGCA-205ENST00000505964 THOC2Q8NI27 1593 aaKnown RBP20.74■□□□□ 0.91
SGCA-205ENST00000505964 BAZ1BQ9UIG0 1483 aaKnown RBP20.69■□□□□ 0.9
SGCA-205ENST00000505964 KIF21AQ7Z4S6 1674 aa20.67■□□□□ 0.9
SGCA-205ENST00000505964 BAZ1AQ9NRL2 1556 aaPredicted RBP20.61■□□□□ 0.89
SGCA-205ENST00000505964 LAMC3Q9Y6N6 1575 aa20.6■□□□□ 0.89
SGCA-205ENST00000505964 PEG3Q9GZU2 1588 aa20.55■□□□□ 0.88
SGCA-205ENST00000505964 TRIM41Q8WV44 630 aa20.54■□□□□ 0.88
SGCA-205ENST00000505964 MROH2BQ7Z745 1585 aa20.48■□□□□ 0.87
SGCA-205ENST00000505964 PDS5BQ9NTI5 1447 aa20.45■□□□□ 0.86
SGCA-205ENST00000505964 MRC2Q9UBG0 1479 aa20.34■□□□□ 0.85
SGCA-205ENST00000505964 CADPSQ9ULU8 1353 aa20.32■□□□□ 0.84
SGCA-205ENST00000505964 WDR62O43379 1518 aa20.31■□□□□ 0.84
SGCA-205ENST00000505964 RSF1Q96T23 1441 aaPredicted RBP20.29■□□□□ 0.84
SGCA-205ENST00000505964 WIZO95785 1651 aa20.29■□□□□ 0.84
SGCA-205ENST00000505964 CEP164Q9UPV0 1460 aa20.2■□□□□ 0.82
SGCA-205ENST00000505964 SUPT5HO00267 1087 aaKnown RBP20.16■□□□□ 0.82
SGCA-205ENST00000505964 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.81
SGCA-205ENST00000505964 OSCARQ8IYS5 282 aa20.06■□□□□ 0.8
SGCA-205ENST00000505964 URB2Q14146 1524 aaKnown RBP20.02■□□□□ 0.8
SGCA-205ENST00000505964 CFTRP13569 1480 aa20.01■□□□□ 0.79
SGCA-205ENST00000505964 TOP2AP11388 1531 aaKnown RBP19.99■□□□□ 0.79
SGCA-205ENST00000505964 RIMBP3CA6NJZ7 1639 aa19.98■□□□□ 0.79
SGCA-205ENST00000505964 RIMBP3BA6NNM3 1639 aa19.98■□□□□ 0.79
SGCA-205ENST00000505964 RIMBP3Q9UFD9 1639 aa19.98■□□□□ 0.79
SGCA-205ENST00000505964 PRDM2Q13029 1718 aa19.95■□□□□ 0.78
SGCA-205ENST00000505964 ZNF608Q9ULD9 1512 aaPredicted RBP19.85■□□□□ 0.77
SGCA-205ENST00000505964 ARHGEF11O15085 1522 aa19.82■□□□□ 0.76
SGCA-205ENST00000505964 IFT140Q96RY7 1462 aa19.77■□□□□ 0.76
SGCA-205ENST00000505964 EIF4G3O43432 1585 aaKnown RBP19.74■□□□□ 0.75
SGCA-205ENST00000505964 CHD1O14646 1710 aa19.74■□□□□ 0.75
SGCA-205ENST00000505964 TOPBP1Q92547 1522 aa19.73■□□□□ 0.75
SGCA-205ENST00000505964 CCDC88BA6NC98 1476 aa19.71■□□□□ 0.75
SGCA-205ENST00000505964 CYB5RLQ6IPT4 315 aa19.69■□□□□ 0.74
SGCA-205ENST00000505964 DNMBPQ6XZF7 1577 aa19.62■□□□□ 0.73
SGCA-205ENST00000505964 AQRO60306 1485 aaKnown RBP eCLIP19.61■□□□□ 0.73
SGCA-205ENST00000505964 TRHP20396 242 aaPredicted RBP19.61■□□□□ 0.73
SGCA-205ENST00000505964 TARBP1Q13395 1621 aaKnown RBP19.61■□□□□ 0.73
SGCA-205ENST00000505964 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
SGCA-205ENST00000505964 FBLN2P98095 1184 aa19.57■□□□□ 0.72
SGCA-205ENST00000505964 ABCC8Q09428 1581 aa19.57■□□□□ 0.72
SGCA-205ENST00000505964 POLA1P09884 1462 aaPredicted RBP19.49■□□□□ 0.71
SGCA-205ENST00000505964 RAD54L2Q9Y4B4 1467 aa19.47■□□□□ 0.71
SGCA-205ENST00000505964 TDRD9Q8NDG6 1382 aaKnown RBP19.42■□□□□ 0.7
SGCA-205ENST00000505964 SNAPC4Q5SXM2 1469 aa19.4■□□□□ 0.7
SGCA-205ENST00000505964 CLASP1Q7Z460 1538 aa19.39■□□□□ 0.69
SGCA-205ENST00000505964 SOGA1O94964 1423 aa19.38■□□□□ 0.69
SGCA-205ENST00000505964 SYNJ1O43426 1573 aa19.34■□□□□ 0.69
SGCA-205ENST00000505964 FGD5Q6ZNL6 1462 aa19.33■□□□□ 0.68
SGCA-205ENST00000505964 AEBP2Q6ZN18 517 aaPredicted RBP19.3■□□□□ 0.68
SGCA-205ENST00000505964 CHMP7Q8WUX9 453 aaPredicted RBP19.3■□□□□ 0.68
SGCA-205ENST00000505964 WDR97A6NE52 1622 aa19.29■□□□□ 0.68
SGCA-205ENST00000505964 PBRM1Q86U86 1689 aa19.28■□□□□ 0.68
SGCA-205ENST00000505964 MAGI1Q96QZ7 1491 aaPredicted RBP19.28■□□□□ 0.68
SGCA-205ENST00000505964 CUX1P39880 1505 aa19.27■□□□□ 0.68
SGCA-205ENST00000505964 GRIN2BQ13224 1484 aa19.24■□□□□ 0.67
SGCA-205ENST00000505964 SYNJ2O15056 1496 aa19.22■□□□□ 0.67
SGCA-205ENST00000505964 CHIC1Q5VXU3 224 aa19.21■□□□□ 0.67
SGCA-205ENST00000505964 GAPVD1Q14C86 1478 aa19.2■□□□□ 0.66
SGCA-205ENST00000505964 ERCC6L2Q5T890 1561 aa19.14■□□□□ 0.65
SGCA-205ENST00000505964 WRNQ14191 1432 aaPredicted RBP eCLIP19.13■□□□□ 0.65
SGCA-205ENST00000505964 ABCA5Q8WWZ7 1642 aa19.11■□□□□ 0.65
SGCA-205ENST00000505964 BIVM-ERCC5R4GMW8 1640 aa19.1■□□□□ 0.65
SGCA-205ENST00000505964 TOP2BQ02880 1626 aa19.07■□□□□ 0.64
SGCA-205ENST00000505964 ABCA10Q8WWZ4 1543 aa19.05■□□□□ 0.64
SGCA-205ENST00000505964 CEP170Q5SW79 1584 aa19.02■□□□□ 0.64
SGCA-205ENST00000505964 GRIN2AQ12879 1464 aa19.02■□□□□ 0.63
SGCA-205ENST00000505964 KIF13AQ9H1H9 1805 aa19.02■□□□□ 0.63
SGCA-205ENST00000505964 ADAMTS12P58397 1594 aa19■□□□□ 0.63
SGCA-205ENST00000505964 SHROOM2Q13796 1616 aa18.95■□□□□ 0.62
SGCA-205ENST00000505964 NUP160Q12769 1436 aa18.93■□□□□ 0.62
SGCA-205ENST00000505964 FHAD1B1AJZ9 1412 aa18.85■□□□□ 0.61
SGCA-205ENST00000505964 PRG4Q92954 1404 aaPredicted RBP18.82■□□□□ 0.6
SGCA-205ENST00000505964 ERICH3Q5RHP9 1530 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms