RNA–Protein interactions for RNA: ENST00000505728.1

COL4A5-208, Transcript of collagen type IV alpha 5 chain, humanhuman

TSL 3

Gene COL4A5, Length 537 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5-208ENST00000505728 NISCHQ9Y2I1 1504 aa18.01■□□□□ 0.47
COL4A5-208ENST00000505728 ABCC9O60706 1549 aa16.04■□□□□ 0.16
COL4A5-208ENST00000505728 CCDC180Q9P1Z9 1646 aa16.03■□□□□ 0.16
COL4A5-208ENST00000505728 RB1CC1Q8TDY2 1594 aa15.24■□□□□ 0.03
COL4A5-208ENST00000505728 NACADO15069 1562 aa15.12■□□□□ 0.01
COL4A5-208ENST00000505728 ZCCHC6Q5VYS8 1495 aaKnown RBP15.12■□□□□ 0.01
COL4A5-208ENST00000505728 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
COL4A5-208ENST00000505728 UNC13AQ9UPW8 1703 aa15.03■□□□□ -0
COL4A5-208ENST00000505728 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
COL4A5-208ENST00000505728 DCAF1Q9Y4B6 1507 aa14.93□□□□□ -0.02
COL4A5-208ENST00000505728 PABPN1Q86U42 306 aaKnown RBP eCLIP14.9□□□□□ -0.02
COL4A5-208ENST00000505728 MYO15BQ96JP2 1530 aa14.88□□□□□ -0.03
COL4A5-208ENST00000505728 BICRAQ9NZM4 1560 aa14.86□□□□□ -0.03
COL4A5-208ENST00000505728 SHROOM4Q9ULL8 1493 aa14.67□□□□□ -0.06
COL4A5-208ENST00000505728 AEBP2Q6ZN18 517 aaPredicted RBP14.62□□□□□ -0.07
COL4A5-208ENST00000505728 SCRIBQ14160 1630 aa14.59□□□□□ -0.07
COL4A5-208ENST00000505728 CC2D2AQ9P2K1 1620 aa14.52□□□□□ -0.08
COL4A5-208ENST00000505728 EIF4G1Q04637 1599 aaKnown RBP14.46□□□□□ -0.09
COL4A5-208ENST00000505728 CECR2Q9BXF3 1484 aa14.44□□□□□ -0.1
COL4A5-208ENST00000505728 SUPT5HO00267 1087 aaKnown RBP14.2□□□□□ -0.14
COL4A5-208ENST00000505728 RSF1Q96T23 1441 aaPredicted RBP13.99□□□□□ -0.17
COL4A5-208ENST00000505728 NCAPD3P42695 1498 aa13.94□□□□□ -0.18
COL4A5-208ENST00000505728 SMARCA4P51532 1647 aa13.92□□□□□ -0.18
COL4A5-208ENST00000505728 ATAD2BQ9ULI0 1458 aa13.91□□□□□ -0.18
COL4A5-208ENST00000505728 BAZ1AQ9NRL2 1556 aaPredicted RBP13.9□□□□□ -0.18
COL4A5-208ENST00000505728 MROH2BQ7Z745 1585 aa13.89□□□□□ -0.19
COL4A5-208ENST00000505728 CHIC1Q5VXU3 224 aa13.88□□□□□ -0.19
COL4A5-208ENST00000505728 DNAJC5Q9H3Z4 198 aa13.86□□□□□ -0.19
COL4A5-208ENST00000505728 HMGXB3Q12766 1538 aa13.85□□□□□ -0.19
COL4A5-208ENST00000505728 SMARCA2P51531 1590 aa13.85□□□□□ -0.19
COL4A5-208ENST00000505728 CUX2O14529 1486 aa13.82□□□□□ -0.2
COL4A5-208ENST00000505728 ERCC6Q03468 1493 aa13.81□□□□□ -0.2
COL4A5-208ENST00000505728 NESP48681 1621 aa13.79□□□□□ -0.2
COL4A5-208ENST00000505728 PEG3Q9GZU2 1588 aa13.78□□□□□ -0.2
COL4A5-208ENST00000505728 WIZO95785 1651 aa13.76□□□□□ -0.21
COL4A5-208ENST00000505728 BAZ1BQ9UIG0 1483 aaKnown RBP13.75□□□□□ -0.21
COL4A5-208ENST00000505728 THOC2Q8NI27 1593 aaKnown RBP13.69□□□□□ -0.22
COL4A5-208ENST00000505728 KIF21AQ7Z4S6 1674 aa13.66□□□□□ -0.22
COL4A5-208ENST00000505728 LAMC3Q9Y6N6 1575 aa13.66□□□□□ -0.22
COL4A5-208ENST00000505728 TOP2AP11388 1531 aaKnown RBP13.65□□□□□ -0.22
COL4A5-208ENST00000505728 PDS5BQ9NTI5 1447 aa13.53□□□□□ -0.24
COL4A5-208ENST00000505728 CCDC88BA6NC98 1476 aa13.53□□□□□ -0.24
COL4A5-208ENST00000505728 CADPSQ9ULU8 1353 aa13.49□□□□□ -0.25
COL4A5-208ENST00000505728 WDR62O43379 1518 aa13.45□□□□□ -0.26
COL4A5-208ENST00000505728 MRC2Q9UBG0 1479 aa13.45□□□□□ -0.26
COL4A5-208ENST00000505728 TRIM41Q8WV44 630 aa13.39□□□□□ -0.27
COL4A5-208ENST00000505728 CEP164Q9UPV0 1460 aa13.38□□□□□ -0.27
COL4A5-208ENST00000505728 FANCD2Q9BXW9 1451 aa13.37□□□□□ -0.27
COL4A5-208ENST00000505728 CFTRP13569 1480 aa13.36□□□□□ -0.27
COL4A5-208ENST00000505728 PRDM2Q13029 1718 aa13.33□□□□□ -0.27
COL4A5-208ENST00000505728 URB2Q14146 1524 aaKnown RBP13.29□□□□□ -0.28
COL4A5-208ENST00000505728 ABCC8Q09428 1581 aa13.2□□□□□ -0.3
COL4A5-208ENST00000505728 WRNQ14191 1432 aaPredicted RBP eCLIP13.17□□□□□ -0.3
COL4A5-208ENST00000505728 ZNF608Q9ULD9 1512 aaPredicted RBP13.14□□□□□ -0.31
COL4A5-208ENST00000505728 OSCARQ8IYS5 282 aa13.13□□□□□ -0.31
COL4A5-208ENST00000505728 TOPBP1Q92547 1522 aa13.13□□□□□ -0.31
COL4A5-208ENST00000505728 LOC105371045A0A1W2PR82 267 aa13.12□□□□□ -0.31
COL4A5-208ENST00000505728 IFT140Q96RY7 1462 aa13.1□□□□□ -0.31
COL4A5-208ENST00000505728 FAM9AQ8IZU1 332 aaPredicted RBP13.09□□□□□ -0.31
COL4A5-208ENST00000505728 EIF4G3O43432 1585 aaKnown RBP13.08□□□□□ -0.32
COL4A5-208ENST00000505728 DNMBPQ6XZF7 1577 aa13.08□□□□□ -0.32
COL4A5-208ENST00000505728 RIMBP3CA6NJZ7 1639 aa13.08□□□□□ -0.32
COL4A5-208ENST00000505728 RIMBP3BA6NNM3 1639 aa13.08□□□□□ -0.32
COL4A5-208ENST00000505728 RIMBP3Q9UFD9 1639 aa13.08□□□□□ -0.32
COL4A5-208ENST00000505728 EEA1Q15075 1411 aa13.07□□□□□ -0.32
COL4A5-208ENST00000505728 SYNJ1O43426 1573 aa13.07□□□□□ -0.32
COL4A5-208ENST00000505728 TARBP1Q13395 1621 aaKnown RBP13.06□□□□□ -0.32
COL4A5-208ENST00000505728 TOP2BQ02880 1626 aa13.05□□□□□ -0.32
COL4A5-208ENST00000505728 CHD1O14646 1710 aa13.04□□□□□ -0.32
COL4A5-208ENST00000505728 BIVM-ERCC5R4GMW8 1640 aa13.03□□□□□ -0.32
COL4A5-208ENST00000505728 SOGA1O94964 1423 aa13□□□□□ -0.33
COL4A5-208ENST00000505728 CSRNP3Q8WYN3 585 aa13□□□□□ -0.33
COL4A5-208ENST00000505728 ARHGEF11O15085 1522 aa12.99□□□□□ -0.33
COL4A5-208ENST00000505728 AQRO60306 1485 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL4A5-208ENST00000505728 POLA1P09884 1462 aaPredicted RBP12.98□□□□□ -0.33
COL4A5-208ENST00000505728 CUX1P39880 1505 aa12.98□□□□□ -0.33
COL4A5-208ENST00000505728 RAD54L2Q9Y4B4 1467 aa12.95□□□□□ -0.34
COL4A5-208ENST00000505728 RUSC2Q8N2Y8 1516 aa12.94□□□□□ -0.34
COL4A5-208ENST00000505728 FGD5Q6ZNL6 1462 aa12.9□□□□□ -0.34
COL4A5-208ENST00000505728 TDRD9Q8NDG6 1382 aaKnown RBP12.89□□□□□ -0.35
COL4A5-208ENST00000505728 WDR97A6NE52 1622 aa12.88□□□□□ -0.35
COL4A5-208ENST00000505728 ARAP1Q96P48 1450 aa12.87□□□□□ -0.35
COL4A5-208ENST00000505728 TNIKQ9UKE5 1360 aa12.86□□□□□ -0.35
COL4A5-208ENST00000505728 FBLN2P98095 1184 aa12.86□□□□□ -0.35
COL4A5-208ENST00000505728 KIF27Q86VH2 1401 aa12.86□□□□□ -0.35
COL4A5-208ENST00000505728 GOLGA3Q08378 1498 aa12.85□□□□□ -0.35
COL4A5-208ENST00000505728 SNAPC4Q5SXM2 1469 aa12.85□□□□□ -0.35
COL4A5-208ENST00000505728 CYB5RLQ6IPT4 315 aa12.85□□□□□ -0.35
COL4A5-208ENST00000505728 EHMT2Q96KQ7 1210 aa12.85□□□□□ -0.35
COL4A5-208ENST00000505728 KIF21BO75037 1637 aa12.84□□□□□ -0.35
COL4A5-208ENST00000505728 CLASP1Q7Z460 1538 aa12.84□□□□□ -0.35
COL4A5-208ENST00000505728 PBRM1Q86U86 1689 aa12.84□□□□□ -0.35
COL4A5-208ENST00000505728 UBTFP17480 764 aaKnown RBP12.81□□□□□ -0.36
COL4A5-208ENST00000505728 MAGI1Q96QZ7 1491 aaPredicted RBP12.8□□□□□ -0.36
COL4A5-208ENST00000505728 GRIN2BQ13224 1484 aa12.79□□□□□ -0.36
COL4A5-208ENST00000505728 PRXQ9BXM0 1461 aa12.78□□□□□ -0.36
COL4A5-208ENST00000505728 ABCA5Q8WWZ7 1642 aa12.77□□□□□ -0.36
COL4A5-208ENST00000505728 SYNJ2O15056 1496 aa12.77□□□□□ -0.37
COL4A5-208ENST00000505728 ABCA10Q8WWZ4 1543 aa12.76□□□□□ -0.37
COL4A5-208ENST00000505728 GAPVD1Q14C86 1478 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms