RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 NISCHQ9Y2I1 1504 aa24.85■■□□□ 1.57
NEDD9-210ENST00000505589 ABCC9O60706 1549 aa22.65■■□□□ 1.22
NEDD9-210ENST00000505589 CCDC180Q9P1Z9 1646 aa22.38■■□□□ 1.17
NEDD9-210ENST00000505589 RB1CC1Q8TDY2 1594 aa21.52■■□□□ 1.04
NEDD9-210ENST00000505589 DNAJC5BQ9UF47 199 aa21.49■■□□□ 1.03
NEDD9-210ENST00000505589 NACADO15069 1562 aa21.32■■□□□ 1
NEDD9-210ENST00000505589 DCAF8L2P0C7V8 631 aa21.26■□□□□ 0.99
NEDD9-210ENST00000505589 PABPN1Q86U42 306 aaKnown RBP eCLIP21.11■□□□□ 0.97
NEDD9-210ENST00000505589 MYO15BQ96JP2 1530 aa20.97■□□□□ 0.95
NEDD9-210ENST00000505589 UNC13AQ9UPW8 1703 aa20.81■□□□□ 0.92
NEDD9-210ENST00000505589 BICRAQ9NZM4 1560 aa20.74■□□□□ 0.91
NEDD9-210ENST00000505589 SHROOM4Q9ULL8 1493 aa20.65■□□□□ 0.9
NEDD9-210ENST00000505589 DCAF1Q9Y4B6 1507 aa20.57■□□□□ 0.88
NEDD9-210ENST00000505589 CECR2Q9BXF3 1484 aa20.5■□□□□ 0.87
NEDD9-210ENST00000505589 ZCCHC6Q5VYS8 1495 aaKnown RBP20.49■□□□□ 0.87
NEDD9-210ENST00000505589 CC2D2AQ9P2K1 1620 aa20.43■□□□□ 0.86
NEDD9-210ENST00000505589 EIF4G1Q04637 1599 aaKnown RBP20.34■□□□□ 0.85
NEDD9-210ENST00000505589 SCRIBQ14160 1630 aa20.3■□□□□ 0.84
NEDD9-210ENST00000505589 DNAJC5Q9H3Z4 198 aa20.11■□□□□ 0.81
NEDD9-210ENST00000505589 CUX2O14529 1486 aa19.74■□□□□ 0.75
NEDD9-210ENST00000505589 NCAPD3P42695 1498 aa19.7■□□□□ 0.74
NEDD9-210ENST00000505589 ERCC6Q03468 1493 aa19.68■□□□□ 0.74
NEDD9-210ENST00000505589 ATAD2BQ9ULI0 1458 aa19.54■□□□□ 0.72
NEDD9-210ENST00000505589 SMARCA2P51531 1590 aa19.53■□□□□ 0.72
NEDD9-210ENST00000505589 HMGXB3Q12766 1538 aa19.46■□□□□ 0.71
NEDD9-210ENST00000505589 SMARCA4P51532 1647 aa19.38■□□□□ 0.69
NEDD9-210ENST00000505589 AEBP2Q6ZN18 517 aaPredicted RBP19.36■□□□□ 0.69
NEDD9-210ENST00000505589 BAZ1BQ9UIG0 1483 aaKnown RBP19.35■□□□□ 0.69
NEDD9-210ENST00000505589 BAZ1AQ9NRL2 1556 aaPredicted RBP19.34■□□□□ 0.69
NEDD9-210ENST00000505589 NESP48681 1621 aa19.32■□□□□ 0.68
NEDD9-210ENST00000505589 LAMC3Q9Y6N6 1575 aa19.27■□□□□ 0.68
NEDD9-210ENST00000505589 PDS5BQ9NTI5 1447 aa19.27■□□□□ 0.68
NEDD9-210ENST00000505589 PEG3Q9GZU2 1588 aa19.24■□□□□ 0.67
NEDD9-210ENST00000505589 THOC2Q8NI27 1593 aaKnown RBP19.15■□□□□ 0.66
NEDD9-210ENST00000505589 CADPSQ9ULU8 1353 aa19.12■□□□□ 0.65
NEDD9-210ENST00000505589 TRIM41Q8WV44 630 aa19.07■□□□□ 0.64
NEDD9-210ENST00000505589 MROH2BQ7Z745 1585 aa19.06■□□□□ 0.64
NEDD9-210ENST00000505589 KIF21AQ7Z4S6 1674 aa19.02■□□□□ 0.64
NEDD9-210ENST00000505589 MRC2Q9UBG0 1479 aa19■□□□□ 0.63
NEDD9-210ENST00000505589 OSCARQ8IYS5 282 aa18.94■□□□□ 0.62
NEDD9-210ENST00000505589 WDR62O43379 1518 aa18.92■□□□□ 0.62
NEDD9-210ENST00000505589 CEP164Q9UPV0 1460 aa18.89■□□□□ 0.61
NEDD9-210ENST00000505589 FANCD2Q9BXW9 1451 aa18.83■□□□□ 0.6
NEDD9-210ENST00000505589 WIZO95785 1651 aa18.79■□□□□ 0.6
NEDD9-210ENST00000505589 CFTRP13569 1480 aa18.78■□□□□ 0.6
NEDD9-210ENST00000505589 RSF1Q96T23 1441 aaPredicted RBP18.65■□□□□ 0.58
NEDD9-210ENST00000505589 URB2Q14146 1524 aaKnown RBP18.61■□□□□ 0.57
NEDD9-210ENST00000505589 TOP2AP11388 1531 aaKnown RBP18.6■□□□□ 0.57
NEDD9-210ENST00000505589 IFT140Q96RY7 1462 aa18.56■□□□□ 0.56
NEDD9-210ENST00000505589 ABCC8Q09428 1581 aa18.53■□□□□ 0.56
NEDD9-210ENST00000505589 RIMBP3CA6NJZ7 1639 aa18.45■□□□□ 0.54
NEDD9-210ENST00000505589 RIMBP3BA6NNM3 1639 aa18.45■□□□□ 0.54
NEDD9-210ENST00000505589 RIMBP3Q9UFD9 1639 aa18.45■□□□□ 0.54
NEDD9-210ENST00000505589 CYB5RLQ6IPT4 315 aa18.44■□□□□ 0.54
NEDD9-210ENST00000505589 PRDM2Q13029 1718 aa18.43■□□□□ 0.54
NEDD9-210ENST00000505589 CCDC88BA6NC98 1476 aa18.43■□□□□ 0.54
NEDD9-210ENST00000505589 ZNF608Q9ULD9 1512 aaPredicted RBP18.42■□□□□ 0.54
NEDD9-210ENST00000505589 ARHGEF11O15085 1522 aa18.4■□□□□ 0.54
NEDD9-210ENST00000505589 TOPBP1Q92547 1522 aa18.4■□□□□ 0.54
NEDD9-210ENST00000505589 TRHP20396 242 aaPredicted RBP18.37■□□□□ 0.53
NEDD9-210ENST00000505589 FBLN2P98095 1184 aa18.36■□□□□ 0.53
NEDD9-210ENST00000505589 DNMBPQ6XZF7 1577 aa18.31■□□□□ 0.52
NEDD9-210ENST00000505589 AQRO60306 1485 aaKnown RBP eCLIP18.28■□□□□ 0.526e-8■■■■□ 23.6
NEDD9-210ENST00000505589 EIF4G3O43432 1585 aaKnown RBP18.28■□□□□ 0.52
NEDD9-210ENST00000505589 CHMP7Q8WUX9 453 aaPredicted RBP18.23■□□□□ 0.51
NEDD9-210ENST00000505589 SOGA1O94964 1423 aa18.21■□□□□ 0.51
NEDD9-210ENST00000505589 TARBP1Q13395 1621 aaKnown RBP18.2■□□□□ 0.5
NEDD9-210ENST00000505589 POLA1P09884 1462 aaPredicted RBP18.2■□□□□ 0.5
NEDD9-210ENST00000505589 CHIC1Q5VXU3 224 aa18.18■□□□□ 0.5
NEDD9-210ENST00000505589 ARAP1Q96P48 1450 aa18.17■□□□□ 0.5
NEDD9-210ENST00000505589 CHD1O14646 1710 aa18.16■□□□□ 0.5
NEDD9-210ENST00000505589 TDRD9Q8NDG6 1382 aaKnown RBP18.16■□□□□ 0.5
NEDD9-210ENST00000505589 WDR97A6NE52 1622 aa18.14■□□□□ 0.49
NEDD9-210ENST00000505589 RAD54L2Q9Y4B4 1467 aa18.11■□□□□ 0.49
NEDD9-210ENST00000505589 MAGI1Q96QZ7 1491 aaPredicted RBP18.09■□□□□ 0.49
NEDD9-210ENST00000505589 SYNJ1O43426 1573 aa18.08■□□□□ 0.48
NEDD9-210ENST00000505589 GRIN2BQ13224 1484 aa18.07■□□□□ 0.48
NEDD9-210ENST00000505589 SNAPC4Q5SXM2 1469 aa18.06■□□□□ 0.48
NEDD9-210ENST00000505589 FGD5Q6ZNL6 1462 aa18.03■□□□□ 0.48
NEDD9-210ENST00000505589 SYNJ2O15056 1496 aa18.02■□□□□ 0.48
NEDD9-210ENST00000505589 CLASP1Q7Z460 1538 aa18■□□□□ 0.47
NEDD9-210ENST00000505589 GAPVD1Q14C86 1478 aa17.95■□□□□ 0.46
NEDD9-210ENST00000505589 CUX1P39880 1505 aa17.93■□□□□ 0.46
NEDD9-210ENST00000505589 ABCA10Q8WWZ4 1543 aa17.86■□□□□ 0.45
NEDD9-210ENST00000505589 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
NEDD9-210ENST00000505589 PBRM1Q86U86 1689 aa17.8■□□□□ 0.44
NEDD9-210ENST00000505589 GRIN2AQ12879 1464 aa17.77■□□□□ 0.44
NEDD9-210ENST00000505589 ABCA5Q8WWZ7 1642 aa17.75■□□□□ 0.43
NEDD9-210ENST00000505589 FHAD1B1AJZ9 1412 aa17.74■□□□□ 0.43
NEDD9-210ENST00000505589 NPM1P06748 294 aaKnown RBP eCLIP17.74■□□□□ 0.43
NEDD9-210ENST00000505589 NUP160Q12769 1436 aa17.73■□□□□ 0.43
NEDD9-210ENST00000505589 SUPT5HO00267 1087 aaKnown RBP17.7■□□□□ 0.42
NEDD9-210ENST00000505589 JPH4Q96JJ6 628 aa17.7■□□□□ 0.42
NEDD9-210ENST00000505589 CEP170Q5SW79 1584 aa17.68■□□□□ 0.42
NEDD9-210ENST00000505589 ERICH3Q5RHP9 1530 aa17.66■□□□□ 0.42
NEDD9-210ENST00000505589 ADAMTS12P58397 1594 aa17.63■□□□□ 0.41
NEDD9-210ENST00000505589 PRG4Q92954 1404 aaPredicted RBP17.63■□□□□ 0.41
NEDD9-210ENST00000505589 ERCC6L2Q5T890 1561 aa17.62■□□□□ 0.41
NEDD9-210ENST00000505589 TOP2BQ02880 1626 aa17.61■□□□□ 0.41
NEDD9-210ENST00000505589 SHROOM2Q13796 1616 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms