RNA–Protein interactions for RNA: ENST00000505225.1

RERE-216, Transcript of arginine-glutamic acid dipeptide repeats, humanhuman

TSL 2

Gene RERE, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RERE-216ENST00000505225 NISCHQ9Y2I1 1504 aa18.16■□□□□ 0.5
RERE-216ENST00000505225 CCDC180Q9P1Z9 1646 aa16.56■□□□□ 0.24
RERE-216ENST00000505225 ABCC9O60706 1549 aa16.45■□□□□ 0.22
RERE-216ENST00000505225 RB1CC1Q8TDY2 1594 aa15.69■□□□□ 0.1
RERE-216ENST00000505225 UNC13AQ9UPW8 1703 aa15.56■□□□□ 0.08
RERE-216ENST00000505225 NACADO15069 1562 aa15.54■□□□□ 0.08
RERE-216ENST00000505225 DNAJC5BQ9UF47 199 aa15.51■□□□□ 0.07
RERE-216ENST00000505225 MYO15BQ96JP2 1530 aa15.33■□□□□ 0.05
RERE-216ENST00000505225 BICRAQ9NZM4 1560 aa15.33■□□□□ 0.05
RERE-216ENST00000505225 PABPN1Q86U42 306 aaKnown RBP eCLIP15.12■□□□□ 0.01
RERE-216ENST00000505225 SHROOM4Q9ULL8 1493 aa15.1■□□□□ 0.01
RERE-216ENST00000505225 ZCCHC6Q5VYS8 1495 aaKnown RBP15.08■□□□□ 0
RERE-216ENST00000505225 DCAF1Q9Y4B6 1507 aa15.07■□□□□ 0
RERE-216ENST00000505225 CC2D2AQ9P2K1 1620 aa14.97□□□□□ -0.01
RERE-216ENST00000505225 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
RERE-216ENST00000505225 SCRIBQ14160 1630 aa14.92□□□□□ -0.02
RERE-216ENST00000505225 EIF4G1Q04637 1599 aaKnown RBP14.9□□□□□ -0.02
RERE-216ENST00000505225 CECR2Q9BXF3 1484 aa14.85□□□□□ -0.03
RERE-216ENST00000505225 DNAJC5Q9H3Z4 198 aa14.34□□□□□ -0.11
RERE-216ENST00000505225 CUX2O14529 1486 aa14.32□□□□□ -0.12
RERE-216ENST00000505225 NCAPD3P42695 1498 aa14.3□□□□□ -0.12
RERE-216ENST00000505225 HMGXB3Q12766 1538 aa14.29□□□□□ -0.12
RERE-216ENST00000505225 SMARCA4P51532 1647 aa14.27□□□□□ -0.12
RERE-216ENST00000505225 ATAD2BQ9ULI0 1458 aa14.23□□□□□ -0.13
RERE-216ENST00000505225 SMARCA2P51531 1590 aa14.22□□□□□ -0.13
RERE-216ENST00000505225 THOC2Q8NI27 1593 aaKnown RBP14.2□□□□□ -0.14
RERE-216ENST00000505225 PEG3Q9GZU2 1588 aa14.19□□□□□ -0.14
RERE-216ENST00000505225 ERCC6Q03468 1493 aa14.17□□□□□ -0.14
RERE-216ENST00000505225 NESP48681 1621 aa14.13□□□□□ -0.15
RERE-216ENST00000505225 BAZ1AQ9NRL2 1556 aaPredicted RBP14.12□□□□□ -0.15
RERE-216ENST00000505225 KIF21AQ7Z4S6 1674 aa14.1□□□□□ -0.15
RERE-216ENST00000505225 LAMC3Q9Y6N6 1575 aa14.08□□□□□ -0.16
RERE-216ENST00000505225 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
RERE-216ENST00000505225 MROH2BQ7Z745 1585 aa13.98□□□□□ -0.17
RERE-216ENST00000505225 WDR62O43379 1518 aa13.89□□□□□ -0.19
RERE-216ENST00000505225 WIZO95785 1651 aa13.85□□□□□ -0.19
RERE-216ENST00000505225 PDS5BQ9NTI5 1447 aa13.84□□□□□ -0.19
RERE-216ENST00000505225 MRC2Q9UBG0 1479 aa13.82□□□□□ -0.2
RERE-216ENST00000505225 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
RERE-216ENST00000505225 CADPSQ9ULU8 1353 aa13.77□□□□□ -0.21
RERE-216ENST00000505225 CEP164Q9UPV0 1460 aa13.72□□□□□ -0.21
RERE-216ENST00000505225 CFTRP13569 1480 aa13.67□□□□□ -0.22
RERE-216ENST00000505225 FANCD2Q9BXW9 1451 aa13.67□□□□□ -0.22
RERE-216ENST00000505225 TOP2AP11388 1531 aaKnown RBP13.66□□□□□ -0.22
RERE-216ENST00000505225 URB2Q14146 1524 aaKnown RBP13.64□□□□□ -0.23
RERE-216ENST00000505225 RSF1Q96T23 1441 aaPredicted RBP13.56□□□□□ -0.24
RERE-216ENST00000505225 RIMBP3CA6NJZ7 1639 aa13.54□□□□□ -0.24
RERE-216ENST00000505225 RIMBP3BA6NNM3 1639 aa13.54□□□□□ -0.24
RERE-216ENST00000505225 RIMBP3Q9UFD9 1639 aa13.54□□□□□ -0.24
RERE-216ENST00000505225 TRIM41Q8WV44 630 aa13.52□□□□□ -0.25
RERE-216ENST00000505225 EIF4G3O43432 1585 aaKnown RBP13.49□□□□□ -0.25
RERE-216ENST00000505225 CHD1O14646 1710 aa13.46□□□□□ -0.25
RERE-216ENST00000505225 ZNF608Q9ULD9 1512 aaPredicted RBP13.45□□□□□ -0.26
RERE-216ENST00000505225 IFT140Q96RY7 1462 aa13.44□□□□□ -0.26
RERE-216ENST00000505225 ARHGEF11O15085 1522 aa13.44□□□□□ -0.26
RERE-216ENST00000505225 TOPBP1Q92547 1522 aa13.44□□□□□ -0.26
RERE-216ENST00000505225 TARBP1Q13395 1621 aaKnown RBP13.43□□□□□ -0.26
RERE-216ENST00000505225 DNMBPQ6XZF7 1577 aa13.42□□□□□ -0.26
RERE-216ENST00000505225 CCDC88BA6NC98 1476 aa13.41□□□□□ -0.26
RERE-216ENST00000505225 OSCARQ8IYS5 282 aa13.39□□□□□ -0.27
RERE-216ENST00000505225 ABCC8Q09428 1581 aa13.34□□□□□ -0.27
RERE-216ENST00000505225 WDR97A6NE52 1622 aa13.31□□□□□ -0.28
RERE-216ENST00000505225 ARAP1Q96P48 1450 aa13.29□□□□□ -0.28
RERE-216ENST00000505225 POLA1P09884 1462 aaPredicted RBP13.29□□□□□ -0.28
RERE-216ENST00000505225 CLASP1Q7Z460 1538 aa13.27□□□□□ -0.29
RERE-216ENST00000505225 AQRO60306 1485 aaKnown RBP eCLIP13.23□□□□□ -0.293e-7■■■■■ 38.3
RERE-216ENST00000505225 PBRM1Q86U86 1689 aa13.21□□□□□ -0.29
RERE-216ENST00000505225 RAD54L2Q9Y4B4 1467 aa13.17□□□□□ -0.3
RERE-216ENST00000505225 CUX1P39880 1505 aa13.17□□□□□ -0.3
RERE-216ENST00000505225 SNAPC4Q5SXM2 1469 aa13.16□□□□□ -0.3
RERE-216ENST00000505225 FGD5Q6ZNL6 1462 aa13.16□□□□□ -0.3
RERE-216ENST00000505225 SYNJ1O43426 1573 aa13.15□□□□□ -0.3
RERE-216ENST00000505225 MAGI1Q96QZ7 1491 aaPredicted RBP13.15□□□□□ -0.3
RERE-216ENST00000505225 ABCA5Q8WWZ7 1642 aa13.14□□□□□ -0.31
RERE-216ENST00000505225 SOGA1O94964 1423 aa13.09□□□□□ -0.31
RERE-216ENST00000505225 SYNJ2O15056 1496 aa13.08□□□□□ -0.32
RERE-216ENST00000505225 GRIN2BQ13224 1484 aa13.08□□□□□ -0.32
RERE-216ENST00000505225 CYB5RLQ6IPT4 315 aa13.07□□□□□ -0.32
RERE-216ENST00000505225 TDRD9Q8NDG6 1382 aaKnown RBP13.07□□□□□ -0.32
RERE-216ENST00000505225 ABCA10Q8WWZ4 1543 aa13.03□□□□□ -0.32
RERE-216ENST00000505225 ADAMTS12P58397 1594 aa13.03□□□□□ -0.32
RERE-216ENST00000505225 SHROOM2Q13796 1616 aa13.02□□□□□ -0.32
RERE-216ENST00000505225 BIVM-ERCC5R4GMW8 1640 aa13.02□□□□□ -0.33
RERE-216ENST00000505225 ERCC6L2Q5T890 1561 aa13□□□□□ -0.33
RERE-216ENST00000505225 GAPVD1Q14C86 1478 aa12.99□□□□□ -0.33
RERE-216ENST00000505225 CEP170Q5SW79 1584 aa12.98□□□□□ -0.33
RERE-216ENST00000505225 KIF13AQ9H1H9 1805 aa12.98□□□□□ -0.33
RERE-216ENST00000505225 FBLN2P98095 1184 aa12.97□□□□□ -0.33
RERE-216ENST00000505225 GRIN2AQ12879 1464 aa12.95□□□□□ -0.34
RERE-216ENST00000505225 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
RERE-216ENST00000505225 NUP160Q12769 1436 aa12.93□□□□□ -0.34
RERE-216ENST00000505225 TRHP20396 242 aaPredicted RBP12.92□□□□□ -0.34
RERE-216ENST00000505225 CHMP7Q8WUX9 453 aaPredicted RBP12.89□□□□□ -0.35
RERE-216ENST00000505225 ERICH3Q5RHP9 1530 aa12.88□□□□□ -0.35
RERE-216ENST00000505225 RUSC2Q8N2Y8 1516 aa12.88□□□□□ -0.35
RERE-216ENST00000505225 CHIC1Q5VXU3 224 aa12.85□□□□□ -0.35
RERE-216ENST00000505225 WRNQ14191 1432 aaPredicted RBP eCLIP12.82□□□□□ -0.36
RERE-216ENST00000505225 FHAD1B1AJZ9 1412 aa12.81□□□□□ -0.36
RERE-216ENST00000505225 DIP2BQ9P265 1576 aa12.78□□□□□ -0.36
RERE-216ENST00000505225 ADCY10Q96PN6 1610 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms