RNA–Protein interactions for RNA: ENST00000505066.5

DDR1-256, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 4

Gene DDR1, Length 556 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-256	ENST00000505066	NISCH	Q9Y2I1	1504 aa		40.26	■■■■■ 4.03
DDR1-256	ENST00000505066	ABCC9	O60706	1549 aa		36.06	■■■■□ 3.36
DDR1-256	ENST00000505066	CCDC180	Q9P1Z9	1646 aa		36.01	■■■■□ 3.36
DDR1-256	ENST00000505066	RB1CC1	Q8TDY2	1594 aa		34.39	■■■■□ 3.1
DDR1-256	ENST00000505066	DCAF8L2	P0C7V8	631 aa		34.3	■■■■□ 3.08
DDR1-256	ENST00000505066	NACAD	O15069	1562 aa		34.15	■■■■□ 3.06
DDR1-256	ENST00000505066	MYO15B	Q96JP2	1530 aa		33.68	■■■□□ 2.98
DDR1-256	ENST00000505066	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.66	■■■□□ 2.98
DDR1-256	ENST00000505066	DNAJC5B	Q9UF47	199 aa		33.62	■■■□□ 2.97
DDR1-256	ENST00000505066	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.34	■■■□□ 2.93
DDR1-256	ENST00000505066	DCAF1	Q9Y4B6	1507 aa		33.26	■■■□□ 2.91
DDR1-256	ENST00000505066	UNC13A	Q9UPW8	1703 aa		33.2	■■■□□ 2.91
DDR1-256	ENST00000505066	BICRA	Q9NZM4	1560 aa		33.13	■■■□□ 2.89
DDR1-256	ENST00000505066	SHROOM4	Q9ULL8	1493 aa		32.97	■■■□□ 2.87
DDR1-256	ENST00000505066	SCRIB	Q14160	1630 aa		32.87	■■■□□ 2.85
DDR1-256	ENST00000505066	CECR2	Q9BXF3	1484 aa		32.52	■■■□□ 2.8
DDR1-256	ENST00000505066	CC2D2A	Q9P2K1	1620 aa		32.48	■■■□□ 2.79
DDR1-256	ENST00000505066	EIF4G1	Q04637	1599 aa	Known RBP	32.45	■■■□□ 2.78
DDR1-256	ENST00000505066	NCAPD3	P42695	1498 aa		31.52	■■■□□ 2.64
DDR1-256	ENST00000505066	SMARCA2	P51531	1590 aa		31.41	■■■□□ 2.62
DDR1-256	ENST00000505066	ATAD2B	Q9ULI0	1458 aa		31.4	■■■□□ 2.62
DDR1-256	ENST00000505066	SMARCA4	P51532	1647 aa		31.32	■■■□□ 2.6
DDR1-256	ENST00000505066	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	31.31	■■■□□ 2.6
DDR1-256	ENST00000505066	ERCC6	Q03468	1493 aa		31.31	■■■□□ 2.6
DDR1-256	ENST00000505066	HMGXB3	Q12766	1538 aa		31.26	■■■□□ 2.59
DDR1-256	ENST00000505066	BAZ1B	Q9UIG0	1483 aa	Known RBP	31.21	■■■□□ 2.59
DDR1-256	ENST00000505066	CUX2	O14529	1486 aa		31.1	■■■□□ 2.57
DDR1-256	ENST00000505066	DNAJC5	Q9H3Z4	198 aa		31.01	■■■□□ 2.55
DDR1-256	ENST00000505066	PEG3	Q9GZU2	1588 aa		31	■■■□□ 2.55
DDR1-256	ENST00000505066	MROH2B	Q7Z745	1585 aa		30.96	■■■□□ 2.55
DDR1-256	ENST00000505066	NES	P48681	1621 aa		30.9	■■■□□ 2.54
DDR1-256	ENST00000505066	LAMC3	Q9Y6N6	1575 aa		30.79	■■■□□ 2.52
DDR1-256	ENST00000505066	PDS5B	Q9NTI5	1447 aa		30.78	■■■□□ 2.52
DDR1-256	ENST00000505066	CADPS	Q9ULU8	1353 aa		30.65	■■■□□ 2.5
DDR1-256	ENST00000505066	WIZ	O95785	1651 aa		30.54	■■■□□ 2.48
DDR1-256	ENST00000505066	THOC2	Q8NI27	1593 aa	Known RBP	30.49	■■■□□ 2.47
DDR1-256	ENST00000505066	RSF1	Q96T23	1441 aa	Predicted RBP	30.43	■■■□□ 2.46
DDR1-256	ENST00000505066	KIF21A	Q7Z4S6	1674 aa		30.4	■■■□□ 2.46
DDR1-256	ENST00000505066	MRC2	Q9UBG0	1479 aa		30.39	■■■□□ 2.46
DDR1-256	ENST00000505066	CEP164	Q9UPV0	1460 aa		30.32	■■■□□ 2.44
DDR1-256	ENST00000505066	TOP2A	P11388	1531 aa	Known RBP	30.28	■■■□□ 2.44
DDR1-256	ENST00000505066	FANCD2	Q9BXW9	1451 aa		30.26	■■■□□ 2.44
DDR1-256	ENST00000505066	CFTR	P13569	1480 aa		30.23	■■■□□ 2.43
DDR1-256	ENST00000505066	WDR62	O43379	1518 aa		30.21	■■■□□ 2.43
DDR1-256	ENST00000505066	CCDC88B	A6NC98	1476 aa		29.94	■■■□□ 2.38
DDR1-256	ENST00000505066	URB2	Q14146	1524 aa	Known RBP	29.88	■■■□□ 2.37
DDR1-256	ENST00000505066	OSCAR	Q8IYS5	282 aa		29.86	■■■□□ 2.37
DDR1-256	ENST00000505066	TRIM41	Q8WV44	630 aa		29.81	■■■□□ 2.36
DDR1-256	ENST00000505066	ABCC8	Q09428	1581 aa		29.75	■■■□□ 2.35
DDR1-256	ENST00000505066	IFT140	Q96RY7	1462 aa		29.72	■■■□□ 2.35
DDR1-256	ENST00000505066	PRDM2	Q13029	1718 aa		29.71	■■■□□ 2.35
DDR1-256	ENST00000505066	TOPBP1	Q92547	1522 aa		29.64	■■■□□ 2.34
DDR1-256	ENST00000505066	DNMBP	Q6XZF7	1577 aa		29.54	■■■□□ 2.32
DDR1-256	ENST00000505066	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.5	■■■□□ 2.31
DDR1-256	ENST00000505066	FBLN2	P98095	1184 aa		29.4	■■■□□ 2.3
DDR1-256	ENST00000505066	SUPT5H	O00267	1087 aa	Known RBP	29.39	■■■□□ 2.3
DDR1-256	ENST00000505066	SOGA1	O94964	1423 aa		29.34	■■■□□ 2.29
DDR1-256	ENST00000505066	AQR	O60306	1485 aa	Known RBP eCLIP	29.34	■■■□□ 2.29	2e-7	■■■■■ 31.6
DDR1-256	ENST00000505066	POLA1	P09884	1462 aa	Predicted RBP	29.34	■■■□□ 2.29
DDR1-256	ENST00000505066	EIF4G3	O43432	1585 aa	Known RBP	29.33	■■■□□ 2.29
DDR1-256	ENST00000505066	TDRD9	Q8NDG6	1382 aa	Known RBP	29.24	■■■□□ 2.27
DDR1-256	ENST00000505066	TARBP1	Q13395	1621 aa	Known RBP	29.23	■■■□□ 2.27
DDR1-256	ENST00000505066	RAD54L2	Q9Y4B4	1467 aa		29.22	■■■□□ 2.27
DDR1-256	ENST00000505066	FGD5	Q6ZNL6	1462 aa		29.18	■■■□□ 2.26
DDR1-256	ENST00000505066	CHMP7	Q8WUX9	453 aa	Predicted RBP	29.18	■■■□□ 2.26
DDR1-256	ENST00000505066	RIMBP3C	A6NJZ7	1639 aa		29.14	■■■□□ 2.26
DDR1-256	ENST00000505066	RIMBP3B	A6NNM3	1639 aa		29.14	■■■□□ 2.26
DDR1-256	ENST00000505066	RIMBP3	Q9UFD9	1639 aa		29.14	■■■□□ 2.26
DDR1-256	ENST00000505066	ARHGEF11	O15085	1522 aa		29.14	■■■□□ 2.25
DDR1-256	ENST00000505066	CYB5RL	Q6IPT4	315 aa		29.12	■■■□□ 2.25
DDR1-256	ENST00000505066	WDR97	A6NE52	1622 aa		29.1	■■■□□ 2.25
DDR1-256	ENST00000505066	CUX1	P39880	1505 aa		29.09	■■■□□ 2.25
DDR1-256	ENST00000505066	GRIN2B	Q13224	1484 aa		29.06	■■■□□ 2.24
DDR1-256	ENST00000505066	SNAPC4	Q5SXM2	1469 aa		29.04	■■■□□ 2.24
DDR1-256	ENST00000505066	MAGI1	Q96QZ7	1491 aa	Predicted RBP	29.03	■■■□□ 2.24
DDR1-256	ENST00000505066	CHD1	O14646	1710 aa		29.01	■■■□□ 2.23
DDR1-256	ENST00000505066	GAPVD1	Q14C86	1478 aa		28.94	■■■□□ 2.22
DDR1-256	ENST00000505066	SYNJ2	O15056	1496 aa		28.92	■■■□□ 2.22
DDR1-256	ENST00000505066	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.92	■■■□□ 2.22
DDR1-256	ENST00000505066	SYNJ1	O43426	1573 aa		28.92	■■■□□ 2.22
DDR1-256	ENST00000505066	TRH	P20396	242 aa	Predicted RBP	28.9	■■■□□ 2.22
DDR1-256	ENST00000505066	ABCA10	Q8WWZ4	1543 aa		28.86	■■■□□ 2.21
DDR1-256	ENST00000505066	ARAP1	Q96P48	1450 aa		28.82	■■■□□ 2.2
DDR1-256	ENST00000505066	CLASP1	Q7Z460	1538 aa		28.74	■■■□□ 2.19
DDR1-256	ENST00000505066	PBRM1	Q86U86	1689 aa		28.7	■■■□□ 2.19
DDR1-256	ENST00000505066	ABCA5	Q8WWZ7	1642 aa		28.69	■■■□□ 2.18
DDR1-256	ENST00000505066	TOP2B	Q02880	1626 aa		28.68	■■■□□ 2.18
DDR1-256	ENST00000505066	FHAD1	B1AJZ9	1412 aa		28.61	■■■□□ 2.17
DDR1-256	ENST00000505066	GRIN2A	Q12879	1464 aa		28.61	■■■□□ 2.17
DDR1-256	ENST00000505066	BIVM-ERCC5	R4GMW8	1640 aa		28.6	■■■□□ 2.17
DDR1-256	ENST00000505066	ERICH3	Q5RHP9	1530 aa		28.53	■■■□□ 2.16
DDR1-256	ENST00000505066	ADAMTS12	P58397	1594 aa		28.51	■■■□□ 2.15
DDR1-256	ENST00000505066	NUP160	Q12769	1436 aa		28.47	■■■□□ 2.15
DDR1-256	ENST00000505066	CEP170	Q5SW79	1584 aa		28.38	■■■□□ 2.13
DDR1-256	ENST00000505066	JPH4	Q96JJ6	628 aa		28.36	■■■□□ 2.13
DDR1-256	ENST00000505066	KIF27	Q86VH2	1401 aa		28.34	■■■□□ 2.13
DDR1-256	ENST00000505066	PRG4	Q92954	1404 aa	Predicted RBP	28.32	■■■□□ 2.12
DDR1-256	ENST00000505066	NPM1	P06748	294 aa	Known RBP eCLIP	28.29	■■■□□ 2.12
DDR1-256	ENST00000505066	ERCC6L2	Q5T890	1561 aa		28.24	■■■□□ 2.11
DDR1-256	ENST00000505066	SHROOM2	Q13796	1616 aa		28.22	■■■□□ 2.11

Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms