RNA–Protein interactions for RNA: ENST00000504634.5

NEDD9-209, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 745 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-209ENST00000504634 NISCHQ9Y2I1 1504 aa30.37■■■□□ 2.45
NEDD9-209ENST00000504634 ABCC9O60706 1549 aa27.53■■■□□ 2
NEDD9-209ENST00000504634 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
NEDD9-209ENST00000504634 RB1CC1Q8TDY2 1594 aa26.08■■□□□ 1.77
NEDD9-209ENST00000504634 DNAJC5BQ9UF47 199 aa26.04■■□□□ 1.76
NEDD9-209ENST00000504634 DCAF8L2P0C7V8 631 aa25.89■■□□□ 1.74
NEDD9-209ENST00000504634 NACADO15069 1562 aa25.86■■□□□ 1.73
NEDD9-209ENST00000504634 PABPN1Q86U42 306 aaKnown RBP eCLIP25.67■■□□□ 1.7
NEDD9-209ENST00000504634 MYO15BQ96JP2 1530 aa25.42■■□□□ 1.66
NEDD9-209ENST00000504634 UNC13AQ9UPW8 1703 aa25.31■■□□□ 1.64
NEDD9-209ENST00000504634 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
NEDD9-209ENST00000504634 ZCCHC6Q5VYS8 1495 aaKnown RBP25.12■■□□□ 1.61
NEDD9-209ENST00000504634 DCAF1Q9Y4B6 1507 aa25.03■■□□□ 1.6
NEDD9-209ENST00000504634 SHROOM4Q9ULL8 1493 aa24.96■■□□□ 1.59
NEDD9-209ENST00000504634 SCRIBQ14160 1630 aa24.88■■□□□ 1.57
NEDD9-209ENST00000504634 CECR2Q9BXF3 1484 aa24.83■■□□□ 1.56
NEDD9-209ENST00000504634 CC2D2AQ9P2K1 1620 aa24.79■■□□□ 1.56
NEDD9-209ENST00000504634 EIF4G1Q04637 1599 aaKnown RBP24.71■■□□□ 1.55
NEDD9-209ENST00000504634 DNAJC5Q9H3Z4 198 aa24.44■■□□□ 1.5
NEDD9-209ENST00000504634 NCAPD3P42695 1498 aa23.9■■□□□ 1.42
NEDD9-209ENST00000504634 ERCC6Q03468 1493 aa23.83■■□□□ 1.41
NEDD9-209ENST00000504634 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
NEDD9-209ENST00000504634 CUX2O14529 1486 aa23.77■■□□□ 1.4
NEDD9-209ENST00000504634 SMARCA2P51531 1590 aa23.72■■□□□ 1.39
NEDD9-209ENST00000504634 SMARCA4P51532 1647 aa23.69■■□□□ 1.38
NEDD9-209ENST00000504634 HMGXB3Q12766 1538 aa23.67■■□□□ 1.38
NEDD9-209ENST00000504634 BAZ1BQ9UIG0 1483 aaKnown RBP23.59■■□□□ 1.37
NEDD9-209ENST00000504634 BAZ1AQ9NRL2 1556 aaPredicted RBP23.58■■□□□ 1.37
NEDD9-209ENST00000504634 NESP48681 1621 aa23.57■■□□□ 1.36
NEDD9-209ENST00000504634 PEG3Q9GZU2 1588 aa23.43■■□□□ 1.34
NEDD9-209ENST00000504634 MROH2BQ7Z745 1585 aa23.4■■□□□ 1.34
NEDD9-209ENST00000504634 LAMC3Q9Y6N6 1575 aa23.35■■□□□ 1.33
NEDD9-209ENST00000504634 PDS5BQ9NTI5 1447 aa23.32■■□□□ 1.32
NEDD9-209ENST00000504634 THOC2Q8NI27 1593 aaKnown RBP23.29■■□□□ 1.32
NEDD9-209ENST00000504634 CADPSQ9ULU8 1353 aa23.21■■□□□ 1.31
NEDD9-209ENST00000504634 KIF21AQ7Z4S6 1674 aa23.16■■□□□ 1.3
NEDD9-209ENST00000504634 MRC2Q9UBG0 1479 aa23.08■■□□□ 1.29
NEDD9-209ENST00000504634 WIZO95785 1651 aa23.06■■□□□ 1.28
NEDD9-209ENST00000504634 TRIM41Q8WV44 630 aa22.99■■□□□ 1.27
NEDD9-209ENST00000504634 WDR62O43379 1518 aa22.98■■□□□ 1.27
NEDD9-209ENST00000504634 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
NEDD9-209ENST00000504634 FANCD2Q9BXW9 1451 aa22.92■■□□□ 1.26
NEDD9-209ENST00000504634 RSF1Q96T23 1441 aaPredicted RBP22.89■■□□□ 1.25
NEDD9-209ENST00000504634 CFTRP13569 1480 aa22.87■■□□□ 1.25
NEDD9-209ENST00000504634 TOP2AP11388 1531 aaKnown RBP22.79■■□□□ 1.24
NEDD9-209ENST00000504634 OSCARQ8IYS5 282 aa22.75■■□□□ 1.23
NEDD9-209ENST00000504634 URB2Q14146 1524 aaKnown RBP22.72■■□□□ 1.23
NEDD9-209ENST00000504634 CCDC88BA6NC98 1476 aa22.57■■□□□ 1.2
NEDD9-209ENST00000504634 IFT140Q96RY7 1462 aa22.52■■□□□ 1.2
NEDD9-209ENST00000504634 ZNF608Q9ULD9 1512 aaPredicted RBP22.48■■□□□ 1.19
NEDD9-209ENST00000504634 TOPBP1Q92547 1522 aa22.45■■□□□ 1.18
NEDD9-209ENST00000504634 PRDM2Q13029 1718 aa22.45■■□□□ 1.18
NEDD9-209ENST00000504634 ABCC8Q09428 1581 aa22.42■■□□□ 1.18
NEDD9-209ENST00000504634 DNMBPQ6XZF7 1577 aa22.33■■□□□ 1.17
NEDD9-209ENST00000504634 RIMBP3CA6NJZ7 1639 aa22.33■■□□□ 1.17
NEDD9-209ENST00000504634 RIMBP3BA6NNM3 1639 aa22.33■■□□□ 1.17
NEDD9-209ENST00000504634 RIMBP3Q9UFD9 1639 aa22.33■■□□□ 1.17
NEDD9-209ENST00000504634 ARHGEF11O15085 1522 aa22.3■■□□□ 1.16
NEDD9-209ENST00000504634 EIF4G3O43432 1585 aaKnown RBP22.29■■□□□ 1.16
NEDD9-209ENST00000504634 AQRO60306 1485 aaKnown RBP eCLIP22.28■■□□□ 1.16
NEDD9-209ENST00000504634 FBLN2P98095 1184 aa22.28■■□□□ 1.16
NEDD9-209ENST00000504634 CYB5RLQ6IPT4 315 aa22.25■■□□□ 1.15
NEDD9-209ENST00000504634 POLA1P09884 1462 aaPredicted RBP22.22■■□□□ 1.15
NEDD9-209ENST00000504634 TARBP1Q13395 1621 aaKnown RBP22.2■■□□□ 1.14
NEDD9-209ENST00000504634 RAD54L2Q9Y4B4 1467 aa22.15■■□□□ 1.14
NEDD9-209ENST00000504634 SOGA1O94964 1423 aa22.15■■□□□ 1.14
NEDD9-209ENST00000504634 TDRD9Q8NDG6 1382 aaKnown RBP22.15■■□□□ 1.14
NEDD9-209ENST00000504634 CHD1O14646 1710 aa22.1■■□□□ 1.13
NEDD9-209ENST00000504634 TRHP20396 242 aaPredicted RBP22.09■■□□□ 1.13
NEDD9-209ENST00000504634 CHMP7Q8WUX9 453 aaPredicted RBP22.06■■□□□ 1.12
NEDD9-209ENST00000504634 FGD5Q6ZNL6 1462 aa22.06■■□□□ 1.12
NEDD9-209ENST00000504634 ARAP1Q96P48 1450 aa22.06■■□□□ 1.12
NEDD9-209ENST00000504634 SNAPC4Q5SXM2 1469 aa22.04■■□□□ 1.12
NEDD9-209ENST00000504634 CUX1P39880 1505 aa21.99■■□□□ 1.11
NEDD9-209ENST00000504634 WDR97A6NE52 1622 aa21.97■■□□□ 1.11
NEDD9-209ENST00000504634 GRIN2BQ13224 1484 aa21.96■■□□□ 1.11
NEDD9-209ENST00000504634 MAGI1Q96QZ7 1491 aaPredicted RBP21.96■■□□□ 1.11
NEDD9-209ENST00000504634 SYNJ1O43426 1573 aa21.91■■□□□ 1.1
NEDD9-209ENST00000504634 SYNJ2O15056 1496 aa21.9■■□□□ 1.1
NEDD9-209ENST00000504634 CLASP1Q7Z460 1538 aa21.9■■□□□ 1.1
NEDD9-209ENST00000504634 SUPT5HO00267 1087 aaKnown RBP21.87■■□□□ 1.09
NEDD9-209ENST00000504634 GAPVD1Q14C86 1478 aa21.87■■□□□ 1.09
NEDD9-209ENST00000504634 ABCA10Q8WWZ4 1543 aa21.79■■□□□ 1.08
NEDD9-209ENST00000504634 AEBP2Q6ZN18 517 aaPredicted RBP21.75■■□□□ 1.07
NEDD9-209ENST00000504634 PBRM1Q86U86 1689 aa21.73■■□□□ 1.07
NEDD9-209ENST00000504634 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
NEDD9-209ENST00000504634 ABCA5Q8WWZ7 1642 aa21.71■■□□□ 1.07
NEDD9-209ENST00000504634 GRIN2AQ12879 1464 aa21.66■■□□□ 1.06
NEDD9-209ENST00000504634 FHAD1B1AJZ9 1412 aa21.59■■□□□ 1.05
NEDD9-209ENST00000504634 NUP160Q12769 1436 aa21.59■■□□□ 1.05
NEDD9-209ENST00000504634 ADAMTS12P58397 1594 aa21.58■■□□□ 1.05
NEDD9-209ENST00000504634 TOP2BQ02880 1626 aa21.56■■□□□ 1.04
NEDD9-209ENST00000504634 ERCC6L2Q5T890 1561 aa21.56■■□□□ 1.04
NEDD9-209ENST00000504634 CEP170Q5SW79 1584 aa21.54■■□□□ 1.04
NEDD9-209ENST00000504634 BIVM-ERCC5R4GMW8 1640 aa21.53■■□□□ 1.04
NEDD9-209ENST00000504634 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
NEDD9-209ENST00000504634 JPH4Q96JJ6 628 aa21.45■■□□□ 1.02
NEDD9-209ENST00000504634 PRG4Q92954 1404 aaPredicted RBP21.45■■□□□ 1.02
NEDD9-209ENST00000504634 SHROOM2Q13796 1616 aa21.43■■□□□ 1.02
NEDD9-209ENST00000504634 NPM1P06748 294 aaKnown RBP eCLIP21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms