RNA–Protein interactions for RNA: ENST00000502870.1

HERC6-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 6, humanhuman

TSL 4

Gene HERC6, Length 557 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6-204ENST00000502870 NISCHQ9Y2I1 1504 aa46.06■■■■■ 4.96
HERC6-204ENST00000502870 ABCC9O60706 1549 aa42.26■■■■■ 4.36
HERC6-204ENST00000502870 CCDC180Q9P1Z9 1646 aa41.75■■■■■ 4.27
HERC6-204ENST00000502870 DNAJC5BQ9UF47 199 aa40.12■■■■■ 4.01
HERC6-204ENST00000502870 RB1CC1Q8TDY2 1594 aa40.05■■■■■ 4
HERC6-204ENST00000502870 NACADO15069 1562 aa39.59■■■■□ 3.93
HERC6-204ENST00000502870 PABPN1Q86U42 306 aaKnown RBP eCLIP39.17■■■■□ 3.86
HERC6-204ENST00000502870 DCAF8L2P0C7V8 631 aa39.13■■■■□ 3.85
HERC6-204ENST00000502870 UNC13AQ9UPW8 1703 aa39.1■■■■□ 3.85
HERC6-204ENST00000502870 MYO15BQ96JP2 1530 aa38.84■■■■□ 3.81
HERC6-204ENST00000502870 BICRAQ9NZM4 1560 aa38.79■■■■□ 3.8
HERC6-204ENST00000502870 SHROOM4Q9ULL8 1493 aa38.37■■■■□ 3.73
HERC6-204ENST00000502870 CC2D2AQ9P2K1 1620 aa38.2■■■■□ 3.7
HERC6-204ENST00000502870 CECR2Q9BXF3 1484 aa38.18■■■■□ 3.7
HERC6-204ENST00000502870 DCAF1Q9Y4B6 1507 aa38.07■■■■□ 3.68
HERC6-204ENST00000502870 ZCCHC6Q5VYS8 1495 aaKnown RBP38.03■■■■□ 3.68
HERC6-204ENST00000502870 EIF4G1Q04637 1599 aaKnown RBP37.95■■■■□ 3.67
HERC6-204ENST00000502870 SCRIBQ14160 1630 aa37.89■■■■□ 3.66
HERC6-204ENST00000502870 DNAJC5Q9H3Z4 198 aa37.47■■■■□ 3.59
HERC6-204ENST00000502870 CUX2O14529 1486 aa36.81■■■■□ 3.48
HERC6-204ENST00000502870 ERCC6Q03468 1493 aa36.62■■■■□ 3.45
HERC6-204ENST00000502870 NCAPD3P42695 1498 aa36.5■■■■□ 3.43
HERC6-204ENST00000502870 ATAD2BQ9ULI0 1458 aa36.27■■■■□ 3.4
HERC6-204ENST00000502870 HMGXB3Q12766 1538 aa36.23■■■■□ 3.39
HERC6-204ENST00000502870 SMARCA2P51531 1590 aa36.23■■■■□ 3.39
HERC6-204ENST00000502870 SMARCA4P51532 1647 aa36.11■■■■□ 3.37
HERC6-204ENST00000502870 NESP48681 1621 aa36.08■■■■□ 3.37
HERC6-204ENST00000502870 BAZ1BQ9UIG0 1483 aaKnown RBP35.94■■■■□ 3.34
HERC6-204ENST00000502870 THOC2Q8NI27 1593 aaKnown RBP35.93■■■■□ 3.34
HERC6-204ENST00000502870 BAZ1AQ9NRL2 1556 aaPredicted RBP35.86■■■■□ 3.33
HERC6-204ENST00000502870 LAMC3Q9Y6N6 1575 aa35.85■■■■□ 3.33
HERC6-204ENST00000502870 PEG3Q9GZU2 1588 aa35.77■■■■□ 3.32
HERC6-204ENST00000502870 KIF21AQ7Z4S6 1674 aa35.68■■■■□ 3.3
HERC6-204ENST00000502870 PDS5BQ9NTI5 1447 aa35.66■■■■□ 3.3
HERC6-204ENST00000502870 TRIM41Q8WV44 630 aa35.54■■■■□ 3.28
HERC6-204ENST00000502870 MROH2BQ7Z745 1585 aa35.43■■■■□ 3.26
HERC6-204ENST00000502870 MRC2Q9UBG0 1479 aa35.37■■■■□ 3.25
HERC6-204ENST00000502870 CADPSQ9ULU8 1353 aa35.35■■■■□ 3.25
HERC6-204ENST00000502870 WDR62O43379 1518 aa35.31■■■■□ 3.24
HERC6-204ENST00000502870 CEP164Q9UPV0 1460 aa35.1■■■■□ 3.21
HERC6-204ENST00000502870 WIZO95785 1651 aa35.01■■■■□ 3.19
HERC6-204ENST00000502870 OSCARQ8IYS5 282 aa34.97■■■■□ 3.19
HERC6-204ENST00000502870 FANCD2Q9BXW9 1451 aa34.97■■■■□ 3.19
HERC6-204ENST00000502870 CFTRP13569 1480 aa34.81■■■■□ 3.16
HERC6-204ENST00000502870 URB2Q14146 1524 aaKnown RBP34.68■■■■□ 3.14
HERC6-204ENST00000502870 RIMBP3CA6NJZ7 1639 aa34.59■■■■□ 3.13
HERC6-204ENST00000502870 RIMBP3BA6NNM3 1639 aa34.59■■■■□ 3.13
HERC6-204ENST00000502870 RIMBP3Q9UFD9 1639 aa34.59■■■■□ 3.13
HERC6-204ENST00000502870 TOP2AP11388 1531 aaKnown RBP34.56■■■■□ 3.12
HERC6-204ENST00000502870 PRDM2Q13029 1718 aa34.54■■■■□ 3.12
HERC6-204ENST00000502870 RSF1Q96T23 1441 aaPredicted RBP34.45■■■■□ 3.11
HERC6-204ENST00000502870 IFT140Q96RY7 1462 aa34.43■■■■□ 3.1
HERC6-204ENST00000502870 ARHGEF11O15085 1522 aa34.4■■■■□ 3.1
HERC6-204ENST00000502870 ZNF608Q9ULD9 1512 aaPredicted RBP34.34■■■■□ 3.09
HERC6-204ENST00000502870 TOPBP1Q92547 1522 aa34.22■■■■□ 3.07
HERC6-204ENST00000502870 EIF4G3O43432 1585 aaKnown RBP34.21■■■■□ 3.07
HERC6-204ENST00000502870 ABCC8Q09428 1581 aa34.2■■■■□ 3.07
HERC6-204ENST00000502870 CYB5RLQ6IPT4 315 aa34.14■■■■□ 3.06
HERC6-204ENST00000502870 CCDC88BA6NC98 1476 aa34.12■■■■□ 3.05
HERC6-204ENST00000502870 CHD1O14646 1710 aa34.1■■■■□ 3.05
HERC6-204ENST00000502870 DNMBPQ6XZF7 1577 aa34.08■■■■□ 3.05
HERC6-204ENST00000502870 TRHP20396 242 aaPredicted RBP34.03■■■■□ 3.04
HERC6-204ENST00000502870 ARAP1Q96P48 1450 aa33.98■■■■□ 3.03
HERC6-204ENST00000502870 TARBP1Q13395 1621 aaKnown RBP33.97■■■■□ 3.03
HERC6-204ENST00000502870 AQRO60306 1485 aaKnown RBP eCLIP33.95■■■■□ 3.03
HERC6-204ENST00000502870 FBLN2P98095 1184 aa33.91■■■■□ 3.02
HERC6-204ENST00000502870 POLA1P09884 1462 aaPredicted RBP33.82■■■■□ 3
HERC6-204ENST00000502870 WDR97A6NE52 1622 aa33.7■■■□□ 2.99
HERC6-204ENST00000502870 RAD54L2Q9Y4B4 1467 aa33.66■■■□□ 2.98
HERC6-204ENST00000502870 CLASP1Q7Z460 1538 aa33.65■■■□□ 2.98
HERC6-204ENST00000502870 SOGA1O94964 1423 aa33.65■■■□□ 2.98
HERC6-204ENST00000502870 SYNJ1O43426 1573 aa33.64■■■□□ 2.98
HERC6-204ENST00000502870 TDRD9Q8NDG6 1382 aaKnown RBP33.63■■■□□ 2.97
HERC6-204ENST00000502870 SNAPC4Q5SXM2 1469 aa33.63■■■□□ 2.97
HERC6-204ENST00000502870 AEBP2Q6ZN18 517 aaPredicted RBP33.6■■■□□ 2.97
HERC6-204ENST00000502870 MAGI1Q96QZ7 1491 aaPredicted RBP33.57■■■□□ 2.97
HERC6-204ENST00000502870 CHMP7Q8WUX9 453 aaPredicted RBP33.57■■■□□ 2.96
HERC6-204ENST00000502870 FGD5Q6ZNL6 1462 aa33.51■■■□□ 2.96
HERC6-204ENST00000502870 GRIN2BQ13224 1484 aa33.48■■■□□ 2.95
HERC6-204ENST00000502870 SYNJ2O15056 1496 aa33.45■■■□□ 2.95
HERC6-204ENST00000502870 CUX1P39880 1505 aa33.35■■■□□ 2.93
HERC6-204ENST00000502870 GAPVD1Q14C86 1478 aa33.35■■■□□ 2.93
HERC6-204ENST00000502870 PBRM1Q86U86 1689 aa33.34■■■□□ 2.93
HERC6-204ENST00000502870 ABCA5Q8WWZ7 1642 aa33.14■■■□□ 2.9
HERC6-204ENST00000502870 ABCA10Q8WWZ4 1543 aa33.12■■■□□ 2.89
HERC6-204ENST00000502870 GRIN2AQ12879 1464 aa33.04■■■□□ 2.88
HERC6-204ENST00000502870 ERCC6L2Q5T890 1561 aa33■■■□□ 2.87
HERC6-204ENST00000502870 CEP170Q5SW79 1584 aa32.98■■■□□ 2.87
HERC6-204ENST00000502870 ADAMTS12P58397 1594 aa32.95■■■□□ 2.86
HERC6-204ENST00000502870 NUP160Q12769 1436 aa32.94■■■□□ 2.86
HERC6-204ENST00000502870 SHROOM2Q13796 1616 aa32.91■■■□□ 2.86
HERC6-204ENST00000502870 WRNQ14191 1432 aaPredicted RBP eCLIP32.86■■■□□ 2.85
HERC6-204ENST00000502870 KIF13AQ9H1H9 1805 aa32.85■■■□□ 2.85
HERC6-204ENST00000502870 FHAD1B1AJZ9 1412 aa32.82■■■□□ 2.84
HERC6-204ENST00000502870 ERICH3Q5RHP9 1530 aa32.72■■■□□ 2.83
HERC6-204ENST00000502870 BIVM-ERCC5R4GMW8 1640 aa32.72■■■□□ 2.83
HERC6-204ENST00000502870 TOP2BQ02880 1626 aa32.69■■■□□ 2.82
HERC6-204ENST00000502870 PRG4Q92954 1404 aaPredicted RBP32.68■■■□□ 2.82
HERC6-204ENST00000502870 ABCC10Q5T3U5 1492 aa32.58■■■□□ 2.81
HERC6-204ENST00000502870 NPM1P06748 294 aaKnown RBP eCLIP32.57■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms