RNA–Protein interactions for RNA: ENST00000502415.5

POLR2J3-206, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 5

Gene POLR2J3, Length 769 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-206ENST00000502415 NISCHQ9Y2I1 1504 aa38.88■■■■□ 3.81
POLR2J3-206ENST00000502415 ABCC9O60706 1549 aa35.04■■■■□ 3.2
POLR2J3-206ENST00000502415 CCDC180Q9P1Z9 1646 aa34.95■■■■□ 3.18
POLR2J3-206ENST00000502415 RB1CC1Q8TDY2 1594 aa33.38■■■□□ 2.93
POLR2J3-206ENST00000502415 NACADO15069 1562 aa33.11■■■□□ 2.89
POLR2J3-206ENST00000502415 DCAF8L2P0C7V8 631 aa33.05■■■□□ 2.88
POLR2J3-206ENST00000502415 DNAJC5BQ9UF47 199 aa32.84■■■□□ 2.85
POLR2J3-206ENST00000502415 PABPN1Q86U42 306 aaKnown RBP eCLIP32.63■■■□□ 2.81
POLR2J3-206ENST00000502415 MYO15BQ96JP2 1530 aa32.59■■■□□ 2.81
POLR2J3-206ENST00000502415 UNC13AQ9UPW8 1703 aa32.45■■■□□ 2.78
POLR2J3-206ENST00000502415 BICRAQ9NZM4 1560 aa32.23■■■□□ 2.75
POLR2J3-206ENST00000502415 ZCCHC6Q5VYS8 1495 aaKnown RBP32.16■■■□□ 2.74
POLR2J3-206ENST00000502415 DCAF1Q9Y4B6 1507 aa32.12■■■□□ 2.73
POLR2J3-206ENST00000502415 SHROOM4Q9ULL8 1493 aa31.97■■■□□ 2.71
POLR2J3-206ENST00000502415 SCRIBQ14160 1630 aa31.82■■■□□ 2.68
POLR2J3-206ENST00000502415 CC2D2AQ9P2K1 1620 aa31.63■■■□□ 2.65
POLR2J3-206ENST00000502415 CECR2Q9BXF3 1484 aa31.61■■■□□ 2.65
POLR2J3-206ENST00000502415 EIF4G1Q04637 1599 aaKnown RBP31.54■■■□□ 2.64
POLR2J3-206ENST00000502415 NCAPD3P42695 1498 aa30.53■■■□□ 2.48
POLR2J3-206ENST00000502415 ATAD2BQ9ULI0 1458 aa30.4■■■□□ 2.46
POLR2J3-206ENST00000502415 SMARCA2P51531 1590 aa30.39■■■□□ 2.46
POLR2J3-206ENST00000502415 ERCC6Q03468 1493 aa30.38■■■□□ 2.45
POLR2J3-206ENST00000502415 DNAJC5Q9H3Z4 198 aa30.38■■■□□ 2.45
POLR2J3-206ENST00000502415 SMARCA4P51532 1647 aa30.33■■■□□ 2.45
POLR2J3-206ENST00000502415 CUX2O14529 1486 aa30.31■■■□□ 2.44
POLR2J3-206ENST00000502415 HMGXB3Q12766 1538 aa30.3■■■□□ 2.44
POLR2J3-206ENST00000502415 BAZ1AQ9NRL2 1556 aaPredicted RBP30.24■■■□□ 2.43
POLR2J3-206ENST00000502415 BAZ1BQ9UIG0 1483 aaKnown RBP30.17■■■□□ 2.42
POLR2J3-206ENST00000502415 PEG3Q9GZU2 1588 aa30.03■■■□□ 2.4
POLR2J3-206ENST00000502415 NESP48681 1621 aa30■■■□□ 2.39
POLR2J3-206ENST00000502415 MROH2BQ7Z745 1585 aa29.9■■■□□ 2.38
POLR2J3-206ENST00000502415 LAMC3Q9Y6N6 1575 aa29.9■■■□□ 2.38
POLR2J3-206ENST00000502415 PDS5BQ9NTI5 1447 aa29.79■■■□□ 2.36
POLR2J3-206ENST00000502415 THOC2Q8NI27 1593 aaKnown RBP29.72■■■□□ 2.35
POLR2J3-206ENST00000502415 CADPSQ9ULU8 1353 aa29.64■■■□□ 2.33
POLR2J3-206ENST00000502415 KIF21AQ7Z4S6 1674 aa29.63■■■□□ 2.33
POLR2J3-206ENST00000502415 WIZO95785 1651 aa29.55■■■□□ 2.32
POLR2J3-206ENST00000502415 MRC2Q9UBG0 1479 aa29.47■■■□□ 2.31
POLR2J3-206ENST00000502415 CEP164Q9UPV0 1460 aa29.36■■■□□ 2.29
POLR2J3-206ENST00000502415 WDR62O43379 1518 aa29.35■■■□□ 2.29
POLR2J3-206ENST00000502415 FANCD2Q9BXW9 1451 aa29.29■■■□□ 2.28
POLR2J3-206ENST00000502415 RSF1Q96T23 1441 aaPredicted RBP29.28■■■□□ 2.28
POLR2J3-206ENST00000502415 CFTRP13569 1480 aa29.23■■■□□ 2.27
POLR2J3-206ENST00000502415 TOP2AP11388 1531 aaKnown RBP29.22■■■□□ 2.27
POLR2J3-206ENST00000502415 TRIM41Q8WV44 630 aa29.08■■■□□ 2.25
POLR2J3-206ENST00000502415 OSCARQ8IYS5 282 aa28.98■■■□□ 2.23
POLR2J3-206ENST00000502415 URB2Q14146 1524 aaKnown RBP28.97■■■□□ 2.23
POLR2J3-206ENST00000502415 PRDM2Q13029 1718 aa28.93■■■□□ 2.22
POLR2J3-206ENST00000502415 CCDC88BA6NC98 1476 aa28.88■■■□□ 2.21
POLR2J3-206ENST00000502415 IFT140Q96RY7 1462 aa28.78■■■□□ 2.2
POLR2J3-206ENST00000502415 ABCC8Q09428 1581 aa28.75■■■□□ 2.19
POLR2J3-206ENST00000502415 TOPBP1Q92547 1522 aa28.69■■■□□ 2.18
POLR2J3-206ENST00000502415 ZNF608Q9ULD9 1512 aaPredicted RBP28.63■■■□□ 2.17
POLR2J3-206ENST00000502415 DNMBPQ6XZF7 1577 aa28.59■■■□□ 2.17
POLR2J3-206ENST00000502415 EIF4G3O43432 1585 aaKnown RBP28.5■■■□□ 2.15
POLR2J3-206ENST00000502415 RIMBP3CA6NJZ7 1639 aa28.47■■■□□ 2.15
POLR2J3-206ENST00000502415 RIMBP3BA6NNM3 1639 aa28.47■■■□□ 2.15
POLR2J3-206ENST00000502415 RIMBP3Q9UFD9 1639 aa28.47■■■□□ 2.15
POLR2J3-206ENST00000502415 AQRO60306 1485 aaKnown RBP eCLIP28.4■■■□□ 2.144e-8■■■■□ 22.5
POLR2J3-206ENST00000502415 FBLN2P98095 1184 aa28.4■■■□□ 2.14
POLR2J3-206ENST00000502415 TARBP1Q13395 1621 aaKnown RBP28.39■■■□□ 2.13
POLR2J3-206ENST00000502415 ARHGEF11O15085 1522 aa28.38■■■□□ 2.13
POLR2J3-206ENST00000502415 POLA1P09884 1462 aaPredicted RBP28.38■■■□□ 2.13
POLR2J3-206ENST00000502415 SOGA1O94964 1423 aa28.33■■■□□ 2.13
POLR2J3-206ENST00000502415 CHD1O14646 1710 aa28.29■■■□□ 2.12
POLR2J3-206ENST00000502415 CYB5RLQ6IPT4 315 aa28.28■■■□□ 2.12
POLR2J3-206ENST00000502415 RAD54L2Q9Y4B4 1467 aa28.26■■■□□ 2.11
POLR2J3-206ENST00000502415 TDRD9Q8NDG6 1382 aaKnown RBP28.24■■■□□ 2.11
POLR2J3-206ENST00000502415 WDR97A6NE52 1622 aa28.21■■■□□ 2.11
POLR2J3-206ENST00000502415 FGD5Q6ZNL6 1462 aa28.21■■■□□ 2.11
POLR2J3-206ENST00000502415 CHMP7Q8WUX9 453 aaPredicted RBP28.17■■■□□ 2.1
POLR2J3-206ENST00000502415 SNAPC4Q5SXM2 1469 aa28.13■■■□□ 2.09
POLR2J3-206ENST00000502415 CUX1P39880 1505 aa28.11■■■□□ 2.09
POLR2J3-206ENST00000502415 MAGI1Q96QZ7 1491 aaPredicted RBP28.1■■■□□ 2.09
POLR2J3-206ENST00000502415 GRIN2BQ13224 1484 aa28.09■■■□□ 2.09
POLR2J3-206ENST00000502415 TRHP20396 242 aaPredicted RBP28.09■■■□□ 2.09
POLR2J3-206ENST00000502415 ARAP1Q96P48 1450 aa28.07■■■□□ 2.08
POLR2J3-206ENST00000502415 SYNJ1O43426 1573 aa28.06■■■□□ 2.08
POLR2J3-206ENST00000502415 SUPT5HO00267 1087 aaKnown RBP28.05■■■□□ 2.08
POLR2J3-206ENST00000502415 SYNJ2O15056 1496 aa27.99■■■□□ 2.07
POLR2J3-206ENST00000502415 GAPVD1Q14C86 1478 aa27.96■■■□□ 2.07
POLR2J3-206ENST00000502415 CLASP1Q7Z460 1538 aa27.95■■■□□ 2.06
POLR2J3-206ENST00000502415 PBRM1Q86U86 1689 aa27.9■■■□□ 2.06
POLR2J3-206ENST00000502415 ABCA10Q8WWZ4 1543 aa27.89■■■□□ 2.06
POLR2J3-206ENST00000502415 WRNQ14191 1432 aaPredicted RBP eCLIP27.84■■■□□ 2.051e-6■■■■■ 58.5
POLR2J3-206ENST00000502415 ABCA5Q8WWZ7 1642 aa27.8■■■□□ 2.04
POLR2J3-206ENST00000502415 GRIN2AQ12879 1464 aa27.69■■■□□ 2.02
POLR2J3-206ENST00000502415 TOP2BQ02880 1626 aa27.68■■■□□ 2.02
POLR2J3-206ENST00000502415 BIVM-ERCC5R4GMW8 1640 aa27.66■■■□□ 2.02
POLR2J3-206ENST00000502415 ADAMTS12P58397 1594 aa27.62■■■□□ 2.01
POLR2J3-206ENST00000502415 FHAD1B1AJZ9 1412 aa27.62■■■□□ 2.01
POLR2J3-206ENST00000502415 NUP160Q12769 1436 aa27.57■■■□□ 2
POLR2J3-206ENST00000502415 ERICH3Q5RHP9 1530 aa27.57■■■□□ 2
POLR2J3-206ENST00000502415 CEP170Q5SW79 1584 aa27.53■■■□□ 2
POLR2J3-206ENST00000502415 ERCC6L2Q5T890 1561 aa27.45■■□□□ 1.99
POLR2J3-206ENST00000502415 SHROOM2Q13796 1616 aa27.42■■□□□ 1.98
POLR2J3-206ENST00000502415 AEBP2Q6ZN18 517 aaPredicted RBP27.42■■□□□ 1.98
POLR2J3-206ENST00000502415 JPH4Q96JJ6 628 aa27.38■■□□□ 1.97
POLR2J3-206ENST00000502415 PRG4Q92954 1404 aaPredicted RBP27.38■■□□□ 1.97
POLR2J3-206ENST00000502415 NPM1P06748 294 aaKnown RBP eCLIP27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms