RNA–Protein interactions for RNA: ENST00000502315.1

SH3RF1-202, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 4

Gene SH3RF1, Length 487 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-202ENST00000502315 NISCHQ9Y2I1 1504 aa17.95■□□□□ 0.46
SH3RF1-202ENST00000502315 AEBP2Q6ZN18 517 aaPredicted RBP17.04■□□□□ 0.32
SH3RF1-202ENST00000502315 CCDC180Q9P1Z9 1646 aa16.15■□□□□ 0.18
SH3RF1-202ENST00000502315 ABCC9O60706 1549 aa16.05■□□□□ 0.16
SH3RF1-202ENST00000502315 CHIC1Q5VXU3 224 aa15.76■□□□□ 0.11
SH3RF1-202ENST00000502315 RB1CC1Q8TDY2 1594 aa15.4■□□□□ 0.06
SH3RF1-202ENST00000502315 NACADO15069 1562 aa15.32■□□□□ 0.04
SH3RF1-202ENST00000502315 MYO15BQ96JP2 1530 aa15.2■□□□□ 0.02
SH3RF1-202ENST00000502315 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
SH3RF1-202ENST00000502315 DCAF8L2P0C7V8 631 aa15.06■□□□□ 0
SH3RF1-202ENST00000502315 DCAF1Q9Y4B6 1507 aa14.95□□□□□ -0.02
SH3RF1-202ENST00000502315 PABPN1Q86U42 306 aaKnown RBP eCLIP14.93□□□□□ -0.02
SH3RF1-202ENST00000502315 SHROOM4Q9ULL8 1493 aa14.89□□□□□ -0.03
SH3RF1-202ENST00000502315 UNC13AQ9UPW8 1703 aa14.89□□□□□ -0.03
SH3RF1-202ENST00000502315 BICRAQ9NZM4 1560 aa14.86□□□□□ -0.03
SH3RF1-202ENST00000502315 ZCCHC6Q5VYS8 1495 aaKnown RBP14.85□□□□□ -0.03
SH3RF1-202ENST00000502315 CECR2Q9BXF3 1484 aa14.55□□□□□ -0.08
SH3RF1-202ENST00000502315 CC2D2AQ9P2K1 1620 aa14.55□□□□□ -0.08
SH3RF1-202ENST00000502315 SCRIBQ14160 1630 aa14.54□□□□□ -0.08
SH3RF1-202ENST00000502315 EIF4G1Q04637 1599 aaKnown RBP14.53□□□□□ -0.08
SH3RF1-202ENST00000502315 SENP3Q9H4L4 574 aaPredicted RBP14.45□□□□□ -0.1
SH3RF1-202ENST00000502315 PHF23Q9BUL5 403 aaPredicted RBP14.29□□□□□ -0.12
SH3RF1-202ENST00000502315 NCAPD3P42695 1498 aa14.16□□□□□ -0.14
SH3RF1-202ENST00000502315 DNAJC5Q9H3Z4 198 aa14.06□□□□□ -0.16
SH3RF1-202ENST00000502315 SMARCA2P51531 1590 aa14.05□□□□□ -0.16
SH3RF1-202ENST00000502315 ATAD2BQ9ULI0 1458 aa14.04□□□□□ -0.16
SH3RF1-202ENST00000502315 CUX2O14529 1486 aa14.03□□□□□ -0.16
SH3RF1-202ENST00000502315 HMGXB3Q12766 1538 aa14.01□□□□□ -0.17
SH3RF1-202ENST00000502315 SMARCA4P51532 1647 aa13.96□□□□□ -0.17
SH3RF1-202ENST00000502315 BAZ1AQ9NRL2 1556 aaPredicted RBP13.96□□□□□ -0.18
SH3RF1-202ENST00000502315 ERCC6Q03468 1493 aa13.93□□□□□ -0.18
SH3RF1-202ENST00000502315 PEG3Q9GZU2 1588 aa13.93□□□□□ -0.18
SH3RF1-202ENST00000502315 BAZ1BQ9UIG0 1483 aaKnown RBP13.87□□□□□ -0.19
SH3RF1-202ENST00000502315 LAMC3Q9Y6N6 1575 aa13.82□□□□□ -0.2
SH3RF1-202ENST00000502315 PDS5BQ9NTI5 1447 aa13.78□□□□□ -0.2
SH3RF1-202ENST00000502315 NESP48681 1621 aa13.75□□□□□ -0.21
SH3RF1-202ENST00000502315 MROH2BQ7Z745 1585 aa13.75□□□□□ -0.21
SH3RF1-202ENST00000502315 CADPSQ9ULU8 1353 aa13.71□□□□□ -0.22
SH3RF1-202ENST00000502315 THOC2Q8NI27 1593 aaKnown RBP13.67□□□□□ -0.22
SH3RF1-202ENST00000502315 FOXD1Q16676 465 aa13.62□□□□□ -0.23
SH3RF1-202ENST00000502315 MRC2Q9UBG0 1479 aa13.58□□□□□ -0.24
SH3RF1-202ENST00000502315 KIF21AQ7Z4S6 1674 aa13.56□□□□□ -0.24
SH3RF1-202ENST00000502315 WDR62O43379 1518 aa13.54□□□□□ -0.24
SH3RF1-202ENST00000502315 WIZO95785 1651 aa13.53□□□□□ -0.24
SH3RF1-202ENST00000502315 CFTRP13569 1480 aa13.53□□□□□ -0.24
SH3RF1-202ENST00000502315 CEP164Q9UPV0 1460 aa13.51□□□□□ -0.25
SH3RF1-202ENST00000502315 RSF1Q96T23 1441 aaPredicted RBP13.5□□□□□ -0.25
SH3RF1-202ENST00000502315 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
SH3RF1-202ENST00000502315 TOP2AP11388 1531 aaKnown RBP13.45□□□□□ -0.26
SH3RF1-202ENST00000502315 OSCARQ8IYS5 282 aa13.39□□□□□ -0.27
SH3RF1-202ENST00000502315 ABCC8Q09428 1581 aa13.33□□□□□ -0.28
SH3RF1-202ENST00000502315 URB2Q14146 1524 aaKnown RBP13.33□□□□□ -0.28
SH3RF1-202ENST00000502315 PRDM2Q13029 1718 aa13.3□□□□□ -0.28
SH3RF1-202ENST00000502315 CCDC88BA6NC98 1476 aa13.29□□□□□ -0.28
SH3RF1-202ENST00000502315 IFT140Q96RY7 1462 aa13.29□□□□□ -0.28
SH3RF1-202ENST00000502315 TRIM41Q8WV44 630 aa13.25□□□□□ -0.29
SH3RF1-202ENST00000502315 TOPBP1Q92547 1522 aa13.21□□□□□ -0.29
SH3RF1-202ENST00000502315 DNMBPQ6XZF7 1577 aa13.17□□□□□ -0.3
SH3RF1-202ENST00000502315 POTEDQ86YR6 584 aa13.16□□□□□ -0.3
SH3RF1-202ENST00000502315 ZNF608Q9ULD9 1512 aaPredicted RBP13.14□□□□□ -0.31
SH3RF1-202ENST00000502315 WDR97A6NE52 1622 aa13.1□□□□□ -0.31
SH3RF1-202ENST00000502315 TARBP1Q13395 1621 aaKnown RBP13.09□□□□□ -0.31
SH3RF1-202ENST00000502315 EIF4G3O43432 1585 aaKnown RBP13.07□□□□□ -0.32
SH3RF1-202ENST00000502315 POLA1P09884 1462 aaPredicted RBP13.07□□□□□ -0.32
SH3RF1-202ENST00000502315 RIMBP3CA6NJZ7 1639 aa13.06□□□□□ -0.32
SH3RF1-202ENST00000502315 RIMBP3BA6NNM3 1639 aa13.06□□□□□ -0.32
SH3RF1-202ENST00000502315 RIMBP3Q9UFD9 1639 aa13.06□□□□□ -0.32
SH3RF1-202ENST00000502315 ARHGEF11O15085 1522 aa13.06□□□□□ -0.32
SH3RF1-202ENST00000502315 SOGA1O94964 1423 aa13.05□□□□□ -0.32
SH3RF1-202ENST00000502315 AQRO60306 1485 aaKnown RBP eCLIP13.04□□□□□ -0.32
SH3RF1-202ENST00000502315 MAGI1Q96QZ7 1491 aaPredicted RBP12.98□□□□□ -0.33
SH3RF1-202ENST00000502315 CYB5RLQ6IPT4 315 aa12.98□□□□□ -0.33
SH3RF1-202ENST00000502315 TDRD9Q8NDG6 1382 aaKnown RBP12.96□□□□□ -0.33
SH3RF1-202ENST00000502315 FBLN2P98095 1184 aa12.96□□□□□ -0.33
SH3RF1-202ENST00000502315 GRIN2BQ13224 1484 aa12.96□□□□□ -0.34
SH3RF1-202ENST00000502315 RAD54L2Q9Y4B4 1467 aa12.96□□□□□ -0.34
SH3RF1-202ENST00000502315 CHMP7Q8WUX9 453 aaPredicted RBP12.95□□□□□ -0.34
SH3RF1-202ENST00000502315 FGD5Q6ZNL6 1462 aa12.95□□□□□ -0.34
SH3RF1-202ENST00000502315 CHD1O14646 1710 aa12.94□□□□□ -0.34
SH3RF1-202ENST00000502315 CUX1P39880 1505 aa12.93□□□□□ -0.34
SH3RF1-202ENST00000502315 SYNJ2O15056 1496 aa12.92□□□□□ -0.34
SH3RF1-202ENST00000502315 SYNJ1O43426 1573 aa12.91□□□□□ -0.34
SH3RF1-202ENST00000502315 SNAPC4Q5SXM2 1469 aa12.91□□□□□ -0.34
SH3RF1-202ENST00000502315 ARAP1Q96P48 1450 aa12.91□□□□□ -0.34
SH3RF1-202ENST00000502315 CLASP1Q7Z460 1538 aa12.9□□□□□ -0.34
SH3RF1-202ENST00000502315 ABCA10Q8WWZ4 1543 aa12.88□□□□□ -0.35
SH3RF1-202ENST00000502315 GAPVD1Q14C86 1478 aa12.88□□□□□ -0.35
SH3RF1-202ENST00000502315 WRNQ14191 1432 aaPredicted RBP eCLIP12.85□□□□□ -0.35
SH3RF1-202ENST00000502315 TRHP20396 242 aaPredicted RBP12.83□□□□□ -0.36
SH3RF1-202ENST00000502315 ABCA5Q8WWZ7 1642 aa12.8□□□□□ -0.36
SH3RF1-202ENST00000502315 PBRM1Q86U86 1689 aa12.78□□□□□ -0.36
SH3RF1-202ENST00000502315 SUPT5HO00267 1087 aaKnown RBP12.76□□□□□ -0.37
SH3RF1-202ENST00000502315 MSH5O43196 834 aa12.76□□□□□ -0.37
SH3RF1-202ENST00000502315 TOP2BQ02880 1626 aa12.76□□□□□ -0.37
SH3RF1-202ENST00000502315 FHAD1B1AJZ9 1412 aa12.75□□□□□ -0.37
SH3RF1-202ENST00000502315 NUP160Q12769 1436 aa12.75□□□□□ -0.37
SH3RF1-202ENST00000502315 GRIN2AQ12879 1464 aa12.75□□□□□ -0.37
SH3RF1-202ENST00000502315 BIVM-ERCC5R4GMW8 1640 aa12.74□□□□□ -0.37
SH3RF1-202ENST00000502315 ERICH3Q5RHP9 1530 aa12.74□□□□□ -0.37
SH3RF1-202ENST00000502315 ADAMTS12P58397 1594 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms