RNA–Protein interactions for RNA: ENST00000498722.2

LMNA-217, Transcript of lamin A/C, humanhuman

TSL 2

Gene LMNA, Length 1,348 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-217ENST00000498722 NISCHQ9Y2I1 1504 aa38.79■■■■□ 3.8
LMNA-217ENST00000498722 CCDC180Q9P1Z9 1646 aa34.56■■■■□ 3.12
LMNA-217ENST00000498722 ABCC9O60706 1549 aa33.72■■■□□ 2.99
LMNA-217ENST00000498722 DCAF8L2P0C7V8 631 aa32.51■■■□□ 2.79
LMNA-217ENST00000498722 RB1CC1Q8TDY2 1594 aa32.47■■■□□ 2.79
LMNA-217ENST00000498722 NACADO15069 1562 aa32.4■■■□□ 2.78
LMNA-217ENST00000498722 ZCCHC6Q5VYS8 1495 aaKnown RBP32.32■■■□□ 2.76
LMNA-217ENST00000498722 MYO15BQ96JP2 1530 aa32.13■■■□□ 2.73
LMNA-217ENST00000498722 DCAF1Q9Y4B6 1507 aa32.05■■■□□ 2.72
LMNA-217ENST00000498722 UNC13AQ9UPW8 1703 aa31.87■■■□□ 2.69
LMNA-217ENST00000498722 SCRIBQ14160 1630 aa31.57■■■□□ 2.65
LMNA-217ENST00000498722 PABPN1Q86U42 306 aaKnown RBP eCLIP31.49■■■□□ 2.63
LMNA-217ENST00000498722 BICRAQ9NZM4 1560 aa31.43■■■□□ 2.62
LMNA-217ENST00000498722 SHROOM4Q9ULL8 1493 aa31.05■■■□□ 2.56
LMNA-217ENST00000498722 DNAJC5BQ9UF47 199 aa30.78■■■□□ 2.52
LMNA-217ENST00000498722 EIF4G1Q04637 1599 aaKnown RBP30.63■■■□□ 2.49
LMNA-217ENST00000498722 CC2D2AQ9P2K1 1620 aa30.52■■■□□ 2.48
LMNA-217ENST00000498722 CECR2Q9BXF3 1484 aa30.25■■■□□ 2.43
LMNA-217ENST00000498722 SMARCA4P51532 1647 aa30.16■■■□□ 2.42
LMNA-217ENST00000498722 BAZ1AQ9NRL2 1556 aaPredicted RBP30.1■■■□□ 2.41
LMNA-217ENST00000498722 MROH2BQ7Z745 1585 aa29.92■■■□□ 2.38
LMNA-217ENST00000498722 SMARCA2P51531 1590 aa29.91■■■□□ 2.38
LMNA-217ENST00000498722 ATAD2BQ9ULI0 1458 aa29.89■■■□□ 2.37
LMNA-217ENST00000498722 NCAPD3P42695 1498 aa29.83■■■□□ 2.37
LMNA-217ENST00000498722 PEG3Q9GZU2 1588 aa29.78■■■□□ 2.36
LMNA-217ENST00000498722 HMGXB3Q12766 1538 aa29.75■■■□□ 2.35
LMNA-217ENST00000498722 BAZ1BQ9UIG0 1483 aaKnown RBP29.72■■■□□ 2.35
LMNA-217ENST00000498722 WIZO95785 1651 aa29.69■■■□□ 2.34
LMNA-217ENST00000498722 RSF1Q96T23 1441 aaPredicted RBP29.56■■■□□ 2.32
LMNA-217ENST00000498722 TOP2AP11388 1531 aaKnown RBP29.31■■■□□ 2.28
LMNA-217ENST00000498722 NESP48681 1621 aa29.19■■■□□ 2.26
LMNA-217ENST00000498722 LAMC3Q9Y6N6 1575 aa29.13■■■□□ 2.25
LMNA-217ENST00000498722 ERCC6Q03468 1493 aa29.09■■■□□ 2.25
LMNA-217ENST00000498722 SUPT5HO00267 1087 aaKnown RBP28.98■■■□□ 2.23
LMNA-217ENST00000498722 CADPSQ9ULU8 1353 aa28.98■■■□□ 2.23
LMNA-217ENST00000498722 KIF21AQ7Z4S6 1674 aa28.96■■■□□ 2.23
LMNA-217ENST00000498722 CCDC88BA6NC98 1476 aa28.94■■■□□ 2.22
LMNA-217ENST00000498722 PDS5BQ9NTI5 1447 aa28.89■■■□□ 2.21
LMNA-217ENST00000498722 PRDM2Q13029 1718 aa28.86■■■□□ 2.21
LMNA-217ENST00000498722 CFTRP13569 1480 aa28.82■■■□□ 2.2
LMNA-217ENST00000498722 THOC2Q8NI27 1593 aaKnown RBP28.74■■■□□ 2.19
LMNA-217ENST00000498722 FANCD2Q9BXW9 1451 aa28.71■■■□□ 2.19
LMNA-217ENST00000498722 CEP164Q9UPV0 1460 aa28.69■■■□□ 2.18
LMNA-217ENST00000498722 CUX2O14529 1486 aa28.66■■■□□ 2.18
LMNA-217ENST00000498722 MRC2Q9UBG0 1479 aa28.61■■■□□ 2.17
LMNA-217ENST00000498722 WDR62O43379 1518 aa28.5■■■□□ 2.15
LMNA-217ENST00000498722 URB2Q14146 1524 aaKnown RBP28.41■■■□□ 2.14
LMNA-217ENST00000498722 DNAJC5Q9H3Z4 198 aa28.26■■■□□ 2.11
LMNA-217ENST00000498722 DNMBPQ6XZF7 1577 aa28.26■■■□□ 2.11
LMNA-217ENST00000498722 TOPBP1Q92547 1522 aa28.25■■■□□ 2.11
LMNA-217ENST00000498722 ABCC8Q09428 1581 aa28.24■■■□□ 2.11
LMNA-217ENST00000498722 CUX1P39880 1505 aa28.08■■■□□ 2.09
LMNA-217ENST00000498722 IFT140Q96RY7 1462 aa28.04■■■□□ 2.08
LMNA-217ENST00000498722 POLA1P09884 1462 aaPredicted RBP28.01■■■□□ 2.07
LMNA-217ENST00000498722 FGD5Q6ZNL6 1462 aa27.98■■■□□ 2.07
LMNA-217ENST00000498722 TARBP1Q13395 1621 aaKnown RBP27.96■■■□□ 2.07
LMNA-217ENST00000498722 ZNF608Q9ULD9 1512 aaPredicted RBP27.92■■■□□ 2.06
LMNA-217ENST00000498722 WRNQ14191 1432 aaPredicted RBP eCLIP27.92■■■□□ 2.065e-6■■□□□ 12.5
LMNA-217ENST00000498722 RAD54L2Q9Y4B4 1467 aa27.91■■■□□ 2.06
LMNA-217ENST00000498722 BIVM-ERCC5R4GMW8 1640 aa27.91■■■□□ 2.06
LMNA-217ENST00000498722 SOGA1O94964 1423 aa27.9■■■□□ 2.06
LMNA-217ENST00000498722 SYNJ1O43426 1573 aa27.9■■■□□ 2.06
LMNA-217ENST00000498722 EIF4G3O43432 1585 aaKnown RBP27.9■■■□□ 2.06
LMNA-217ENST00000498722 TOP2BQ02880 1626 aa27.88■■■□□ 2.05
LMNA-217ENST00000498722 WDR97A6NE52 1622 aa27.81■■■□□ 2.04
LMNA-217ENST00000498722 AQRO60306 1485 aaKnown RBP eCLIP27.78■■■□□ 2.045e-9■■■■■ 41.6
LMNA-217ENST00000498722 TDRD9Q8NDG6 1382 aaKnown RBP27.73■■■□□ 2.03
LMNA-217ENST00000498722 PBRM1Q86U86 1689 aa27.67■■■□□ 2.02
LMNA-217ENST00000498722 ABCA10Q8WWZ4 1543 aa27.67■■■□□ 2.02
LMNA-217ENST00000498722 ABCA5Q8WWZ7 1642 aa27.61■■■□□ 2.01
LMNA-217ENST00000498722 CHD1O14646 1710 aa27.61■■■□□ 2.01
LMNA-217ENST00000498722 GAPVD1Q14C86 1478 aa27.6■■■□□ 2.01
LMNA-217ENST00000498722 GRIN2BQ13224 1484 aa27.57■■■□□ 2
LMNA-217ENST00000498722 SNAPC4Q5SXM2 1469 aa27.55■■■□□ 2
LMNA-217ENST00000498722 FBLN2P98095 1184 aa27.5■■□□□ 1.99
LMNA-217ENST00000498722 OSCARQ8IYS5 282 aa27.49■■□□□ 1.99
LMNA-217ENST00000498722 MAGI1Q96QZ7 1491 aaPredicted RBP27.49■■□□□ 1.99
LMNA-217ENST00000498722 CHMP7Q8WUX9 453 aaPredicted RBP27.39■■□□□ 1.97
LMNA-217ENST00000498722 SYNJ2O15056 1496 aa27.38■■□□□ 1.97
LMNA-217ENST00000498722 ERICH3Q5RHP9 1530 aa27.37■■□□□ 1.97
LMNA-217ENST00000498722 ADAMTS12P58397 1594 aa27.36■■□□□ 1.97
LMNA-217ENST00000498722 TRIM41Q8WV44 630 aa27.34■■□□□ 1.97
LMNA-217ENST00000498722 KIF27Q86VH2 1401 aa27.33■■□□□ 1.97
LMNA-217ENST00000498722 FHAD1B1AJZ9 1412 aa27.25■■□□□ 1.95
LMNA-217ENST00000498722 GRIN2AQ12879 1464 aa27.22■■□□□ 1.95
LMNA-217ENST00000498722 CUL7Q14999 1698 aa27.21■■□□□ 1.95
LMNA-217ENST00000498722 CLASP1Q7Z460 1538 aa27.16■■□□□ 1.94
LMNA-217ENST00000498722 IGF1RP08069 1367 aa27.14■■□□□ 1.94
LMNA-217ENST00000498722 RIMBP3CA6NJZ7 1639 aa27.14■■□□□ 1.93
LMNA-217ENST00000498722 RIMBP3BA6NNM3 1639 aa27.14■■□□□ 1.93
LMNA-217ENST00000498722 RIMBP3Q9UFD9 1639 aa27.14■■□□□ 1.93
LMNA-217ENST00000498722 CEP170Q5SW79 1584 aa27.12■■□□□ 1.93
LMNA-217ENST00000498722 RUSC2Q8N2Y8 1516 aa27.11■■□□□ 1.93
LMNA-217ENST00000498722 ARHGEF11O15085 1522 aa27.08■■□□□ 1.93
LMNA-217ENST00000498722 NUP160Q12769 1436 aa27.04■■□□□ 1.92
LMNA-217ENST00000498722 CARMIL1Q5VZK9 1371 aa27.03■■□□□ 1.92
LMNA-217ENST00000498722 CHIC1Q5VXU3 224 aa27■■□□□ 1.91
LMNA-217ENST00000498722 SHROOM2Q13796 1616 aa26.9■■□□□ 1.9
LMNA-217ENST00000498722 RAPGEF2Q9Y4G8 1499 aa26.9■■□□□ 1.9
LMNA-217ENST00000498722 ARAP1Q96P48 1450 aa26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms