RNA–Protein interactions for RNA: ENST00000498043.6

CHRNA4-206, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 5

Gene CHRNA4, Length 2,052 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-206ENST00000498043 NISCHQ9Y2I1 1504 aa40.26■■■■■ 4.03
CHRNA4-206ENST00000498043 CCDC180Q9P1Z9 1646 aa35.09■■■■□ 3.21
CHRNA4-206ENST00000498043 ZCCHC6Q5VYS8 1495 aaKnown RBP33.86■■■■□ 3.01
CHRNA4-206ENST00000498043 DCAF8L2P0C7V8 631 aa33.28■■■□□ 2.92
CHRNA4-206ENST00000498043 DCAF1Q9Y4B6 1507 aa33.22■■■□□ 2.91
CHRNA4-206ENST00000498043 ABCC9O60706 1549 aa33.19■■■□□ 2.9
CHRNA4-206ENST00000498043 SHROOM4Q9ULL8 1493 aa33.01■■■□□ 2.87
CHRNA4-206ENST00000498043 MYO15BQ96JP2 1530 aa32.78■■■□□ 2.84
CHRNA4-206ENST00000498043 NACADO15069 1562 aa32.63■■■□□ 2.81
CHRNA4-206ENST00000498043 SCRIBQ14160 1630 aa32.38■■■□□ 2.77
CHRNA4-206ENST00000498043 RB1CC1Q8TDY2 1594 aa32.37■■■□□ 2.77
CHRNA4-206ENST00000498043 UNC13AQ9UPW8 1703 aa31.83■■■□□ 2.69
CHRNA4-206ENST00000498043 SUPT5HO00267 1087 aaKnown RBP31.73■■■□□ 2.67
CHRNA4-206ENST00000498043 BICRAQ9NZM4 1560 aa31.42■■■□□ 2.62
CHRNA4-206ENST00000498043 CECR2Q9BXF3 1484 aa31.32■■■□□ 2.6
CHRNA4-206ENST00000498043 PABPN1Q86U42 306 aaKnown RBP eCLIP31.29■■■□□ 2.6
CHRNA4-206ENST00000498043 RSF1Q96T23 1441 aaPredicted RBP31.25■■■□□ 2.59
CHRNA4-206ENST00000498043 MROH2BQ7Z745 1585 aa31.15■■■□□ 2.58
CHRNA4-206ENST00000498043 BAZ1AQ9NRL2 1556 aaPredicted RBP31.09■■■□□ 2.57
CHRNA4-206ENST00000498043 SMARCA4P51532 1647 aa30.98■■■□□ 2.55
CHRNA4-206ENST00000498043 WIZO95785 1651 aa30.94■■■□□ 2.54
CHRNA4-206ENST00000498043 TOP2AP11388 1531 aaKnown RBP30.57■■■□□ 2.48
CHRNA4-206ENST00000498043 PEG3Q9GZU2 1588 aa30.54■■■□□ 2.48
CHRNA4-206ENST00000498043 EIF4G1Q04637 1599 aaKnown RBP30.48■■■□□ 2.47
CHRNA4-206ENST00000498043 ATAD2BQ9ULI0 1458 aa30.41■■■□□ 2.46
CHRNA4-206ENST00000498043 SMARCA2P51531 1590 aa30.39■■■□□ 2.46
CHRNA4-206ENST00000498043 CHIC1Q5VXU3 224 aa30.34■■■□□ 2.45
CHRNA4-206ENST00000498043 BAZ1BQ9UIG0 1483 aaKnown RBP30.28■■■□□ 2.44
CHRNA4-206ENST00000498043 CCDC88BA6NC98 1476 aa30.24■■■□□ 2.43
CHRNA4-206ENST00000498043 HMGXB3Q12766 1538 aa30.1■■■□□ 2.41
CHRNA4-206ENST00000498043 NCAPD3P42695 1498 aa30.08■■■□□ 2.41
CHRNA4-206ENST00000498043 CC2D2AQ9P2K1 1620 aa30.03■■■□□ 2.4
CHRNA4-206ENST00000498043 TRIM41Q8WV44 630 aa29.77■■■□□ 2.36
CHRNA4-206ENST00000498043 ABCC8Q09428 1581 aa29.72■■■□□ 2.35
CHRNA4-206ENST00000498043 CFTRP13569 1480 aa29.47■■■□□ 2.31
CHRNA4-206ENST00000498043 WRNQ14191 1432 aaPredicted RBP eCLIP29.43■■■□□ 2.3
CHRNA4-206ENST00000498043 PRDM2Q13029 1718 aa29.42■■■□□ 2.3
CHRNA4-206ENST00000498043 SYNJ1O43426 1573 aa29.37■■■□□ 2.29
CHRNA4-206ENST00000498043 CADPSQ9ULU8 1353 aa29.34■■■□□ 2.29
CHRNA4-206ENST00000498043 FAM9AQ8IZU1 332 aaPredicted RBP29.31■■■□□ 2.28
CHRNA4-206ENST00000498043 DNAJC5BQ9UF47 199 aa29.25■■■□□ 2.27
CHRNA4-206ENST00000498043 LOC105371045A0A1W2PR82 267 aa29.23■■■□□ 2.27
CHRNA4-206ENST00000498043 TOP2BQ02880 1626 aa29.2■■■□□ 2.27
CHRNA4-206ENST00000498043 BIVM-ERCC5R4GMW8 1640 aa29.18■■■□□ 2.26
CHRNA4-206ENST00000498043 NESP48681 1621 aa29.17■■■□□ 2.26
CHRNA4-206ENST00000498043 CUX1P39880 1505 aa29.12■■■□□ 2.25
CHRNA4-206ENST00000498043 SOGA1O94964 1423 aa29.12■■■□□ 2.25
CHRNA4-206ENST00000498043 LAMC3Q9Y6N6 1575 aa29.11■■■□□ 2.25
CHRNA4-206ENST00000498043 FANCD2Q9BXW9 1451 aa29.07■■■□□ 2.24
CHRNA4-206ENST00000498043 RUSC2Q8N2Y8 1516 aa29.02■■■□□ 2.24
CHRNA4-206ENST00000498043 EHMT2Q96KQ7 1210 aa28.98■■■□□ 2.23
CHRNA4-206ENST00000498043 EEA1Q15075 1411 aa28.97■■■□□ 2.23
CHRNA4-206ENST00000498043 CEP164Q9UPV0 1460 aa28.89■■■□□ 2.22
CHRNA4-206ENST00000498043 KIF21AQ7Z4S6 1674 aa28.85■■■□□ 2.21
CHRNA4-206ENST00000498043 PDS5BQ9NTI5 1447 aa28.84■■■□□ 2.21
CHRNA4-206ENST00000498043 DNMBPQ6XZF7 1577 aa28.83■■■□□ 2.21
CHRNA4-206ENST00000498043 CSRNP3Q8WYN3 585 aa28.82■■■□□ 2.2
CHRNA4-206ENST00000498043 FGD5Q6ZNL6 1462 aa28.8■■■□□ 2.2
CHRNA4-206ENST00000498043 TOPBP1Q92547 1522 aa28.77■■■□□ 2.2
CHRNA4-206ENST00000498043 URB2Q14146 1524 aaKnown RBP28.72■■■□□ 2.19
CHRNA4-206ENST00000498043 KIF21BO75037 1637 aa28.68■■■□□ 2.18
CHRNA4-206ENST00000498043 KIF27Q86VH2 1401 aa28.65■■■□□ 2.18
CHRNA4-206ENST00000498043 GOLGA3Q08378 1498 aa28.65■■■□□ 2.18
CHRNA4-206ENST00000498043 POLA1P09884 1462 aaPredicted RBP28.64■■■□□ 2.18
CHRNA4-206ENST00000498043 CUX2O14529 1486 aa28.62■■■□□ 2.17
CHRNA4-206ENST00000498043 RAD54L2Q9Y4B4 1467 aa28.56■■■□□ 2.16
CHRNA4-206ENST00000498043 RAPGEF2Q9Y4G8 1499 aa28.53■■■□□ 2.16
CHRNA4-206ENST00000498043 MRC2Q9UBG0 1479 aa28.52■■■□□ 2.16
CHRNA4-206ENST00000498043 TNIKQ9UKE5 1360 aa28.52■■■□□ 2.16
CHRNA4-206ENST00000498043 UBTFP17480 764 aaKnown RBP28.51■■■□□ 2.15
CHRNA4-206ENST00000498043 ABCA10Q8WWZ4 1543 aa28.5■■■□□ 2.15
CHRNA4-206ENST00000498043 PRXQ9BXM0 1461 aa28.48■■■□□ 2.15
CHRNA4-206ENST00000498043 WDR97A6NE52 1622 aa28.48■■■□□ 2.15
CHRNA4-206ENST00000498043 CEP162Q5TB80 1403 aa28.45■■■□□ 2.15
CHRNA4-206ENST00000498043 ERICH3Q5RHP9 1530 aa28.45■■■□□ 2.14
CHRNA4-206ENST00000498043 ERCC6Q03468 1493 aa28.44■■■□□ 2.14
CHRNA4-206ENST00000498043 WDR62O43379 1518 aa28.37■■■□□ 2.13
CHRNA4-206ENST00000498043 IGF1RP08069 1367 aa28.37■■■□□ 2.13
CHRNA4-206ENST00000498043 TARBP1Q13395 1621 aaKnown RBP28.34■■■□□ 2.13
CHRNA4-206ENST00000498043 THOC2Q8NI27 1593 aaKnown RBP28.32■■■□□ 2.12
CHRNA4-206ENST00000498043 ABCA5Q8WWZ7 1642 aa28.31■■■□□ 2.12
CHRNA4-206ENST00000498043 TDRD9Q8NDG6 1382 aaKnown RBP28.26■■■□□ 2.11
CHRNA4-206ENST00000498043 CARMIL1Q5VZK9 1371 aa28.24■■■□□ 2.11
CHRNA4-206ENST00000498043 CUL7Q14999 1698 aa28.22■■■□□ 2.11
CHRNA4-206ENST00000498043 GAPVD1Q14C86 1478 aa28.21■■■□□ 2.11
CHRNA4-206ENST00000498043 CLIP1P30622 1438 aa28.2■■■□□ 2.1
CHRNA4-206ENST00000498043 IFT140Q96RY7 1462 aa28.15■■■□□ 2.1
CHRNA4-206ENST00000498043 PBRM1Q86U86 1689 aa28.14■■■□□ 2.09
CHRNA4-206ENST00000498043 RANGAP1P46060 587 aaPredicted RBP28.14■■■□□ 2.09
CHRNA4-206ENST00000498043 AQRO60306 1485 aaKnown RBP eCLIP28.08■■■□□ 2.09
CHRNA4-206ENST00000498043 ZNF608Q9ULD9 1512 aaPredicted RBP28.07■■■□□ 2.08
CHRNA4-206ENST00000498043 EIF4G3O43432 1585 aaKnown RBP28.01■■■□□ 2.07
CHRNA4-206ENST00000498043 GRIN2BQ13224 1484 aa27.97■■■□□ 2.07
CHRNA4-206ENST00000498043 CTTNBP2Q8WZ74 1663 aa27.97■■■□□ 2.07
CHRNA4-206ENST00000498043 PCGF6Q9BYE7 350 aa27.96■■■□□ 2.07
CHRNA4-206ENST00000498043 ADAMTS12P58397 1594 aa27.95■■■□□ 2.07
CHRNA4-206ENST00000498043 VPS8Q8N3P4 1428 aa27.95■■■□□ 2.06
CHRNA4-206ENST00000498043 ARAP1Q96P48 1450 aa27.94■■■□□ 2.06
CHRNA4-206ENST00000498043 PPARGC1BQ86YN6 1023 aaKnown RBP27.93■■■□□ 2.06
CHRNA4-206ENST00000498043 ARHGAP35Q9NRY4 1499 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms