RNA–Protein interactions for RNA: ENST00000498015.2

NEB-217, Transcript of nebulin, humanhuman

TSL 5

Gene NEB, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEB-217ENST00000498015 NISCHQ9Y2I1 1504 aa18■□□□□ 0.47
NEB-217ENST00000498015 ABCC9O60706 1549 aa16.08■□□□□ 0.16
NEB-217ENST00000498015 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.16
NEB-217ENST00000498015 RB1CC1Q8TDY2 1594 aa15.3■□□□□ 0.04
NEB-217ENST00000498015 DCAF8L2P0C7V8 631 aa15.25■□□□□ 0.03
NEB-217ENST00000498015 AEBP2Q6ZN18 517 aaPredicted RBP15.25■□□□□ 0.03
NEB-217ENST00000498015 NACADO15069 1562 aa15.21■□□□□ 0.03
NEB-217ENST00000498015 DNAJC5BQ9UF47 199 aa15.03■□□□□ -0
NEB-217ENST00000498015 PABPN1Q86U42 306 aaKnown RBP eCLIP15.02■□□□□ -0
NEB-217ENST00000498015 MYO15BQ96JP2 1530 aa15.01□□□□□ -0.01
NEB-217ENST00000498015 UNC13AQ9UPW8 1703 aa14.93□□□□□ -0.02
NEB-217ENST00000498015 ZCCHC6Q5VYS8 1495 aaKnown RBP14.92□□□□□ -0.02
NEB-217ENST00000498015 DCAF1Q9Y4B6 1507 aa14.85□□□□□ -0.03
NEB-217ENST00000498015 BICRAQ9NZM4 1560 aa14.85□□□□□ -0.03
NEB-217ENST00000498015 SCRIBQ14160 1630 aa14.7□□□□□ -0.06
NEB-217ENST00000498015 SHROOM4Q9ULL8 1493 aa14.63□□□□□ -0.07
NEB-217ENST00000498015 CC2D2AQ9P2K1 1620 aa14.49□□□□□ -0.09
NEB-217ENST00000498015 EIF4G1Q04637 1599 aaKnown RBP14.48□□□□□ -0.09
NEB-217ENST00000498015 CECR2Q9BXF3 1484 aa14.46□□□□□ -0.09
NEB-217ENST00000498015 CHIC1Q5VXU3 224 aa14.4□□□□□ -0.1
NEB-217ENST00000498015 NCAPD3P42695 1498 aa14.06□□□□□ -0.16
NEB-217ENST00000498015 ATAD2BQ9ULI0 1458 aa14.03□□□□□ -0.16
NEB-217ENST00000498015 SMARCA4P51532 1647 aa14.01□□□□□ -0.17
NEB-217ENST00000498015 SMARCA2P51531 1590 aa13.98□□□□□ -0.17
NEB-217ENST00000498015 BAZ1AQ9NRL2 1556 aaPredicted RBP13.96□□□□□ -0.18
NEB-217ENST00000498015 HMGXB3Q12766 1538 aa13.93□□□□□ -0.18
NEB-217ENST00000498015 BAZ1BQ9UIG0 1483 aaKnown RBP13.9□□□□□ -0.18
NEB-217ENST00000498015 MROH2BQ7Z745 1585 aa13.88□□□□□ -0.19
NEB-217ENST00000498015 ERCC6Q03468 1493 aa13.87□□□□□ -0.19
NEB-217ENST00000498015 PEG3Q9GZU2 1588 aa13.85□□□□□ -0.19
NEB-217ENST00000498015 NESP48681 1621 aa13.82□□□□□ -0.2
NEB-217ENST00000498015 CUX2O14529 1486 aa13.8□□□□□ -0.2
NEB-217ENST00000498015 DNAJC5Q9H3Z4 198 aa13.74□□□□□ -0.21
NEB-217ENST00000498015 LAMC3Q9Y6N6 1575 aa13.71□□□□□ -0.22
NEB-217ENST00000498015 WIZO95785 1651 aa13.7□□□□□ -0.22
NEB-217ENST00000498015 PDS5BQ9NTI5 1447 aa13.65□□□□□ -0.22
NEB-217ENST00000498015 CADPSQ9ULU8 1353 aa13.65□□□□□ -0.22
NEB-217ENST00000498015 RSF1Q96T23 1441 aaPredicted RBP13.64□□□□□ -0.23
NEB-217ENST00000498015 THOC2Q8NI27 1593 aaKnown RBP13.62□□□□□ -0.23
NEB-217ENST00000498015 KIF21AQ7Z4S6 1674 aa13.62□□□□□ -0.23
NEB-217ENST00000498015 TOP2AP11388 1531 aaKnown RBP13.54□□□□□ -0.24
NEB-217ENST00000498015 MRC2Q9UBG0 1479 aa13.53□□□□□ -0.24
NEB-217ENST00000498015 CFTRP13569 1480 aa13.49□□□□□ -0.25
NEB-217ENST00000498015 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
NEB-217ENST00000498015 CEP164Q9UPV0 1460 aa13.48□□□□□ -0.25
NEB-217ENST00000498015 WDR62O43379 1518 aa13.47□□□□□ -0.25
NEB-217ENST00000498015 CCDC88BA6NC98 1476 aa13.4□□□□□ -0.26
NEB-217ENST00000498015 URB2Q14146 1524 aaKnown RBP13.37□□□□□ -0.27
NEB-217ENST00000498015 PRDM2Q13029 1718 aa13.31□□□□□ -0.28
NEB-217ENST00000498015 TOPBP1Q92547 1522 aa13.23□□□□□ -0.29
NEB-217ENST00000498015 OSCARQ8IYS5 282 aa13.23□□□□□ -0.29
NEB-217ENST00000498015 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
NEB-217ENST00000498015 TRIM41Q8WV44 630 aa13.21□□□□□ -0.29
NEB-217ENST00000498015 ABCC8Q09428 1581 aa13.2□□□□□ -0.3
NEB-217ENST00000498015 ZNF608Q9ULD9 1512 aaPredicted RBP13.2□□□□□ -0.3
NEB-217ENST00000498015 DNMBPQ6XZF7 1577 aa13.18□□□□□ -0.3
NEB-217ENST00000498015 SENP3Q9H4L4 574 aaPredicted RBP13.17□□□□□ -0.3
NEB-217ENST00000498015 SUPT5HO00267 1087 aaKnown RBP13.14□□□□□ -0.31
NEB-217ENST00000498015 AQRO60306 1485 aaKnown RBP eCLIP13.1□□□□□ -0.31
NEB-217ENST00000498015 POLA1P09884 1462 aaPredicted RBP13.1□□□□□ -0.31
NEB-217ENST00000498015 EIF4G3O43432 1585 aaKnown RBP13.1□□□□□ -0.31
NEB-217ENST00000498015 TARBP1Q13395 1621 aaKnown RBP13.09□□□□□ -0.31
NEB-217ENST00000498015 RAD54L2Q9Y4B4 1467 aa13.08□□□□□ -0.32
NEB-217ENST00000498015 SOGA1O94964 1423 aa13.06□□□□□ -0.32
NEB-217ENST00000498015 TDRD9Q8NDG6 1382 aaKnown RBP13.05□□□□□ -0.32
NEB-217ENST00000498015 FBLN2P98095 1184 aa13.04□□□□□ -0.32
NEB-217ENST00000498015 FGD5Q6ZNL6 1462 aa13.04□□□□□ -0.32
NEB-217ENST00000498015 CUX1P39880 1505 aa13.03□□□□□ -0.32
NEB-217ENST00000498015 RIMBP3CA6NJZ7 1639 aa13□□□□□ -0.33
NEB-217ENST00000498015 RIMBP3BA6NNM3 1639 aa13□□□□□ -0.33
NEB-217ENST00000498015 RIMBP3Q9UFD9 1639 aa13□□□□□ -0.33
NEB-217ENST00000498015 CHD1O14646 1710 aa12.99□□□□□ -0.33
NEB-217ENST00000498015 ARHGEF11O15085 1522 aa12.98□□□□□ -0.33
NEB-217ENST00000498015 SNAPC4Q5SXM2 1469 aa12.96□□□□□ -0.34
NEB-217ENST00000498015 CHMP7Q8WUX9 453 aaPredicted RBP12.94□□□□□ -0.34
NEB-217ENST00000498015 WDR97A6NE52 1622 aa12.94□□□□□ -0.34
NEB-217ENST00000498015 GRIN2BQ13224 1484 aa12.93□□□□□ -0.34
NEB-217ENST00000498015 CYB5RLQ6IPT4 315 aa12.93□□□□□ -0.34
NEB-217ENST00000498015 PHF23Q9BUL5 403 aaPredicted RBP12.91□□□□□ -0.34
NEB-217ENST00000498015 MAGI1Q96QZ7 1491 aaPredicted RBP12.91□□□□□ -0.34
NEB-217ENST00000498015 GAPVD1Q14C86 1478 aa12.9□□□□□ -0.34
NEB-217ENST00000498015 ABCA10Q8WWZ4 1543 aa12.88□□□□□ -0.35
NEB-217ENST00000498015 SYNJ2O15056 1496 aa12.87□□□□□ -0.35
NEB-217ENST00000498015 WRNQ14191 1432 aaPredicted RBP eCLIP12.87□□□□□ -0.35
NEB-217ENST00000498015 SYNJ1O43426 1573 aa12.86□□□□□ -0.35
NEB-217ENST00000498015 ARAP1Q96P48 1450 aa12.85□□□□□ -0.35
NEB-217ENST00000498015 PBRM1Q86U86 1689 aa12.85□□□□□ -0.35
NEB-217ENST00000498015 CLASP1Q7Z460 1538 aa12.84□□□□□ -0.35
NEB-217ENST00000498015 ABCA5Q8WWZ7 1642 aa12.84□□□□□ -0.35
NEB-217ENST00000498015 TOP2BQ02880 1626 aa12.83□□□□□ -0.36
NEB-217ENST00000498015 BIVM-ERCC5R4GMW8 1640 aa12.81□□□□□ -0.36
NEB-217ENST00000498015 TRHP20396 242 aaPredicted RBP12.77□□□□□ -0.37
NEB-217ENST00000498015 GRIN2AQ12879 1464 aa12.76□□□□□ -0.37
NEB-217ENST00000498015 ADAMTS12P58397 1594 aa12.74□□□□□ -0.37
NEB-217ENST00000498015 FHAD1B1AJZ9 1412 aa12.74□□□□□ -0.37
NEB-217ENST00000498015 ERICH3Q5RHP9 1530 aa12.72□□□□□ -0.37
NEB-217ENST00000498015 NUP160Q12769 1436 aa12.71□□□□□ -0.38
NEB-217ENST00000498015 CEP170Q5SW79 1584 aa12.69□□□□□ -0.38
NEB-217ENST00000498015 ERCC6L2Q5T890 1561 aa12.67□□□□□ -0.38
NEB-217ENST00000498015 JPH4Q96JJ6 628 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms