RNA–Protein interactions for RNA: ENST00000497978.1

NUDCD3-211, Transcript of NudC domain containing 3, humanhuman

TSL 4

Gene NUDCD3, Length 659 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-211ENST00000497978 NISCHQ9Y2I1 1504 aa29.18■■■□□ 2.26
NUDCD3-211ENST00000497978 CCDC180Q9P1Z9 1646 aa26.15■■□□□ 1.78
NUDCD3-211ENST00000497978 ABCC9O60706 1549 aa26.04■■□□□ 1.76
NUDCD3-211ENST00000497978 AEBP2Q6ZN18 517 aaPredicted RBP25.89■■□□□ 1.74
NUDCD3-211ENST00000497978 CHIC1Q5VXU3 224 aa25.59■■□□□ 1.69
NUDCD3-211ENST00000497978 RB1CC1Q8TDY2 1594 aa24.86■■□□□ 1.57
NUDCD3-211ENST00000497978 NACADO15069 1562 aa24.71■■□□□ 1.55
NUDCD3-211ENST00000497978 DCAF8L2P0C7V8 631 aa24.65■■□□□ 1.54
NUDCD3-211ENST00000497978 MYO15BQ96JP2 1530 aa24.4■■□□□ 1.5
NUDCD3-211ENST00000497978 DNAJC5BQ9UF47 199 aa24.29■■□□□ 1.48
NUDCD3-211ENST00000497978 PABPN1Q86U42 306 aaKnown RBP eCLIP24.27■■□□□ 1.48
NUDCD3-211ENST00000497978 UNC13AQ9UPW8 1703 aa24.24■■□□□ 1.47
NUDCD3-211ENST00000497978 ZCCHC6Q5VYS8 1495 aaKnown RBP24.19■■□□□ 1.46
NUDCD3-211ENST00000497978 DCAF1Q9Y4B6 1507 aa24.12■■□□□ 1.45
NUDCD3-211ENST00000497978 BICRAQ9NZM4 1560 aa24.07■■□□□ 1.44
NUDCD3-211ENST00000497978 SHROOM4Q9ULL8 1493 aa23.82■■□□□ 1.4
NUDCD3-211ENST00000497978 SCRIBQ14160 1630 aa23.82■■□□□ 1.4
NUDCD3-211ENST00000497978 CC2D2AQ9P2K1 1620 aa23.52■■□□□ 1.36
NUDCD3-211ENST00000497978 EIF4G1Q04637 1599 aaKnown RBP23.5■■□□□ 1.35
NUDCD3-211ENST00000497978 CECR2Q9BXF3 1484 aa23.46■■□□□ 1.35
NUDCD3-211ENST00000497978 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
NUDCD3-211ENST00000497978 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
NUDCD3-211ENST00000497978 ATAD2BQ9ULI0 1458 aa22.73■■□□□ 1.23
NUDCD3-211ENST00000497978 SMARCA2P51531 1590 aa22.71■■□□□ 1.23
NUDCD3-211ENST00000497978 BAZ1AQ9NRL2 1556 aaPredicted RBP22.67■■□□□ 1.22
NUDCD3-211ENST00000497978 HMGXB3Q12766 1538 aa22.64■■□□□ 1.21
NUDCD3-211ENST00000497978 BAZ1BQ9UIG0 1483 aaKnown RBP22.54■■□□□ 1.2
NUDCD3-211ENST00000497978 ERCC6Q03468 1493 aa22.52■■□□□ 1.2
NUDCD3-211ENST00000497978 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
NUDCD3-211ENST00000497978 PHF23Q9BUL5 403 aaPredicted RBP22.51■■□□□ 1.19
NUDCD3-211ENST00000497978 MROH2BQ7Z745 1585 aa22.47■■□□□ 1.19
NUDCD3-211ENST00000497978 CUX2O14529 1486 aa22.42■■□□□ 1.18
NUDCD3-211ENST00000497978 NESP48681 1621 aa22.38■■□□□ 1.17
NUDCD3-211ENST00000497978 DNAJC5Q9H3Z4 198 aa22.28■■□□□ 1.16
NUDCD3-211ENST00000497978 LAMC3Q9Y6N6 1575 aa22.28■■□□□ 1.16
NUDCD3-211ENST00000497978 WIZO95785 1651 aa22.21■■□□□ 1.15
NUDCD3-211ENST00000497978 PDS5BQ9NTI5 1447 aa22.17■■□□□ 1.14
NUDCD3-211ENST00000497978 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
NUDCD3-211ENST00000497978 THOC2Q8NI27 1593 aaKnown RBP22.12■■□□□ 1.13
NUDCD3-211ENST00000497978 KIF21AQ7Z4S6 1674 aa22.1■■□□□ 1.13
NUDCD3-211ENST00000497978 RSF1Q96T23 1441 aaPredicted RBP22.06■■□□□ 1.12
NUDCD3-211ENST00000497978 TOP2AP11388 1531 aaKnown RBP21.96■■□□□ 1.11
NUDCD3-211ENST00000497978 MRC2Q9UBG0 1479 aa21.95■■□□□ 1.1
NUDCD3-211ENST00000497978 SENP3Q9H4L4 574 aaPredicted RBP21.94■■□□□ 1.1
NUDCD3-211ENST00000497978 CEP164Q9UPV0 1460 aa21.89■■□□□ 1.09
NUDCD3-211ENST00000497978 CFTRP13569 1480 aa21.88■■□□□ 1.09
NUDCD3-211ENST00000497978 WDR62O43379 1518 aa21.87■■□□□ 1.09
NUDCD3-211ENST00000497978 FANCD2Q9BXW9 1451 aa21.87■■□□□ 1.09
NUDCD3-211ENST00000497978 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
NUDCD3-211ENST00000497978 PRDM2Q13029 1718 aa21.68■■□□□ 1.06
NUDCD3-211ENST00000497978 URB2Q14146 1524 aaKnown RBP21.65■■□□□ 1.06
NUDCD3-211ENST00000497978 ABCC8Q09428 1581 aa21.46■■□□□ 1.03
NUDCD3-211ENST00000497978 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
NUDCD3-211ENST00000497978 OSCARQ8IYS5 282 aa21.45■■□□□ 1.02
NUDCD3-211ENST00000497978 IFT140Q96RY7 1462 aa21.45■■□□□ 1.02
NUDCD3-211ENST00000497978 DNMBPQ6XZF7 1577 aa21.4■■□□□ 1.02
NUDCD3-211ENST00000497978 ZNF608Q9ULD9 1512 aaPredicted RBP21.36■■□□□ 1.01
NUDCD3-211ENST00000497978 TRIM41Q8WV44 630 aa21.36■■□□□ 1.01
NUDCD3-211ENST00000497978 EIF4G3O43432 1585 aaKnown RBP21.26■□□□□ 0.99
NUDCD3-211ENST00000497978 TARBP1Q13395 1621 aaKnown RBP21.24■□□□□ 0.99
NUDCD3-211ENST00000497978 POLA1P09884 1462 aaPredicted RBP21.24■□□□□ 0.99
NUDCD3-211ENST00000497978 SUPT5HO00267 1087 aaKnown RBP21.21■□□□□ 0.99
NUDCD3-211ENST00000497978 AQRO60306 1485 aaKnown RBP eCLIP21.2■□□□□ 0.98
NUDCD3-211ENST00000497978 SOGA1O94964 1423 aa21.17■□□□□ 0.98
NUDCD3-211ENST00000497978 RAD54L2Q9Y4B4 1467 aa21.15■□□□□ 0.98
NUDCD3-211ENST00000497978 FGD5Q6ZNL6 1462 aa21.13■□□□□ 0.97
NUDCD3-211ENST00000497978 CUX1P39880 1505 aa21.11■□□□□ 0.97
NUDCD3-211ENST00000497978 FBLN2P98095 1184 aa21.1■□□□□ 0.97
NUDCD3-211ENST00000497978 RIMBP3CA6NJZ7 1639 aa21.1■□□□□ 0.97
NUDCD3-211ENST00000497978 RIMBP3BA6NNM3 1639 aa21.1■□□□□ 0.97
NUDCD3-211ENST00000497978 RIMBP3Q9UFD9 1639 aa21.1■□□□□ 0.97
NUDCD3-211ENST00000497978 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
NUDCD3-211ENST00000497978 CHD1O14646 1710 aa21.09■□□□□ 0.97
NUDCD3-211ENST00000497978 WDR97A6NE52 1622 aa21.07■□□□□ 0.96
NUDCD3-211ENST00000497978 ARHGEF11O15085 1522 aa21.04■□□□□ 0.96
NUDCD3-211ENST00000497978 SNAPC4Q5SXM2 1469 aa21■□□□□ 0.95
NUDCD3-211ENST00000497978 GRIN2BQ13224 1484 aa20.97■□□□□ 0.95
NUDCD3-211ENST00000497978 MAGI1Q96QZ7 1491 aaPredicted RBP20.96■□□□□ 0.95
NUDCD3-211ENST00000497978 CHMP7Q8WUX9 453 aaPredicted RBP20.96■□□□□ 0.95
NUDCD3-211ENST00000497978 CYB5RLQ6IPT4 315 aa20.92■□□□□ 0.94
NUDCD3-211ENST00000497978 PLPPR3Q6T4P5 718 aa20.92■□□□□ 0.94
NUDCD3-211ENST00000497978 GAPVD1Q14C86 1478 aa20.91■□□□□ 0.94
NUDCD3-211ENST00000497978 ABCA10Q8WWZ4 1543 aa20.9■□□□□ 0.94
NUDCD3-211ENST00000497978 SYNJ2O15056 1496 aa20.89■□□□□ 0.94
NUDCD3-211ENST00000497978 SYNJ1O43426 1573 aa20.89■□□□□ 0.93
NUDCD3-211ENST00000497978 PBRM1Q86U86 1689 aa20.88■□□□□ 0.93
NUDCD3-211ENST00000497978 WRNQ14191 1432 aaPredicted RBP eCLIP20.87■□□□□ 0.93
NUDCD3-211ENST00000497978 ABCA5Q8WWZ7 1642 aa20.84■□□□□ 0.93
NUDCD3-211ENST00000497978 CLASP1Q7Z460 1538 aa20.83■□□□□ 0.93
NUDCD3-211ENST00000497978 ARAP1Q96P48 1450 aa20.83■□□□□ 0.93
NUDCD3-211ENST00000497978 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
NUDCD3-211ENST00000497978 BIVM-ERCC5R4GMW8 1640 aa20.81■□□□□ 0.92
NUDCD3-211ENST00000497978 GRIN2AQ12879 1464 aa20.69■□□□□ 0.9
NUDCD3-211ENST00000497978 ADAMTS12P58397 1594 aa20.68■□□□□ 0.9
NUDCD3-211ENST00000497978 TRHP20396 242 aaPredicted RBP20.68■□□□□ 0.9
NUDCD3-211ENST00000497978 FHAD1B1AJZ9 1412 aa20.66■□□□□ 0.9
NUDCD3-211ENST00000497978 ERICH3Q5RHP9 1530 aa20.65■□□□□ 0.9
NUDCD3-211ENST00000497978 NUP160Q12769 1436 aa20.61■□□□□ 0.89
NUDCD3-211ENST00000497978 CEP170Q5SW79 1584 aa20.59■□□□□ 0.89
NUDCD3-211ENST00000497978 ERCC6L2Q5T890 1561 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms