RNA–Protein interactions for RNA: ENST00000496756.2

PHGDH-207, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 508 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-207ENST00000496756 NISCHQ9Y2I1 1504 aa32.58■■■□□ 2.81
PHGDH-207ENST00000496756 ABCC9O60706 1549 aa29.86■■■□□ 2.37
PHGDH-207ENST00000496756 CCDC180Q9P1Z9 1646 aa29.45■■■□□ 2.31
PHGDH-207ENST00000496756 DNAJC5BQ9UF47 199 aa28.39■■■□□ 2.14
PHGDH-207ENST00000496756 RB1CC1Q8TDY2 1594 aa28.28■■■□□ 2.12
PHGDH-207ENST00000496756 NACADO15069 1562 aa27.98■■■□□ 2.07
PHGDH-207ENST00000496756 PABPN1Q86U42 306 aaKnown RBP eCLIP27.72■■■□□ 2.03
PHGDH-207ENST00000496756 DCAF8L2P0C7V8 631 aa27.71■■■□□ 2.03
PHGDH-207ENST00000496756 UNC13AQ9UPW8 1703 aa27.55■■■□□ 2
PHGDH-207ENST00000496756 MYO15BQ96JP2 1530 aa27.46■■□□□ 1.99
PHGDH-207ENST00000496756 BICRAQ9NZM4 1560 aa27.4■■□□□ 1.98
PHGDH-207ENST00000496756 SHROOM4Q9ULL8 1493 aa27.09■■□□□ 1.93
PHGDH-207ENST00000496756 CECR2Q9BXF3 1484 aa26.98■■□□□ 1.91
PHGDH-207ENST00000496756 CC2D2AQ9P2K1 1620 aa26.96■■□□□ 1.91
PHGDH-207ENST00000496756 DCAF1Q9Y4B6 1507 aa26.92■■□□□ 1.9
PHGDH-207ENST00000496756 ZCCHC6Q5VYS8 1495 aaKnown RBP26.89■■□□□ 1.9
PHGDH-207ENST00000496756 EIF4G1Q04637 1599 aaKnown RBP26.8■■□□□ 1.88
PHGDH-207ENST00000496756 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
PHGDH-207ENST00000496756 DNAJC5Q9H3Z4 198 aa26.49■■□□□ 1.83
PHGDH-207ENST00000496756 CUX2O14529 1486 aa25.98■■□□□ 1.75
PHGDH-207ENST00000496756 ERCC6Q03468 1493 aa25.86■■□□□ 1.73
PHGDH-207ENST00000496756 NCAPD3P42695 1498 aa25.83■■□□□ 1.73
PHGDH-207ENST00000496756 ATAD2BQ9ULI0 1458 aa25.66■■□□□ 1.7
PHGDH-207ENST00000496756 SMARCA2P51531 1590 aa25.6■■□□□ 1.69
PHGDH-207ENST00000496756 HMGXB3Q12766 1538 aa25.58■■□□□ 1.69
PHGDH-207ENST00000496756 SMARCA4P51532 1647 aa25.5■■□□□ 1.67
PHGDH-207ENST00000496756 NESP48681 1621 aa25.49■■□□□ 1.67
PHGDH-207ENST00000496756 BAZ1BQ9UIG0 1483 aaKnown RBP25.4■■□□□ 1.66
PHGDH-207ENST00000496756 THOC2Q8NI27 1593 aaKnown RBP25.35■■□□□ 1.65
PHGDH-207ENST00000496756 BAZ1AQ9NRL2 1556 aaPredicted RBP25.35■■□□□ 1.65
PHGDH-207ENST00000496756 LAMC3Q9Y6N6 1575 aa25.32■■□□□ 1.64
PHGDH-207ENST00000496756 PEG3Q9GZU2 1588 aa25.29■■□□□ 1.64
PHGDH-207ENST00000496756 PDS5BQ9NTI5 1447 aa25.21■■□□□ 1.63
PHGDH-207ENST00000496756 KIF21AQ7Z4S6 1674 aa25.16■■□□□ 1.62
PHGDH-207ENST00000496756 TRIM41Q8WV44 630 aa25.1■■□□□ 1.61
PHGDH-207ENST00000496756 MROH2BQ7Z745 1585 aa25.06■■□□□ 1.6
PHGDH-207ENST00000496756 CADPSQ9ULU8 1353 aa25.02■■□□□ 1.6
PHGDH-207ENST00000496756 MRC2Q9UBG0 1479 aa24.98■■□□□ 1.59
PHGDH-207ENST00000496756 WDR62O43379 1518 aa24.93■■□□□ 1.58
PHGDH-207ENST00000496756 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
PHGDH-207ENST00000496756 OSCARQ8IYS5 282 aa24.74■■□□□ 1.55
PHGDH-207ENST00000496756 WIZO95785 1651 aa24.73■■□□□ 1.55
PHGDH-207ENST00000496756 FANCD2Q9BXW9 1451 aa24.72■■□□□ 1.55
PHGDH-207ENST00000496756 CFTRP13569 1480 aa24.63■■□□□ 1.53
PHGDH-207ENST00000496756 URB2Q14146 1524 aaKnown RBP24.51■■□□□ 1.51
PHGDH-207ENST00000496756 TOP2AP11388 1531 aaKnown RBP24.43■■□□□ 1.5
PHGDH-207ENST00000496756 RSF1Q96T23 1441 aaPredicted RBP24.4■■□□□ 1.5
PHGDH-207ENST00000496756 RIMBP3CA6NJZ7 1639 aa24.39■■□□□ 1.5
PHGDH-207ENST00000496756 RIMBP3BA6NNM3 1639 aa24.39■■□□□ 1.5
PHGDH-207ENST00000496756 RIMBP3Q9UFD9 1639 aa24.39■■□□□ 1.5
PHGDH-207ENST00000496756 IFT140Q96RY7 1462 aa24.33■■□□□ 1.49
PHGDH-207ENST00000496756 PRDM2Q13029 1718 aa24.32■■□□□ 1.48
PHGDH-207ENST00000496756 ARHGEF11O15085 1522 aa24.29■■□□□ 1.48
PHGDH-207ENST00000496756 ZNF608Q9ULD9 1512 aaPredicted RBP24.28■■□□□ 1.48
PHGDH-207ENST00000496756 TOPBP1Q92547 1522 aa24.19■■□□□ 1.46
PHGDH-207ENST00000496756 ABCC8Q09428 1581 aa24.18■■□□□ 1.46
PHGDH-207ENST00000496756 CYB5RLQ6IPT4 315 aa24.16■■□□□ 1.46
PHGDH-207ENST00000496756 CCDC88BA6NC98 1476 aa24.15■■□□□ 1.46
PHGDH-207ENST00000496756 EIF4G3O43432 1585 aaKnown RBP24.13■■□□□ 1.45
PHGDH-207ENST00000496756 DNMBPQ6XZF7 1577 aa24.07■■□□□ 1.44
PHGDH-207ENST00000496756 TRHP20396 242 aaPredicted RBP24.06■■□□□ 1.44
PHGDH-207ENST00000496756 CHD1O14646 1710 aa24.03■■□□□ 1.44
PHGDH-207ENST00000496756 AQRO60306 1485 aaKnown RBP eCLIP24.02■■□□□ 1.442e-7■□□□□ 9.8
PHGDH-207ENST00000496756 TARBP1Q13395 1621 aaKnown RBP24■■□□□ 1.43
PHGDH-207ENST00000496756 ARAP1Q96P48 1450 aa24■■□□□ 1.43
PHGDH-207ENST00000496756 FBLN2P98095 1184 aa23.99■■□□□ 1.43
PHGDH-207ENST00000496756 POLA1P09884 1462 aaPredicted RBP23.91■■□□□ 1.42
PHGDH-207ENST00000496756 SOGA1O94964 1423 aa23.82■■□□□ 1.4
PHGDH-207ENST00000496756 RAD54L2Q9Y4B4 1467 aa23.81■■□□□ 1.4
PHGDH-207ENST00000496756 TDRD9Q8NDG6 1382 aaKnown RBP23.8■■□□□ 1.4
PHGDH-207ENST00000496756 WDR97A6NE52 1622 aa23.79■■□□□ 1.4
PHGDH-207ENST00000496756 SNAPC4Q5SXM2 1469 aa23.76■■□□□ 1.39
PHGDH-207ENST00000496756 CLASP1Q7Z460 1538 aa23.76■■□□□ 1.39
PHGDH-207ENST00000496756 CHMP7Q8WUX9 453 aaPredicted RBP23.76■■□□□ 1.39
PHGDH-207ENST00000496756 SYNJ1O43426 1573 aa23.74■■□□□ 1.39
PHGDH-207ENST00000496756 AEBP2Q6ZN18 517 aaPredicted RBP23.73■■□□□ 1.39
PHGDH-207ENST00000496756 MAGI1Q96QZ7 1491 aaPredicted RBP23.73■■□□□ 1.39
PHGDH-207ENST00000496756 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
PHGDH-207ENST00000496756 GRIN2BQ13224 1484 aa23.67■■□□□ 1.38
PHGDH-207ENST00000496756 SYNJ2O15056 1496 aa23.64■■□□□ 1.38
PHGDH-207ENST00000496756 CUX1P39880 1505 aa23.59■■□□□ 1.37
PHGDH-207ENST00000496756 GAPVD1Q14C86 1478 aa23.56■■□□□ 1.36
PHGDH-207ENST00000496756 PBRM1Q86U86 1689 aa23.5■■□□□ 1.35
PHGDH-207ENST00000496756 ABCA10Q8WWZ4 1543 aa23.42■■□□□ 1.34
PHGDH-207ENST00000496756 ABCA5Q8WWZ7 1642 aa23.4■■□□□ 1.34
PHGDH-207ENST00000496756 GRIN2AQ12879 1464 aa23.35■■□□□ 1.33
PHGDH-207ENST00000496756 ERCC6L2Q5T890 1561 aa23.31■■□□□ 1.32
PHGDH-207ENST00000496756 NUP160Q12769 1436 aa23.29■■□□□ 1.32
PHGDH-207ENST00000496756 CEP170Q5SW79 1584 aa23.29■■□□□ 1.32
PHGDH-207ENST00000496756 WRNQ14191 1432 aaPredicted RBP eCLIP23.26■■□□□ 1.31
PHGDH-207ENST00000496756 ADAMTS12P58397 1594 aa23.25■■□□□ 1.31
PHGDH-207ENST00000496756 SHROOM2Q13796 1616 aa23.22■■□□□ 1.31
PHGDH-207ENST00000496756 FHAD1B1AJZ9 1412 aa23.21■■□□□ 1.31
PHGDH-207ENST00000496756 KIF13AQ9H1H9 1805 aa23.15■■□□□ 1.3
PHGDH-207ENST00000496756 ERICH3Q5RHP9 1530 aa23.13■■□□□ 1.29
PHGDH-207ENST00000496756 PRG4Q92954 1404 aaPredicted RBP23.11■■□□□ 1.29
PHGDH-207ENST00000496756 TOP2BQ02880 1626 aa23.11■■□□□ 1.29
PHGDH-207ENST00000496756 BIVM-ERCC5R4GMW8 1640 aa23.1■■□□□ 1.29
PHGDH-207ENST00000496756 JPH4Q96JJ6 628 aa23.07■■□□□ 1.28
PHGDH-207ENST00000496756 NPM1P06748 294 aaKnown RBP eCLIP23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms