RNA–Protein interactions for RNA: ENST00000496462.1

U2AF1-212, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 3,973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-212ENST00000496462 NISCHQ9Y2I1 1504 aa19.2■□□□□ 0.66
U2AF1-212ENST00000496462 ABCC9O60706 1549 aa17.07■□□□□ 0.32
U2AF1-212ENST00000496462 CCDC180Q9P1Z9 1646 aa16.93■□□□□ 0.3
U2AF1-212ENST00000496462 DCAF8L2P0C7V8 631 aa16.68■□□□□ 0.26
U2AF1-212ENST00000496462 RB1CC1Q8TDY2 1594 aa16.16■□□□□ 0.18
U2AF1-212ENST00000496462 PABPN1Q86U42 306 aaKnown RBP eCLIP16.08■□□□□ 0.16
U2AF1-212ENST00000496462 NACADO15069 1562 aa16.07■□□□□ 0.16
U2AF1-212ENST00000496462 ZCCHC6Q5VYS8 1495 aaKnown RBP15.93■□□□□ 0.14
U2AF1-212ENST00000496462 DCAF1Q9Y4B6 1507 aa15.82■□□□□ 0.12
U2AF1-212ENST00000496462 MYO15BQ96JP2 1530 aa15.8■□□□□ 0.12
U2AF1-212ENST00000496462 DNAJC5BQ9UF47 199 aa15.76■□□□□ 0.11
U2AF1-212ENST00000496462 SCRIBQ14160 1630 aa15.72■□□□□ 0.11
U2AF1-212ENST00000496462 SHROOM4Q9ULL8 1493 aa15.62■□□□□ 0.09
U2AF1-212ENST00000496462 UNC13AQ9UPW8 1703 aa15.61■□□□□ 0.09
U2AF1-212ENST00000496462 BICRAQ9NZM4 1560 aa15.58■□□□□ 0.08
U2AF1-212ENST00000496462 CECR2Q9BXF3 1484 aa15.29■□□□□ 0.04
U2AF1-212ENST00000496462 EIF4G1Q04637 1599 aaKnown RBP15.28■□□□□ 0.04
U2AF1-212ENST00000496462 CC2D2AQ9P2K1 1620 aa15.25■□□□□ 0.03
U2AF1-212ENST00000496462 SUPT5HO00267 1087 aaKnown RBP15.07■□□□□ 0
U2AF1-212ENST00000496462 BAZ1AQ9NRL2 1556 aaPredicted RBP14.96□□□□□ -0.01
U2AF1-212ENST00000496462 ATAD2BQ9ULI0 1458 aa14.91□□□□□ -0.02
U2AF1-212ENST00000496462 SMARCA4P51532 1647 aa14.89□□□□□ -0.03
U2AF1-212ENST00000496462 NCAPD3P42695 1498 aa14.87□□□□□ -0.03
U2AF1-212ENST00000496462 BAZ1BQ9UIG0 1483 aaKnown RBP14.86□□□□□ -0.03
U2AF1-212ENST00000496462 SMARCA2P51531 1590 aa14.86□□□□□ -0.03
U2AF1-212ENST00000496462 MROH2BQ7Z745 1585 aa14.84□□□□□ -0.03
U2AF1-212ENST00000496462 ERCC6Q03468 1493 aa14.77□□□□□ -0.04
U2AF1-212ENST00000496462 RSF1Q96T23 1441 aaPredicted RBP14.72□□□□□ -0.05
U2AF1-212ENST00000496462 HMGXB3Q12766 1538 aa14.71□□□□□ -0.05
U2AF1-212ENST00000496462 NESP48681 1621 aa14.68□□□□□ -0.06
U2AF1-212ENST00000496462 WIZO95785 1651 aa14.66□□□□□ -0.06
U2AF1-212ENST00000496462 PEG3Q9GZU2 1588 aa14.61□□□□□ -0.07
U2AF1-212ENST00000496462 CADPSQ9ULU8 1353 aa14.54□□□□□ -0.08
U2AF1-212ENST00000496462 PDS5BQ9NTI5 1447 aa14.53□□□□□ -0.08
U2AF1-212ENST00000496462 TOP2AP11388 1531 aaKnown RBP14.51□□□□□ -0.09
U2AF1-212ENST00000496462 LAMC3Q9Y6N6 1575 aa14.46□□□□□ -0.09
U2AF1-212ENST00000496462 CUX2O14529 1486 aa14.41□□□□□ -0.1
U2AF1-212ENST00000496462 CCDC88BA6NC98 1476 aa14.38□□□□□ -0.11
U2AF1-212ENST00000496462 FANCD2Q9BXW9 1451 aa14.38□□□□□ -0.11
U2AF1-212ENST00000496462 CEP164Q9UPV0 1460 aa14.37□□□□□ -0.11
U2AF1-212ENST00000496462 CFTRP13569 1480 aa14.34□□□□□ -0.11
U2AF1-212ENST00000496462 KIF21AQ7Z4S6 1674 aa14.33□□□□□ -0.12
U2AF1-212ENST00000496462 MRC2Q9UBG0 1479 aa14.32□□□□□ -0.12
U2AF1-212ENST00000496462 TRIM41Q8WV44 630 aa14.3□□□□□ -0.12
U2AF1-212ENST00000496462 DNAJC5Q9H3Z4 198 aa14.27□□□□□ -0.12
U2AF1-212ENST00000496462 THOC2Q8NI27 1593 aaKnown RBP14.26□□□□□ -0.13
U2AF1-212ENST00000496462 ABCC8Q09428 1581 aa14.2□□□□□ -0.14
U2AF1-212ENST00000496462 FAM9AQ8IZU1 332 aaPredicted RBP14.18□□□□□ -0.14
U2AF1-212ENST00000496462 URB2Q14146 1524 aaKnown RBP14.17□□□□□ -0.14
U2AF1-212ENST00000496462 WDR62O43379 1518 aa14.17□□□□□ -0.14
U2AF1-212ENST00000496462 FBLN2P98095 1184 aa14.13□□□□□ -0.15
U2AF1-212ENST00000496462 WRNQ14191 1432 aaPredicted RBP eCLIP14.1□□□□□ -0.15
U2AF1-212ENST00000496462 TOPBP1Q92547 1522 aa14.08□□□□□ -0.15
U2AF1-212ENST00000496462 OSCARQ8IYS5 282 aa14.05□□□□□ -0.16
U2AF1-212ENST00000496462 IFT140Q96RY7 1462 aa14.03□□□□□ -0.16
U2AF1-212ENST00000496462 ZNF608Q9ULD9 1512 aaPredicted RBP14.03□□□□□ -0.16
U2AF1-212ENST00000496462 TDRD9Q8NDG6 1382 aaKnown RBP14.02□□□□□ -0.16
U2AF1-212ENST00000496462 SOGA1O94964 1423 aa14.01□□□□□ -0.17
U2AF1-212ENST00000496462 AQRO60306 1485 aaKnown RBP eCLIP14□□□□□ -0.17
U2AF1-212ENST00000496462 DNMBPQ6XZF7 1577 aa14□□□□□ -0.17
U2AF1-212ENST00000496462 RAD54L2Q9Y4B4 1467 aa14□□□□□ -0.17
U2AF1-212ENST00000496462 PRDM2Q13029 1718 aa13.99□□□□□ -0.17
U2AF1-212ENST00000496462 POLA1P09884 1462 aaPredicted RBP13.97□□□□□ -0.17
U2AF1-212ENST00000496462 CHIC1Q5VXU3 224 aa13.96□□□□□ -0.17
U2AF1-212ENST00000496462 FGD5Q6ZNL6 1462 aa13.95□□□□□ -0.18
U2AF1-212ENST00000496462 CHMP7Q8WUX9 453 aaPredicted RBP13.94□□□□□ -0.18
U2AF1-212ENST00000496462 CUX1P39880 1505 aa13.91□□□□□ -0.18
U2AF1-212ENST00000496462 KIF27Q86VH2 1401 aa13.91□□□□□ -0.18
U2AF1-212ENST00000496462 UBTFP17480 764 aaKnown RBP13.87□□□□□ -0.19
U2AF1-212ENST00000496462 EEA1Q15075 1411 aa13.85□□□□□ -0.19
U2AF1-212ENST00000496462 EIF4G3O43432 1585 aaKnown RBP13.85□□□□□ -0.19
U2AF1-212ENST00000496462 CSRNP3Q8WYN3 585 aa13.83□□□□□ -0.2
U2AF1-212ENST00000496462 CYB5RLQ6IPT4 315 aa13.81□□□□□ -0.2
U2AF1-212ENST00000496462 TARBP1Q13395 1621 aaKnown RBP13.81□□□□□ -0.2
U2AF1-212ENST00000496462 SNAPC4Q5SXM2 1469 aa13.81□□□□□ -0.2
U2AF1-212ENST00000496462 GAPVD1Q14C86 1478 aa13.8□□□□□ -0.2
U2AF1-212ENST00000496462 GRIN2BQ13224 1484 aa13.79□□□□□ -0.2
U2AF1-212ENST00000496462 EHMT2Q96KQ7 1210 aa13.78□□□□□ -0.2
U2AF1-212ENST00000496462 TOP2BQ02880 1626 aa13.75□□□□□ -0.21
U2AF1-212ENST00000496462 SYNJ1O43426 1573 aa13.75□□□□□ -0.21
U2AF1-212ENST00000496462 ABCA10Q8WWZ4 1543 aa13.73□□□□□ -0.21
U2AF1-212ENST00000496462 MAGI1Q96QZ7 1491 aaPredicted RBP13.7□□□□□ -0.22
U2AF1-212ENST00000496462 CARMIL1Q5VZK9 1371 aa13.7□□□□□ -0.22
U2AF1-212ENST00000496462 APLP2Q06481 763 aa13.7□□□□□ -0.22
U2AF1-212ENST00000496462 SYNJ2O15056 1496 aa13.69□□□□□ -0.22
U2AF1-212ENST00000496462 RANGAP1P46060 587 aaPredicted RBP13.68□□□□□ -0.22
U2AF1-212ENST00000496462 TTBK1Q5TCY1 1321 aaPredicted RBP13.68□□□□□ -0.22
U2AF1-212ENST00000496462 TRHP20396 242 aaPredicted RBP13.67□□□□□ -0.22
U2AF1-212ENST00000496462 CHD1O14646 1710 aa13.67□□□□□ -0.22
U2AF1-212ENST00000496462 ARHGEF11O15085 1522 aa13.65□□□□□ -0.22
U2AF1-212ENST00000496462 FHAD1B1AJZ9 1412 aa13.64□□□□□ -0.23
U2AF1-212ENST00000496462 BIVM-ERCC5R4GMW8 1640 aa13.64□□□□□ -0.23
U2AF1-212ENST00000496462 WDR97A6NE52 1622 aa13.64□□□□□ -0.23
U2AF1-212ENST00000496462 NPM1P06748 294 aaKnown RBP eCLIP13.63□□□□□ -0.23
U2AF1-212ENST00000496462 RIMBP3CA6NJZ7 1639 aa13.6□□□□□ -0.23
U2AF1-212ENST00000496462 RIMBP3BA6NNM3 1639 aa13.6□□□□□ -0.23
U2AF1-212ENST00000496462 RIMBP3Q9UFD9 1639 aa13.6□□□□□ -0.23
U2AF1-212ENST00000496462 ATP1B4Q9UN42 357 aaPredicted RBP13.6□□□□□ -0.23
U2AF1-212ENST00000496462 ABCA5Q8WWZ7 1642 aa13.59□□□□□ -0.23
U2AF1-212ENST00000496462 PBRM1Q86U86 1689 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms