RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-209ENST00000496445 NISCHQ9Y2I1 1504 aa35.69■■■■□ 3.3
VTI1A-209ENST00000496445 CCDC180Q9P1Z9 1646 aa31.99■■■□□ 2.71
VTI1A-209ENST00000496445 ABCC9O60706 1549 aa31.64■■■□□ 2.66
VTI1A-209ENST00000496445 RB1CC1Q8TDY2 1594 aa30.25■■■□□ 2.43
VTI1A-209ENST00000496445 NACADO15069 1562 aa30.11■■■□□ 2.41
VTI1A-209ENST00000496445 DCAF8L2P0C7V8 631 aa29.81■■■□□ 2.36
VTI1A-209ENST00000496445 MYO15BQ96JP2 1530 aa29.79■■■□□ 2.36
VTI1A-209ENST00000496445 UNC13AQ9UPW8 1703 aa29.71■■■□□ 2.35
VTI1A-209ENST00000496445 ZCCHC6Q5VYS8 1495 aaKnown RBP29.68■■■□□ 2.34
VTI1A-209ENST00000496445 DCAF1Q9Y4B6 1507 aa29.51■■■□□ 2.32
VTI1A-209ENST00000496445 BICRAQ9NZM4 1560 aa29.43■■■□□ 2.3
VTI1A-209ENST00000496445 PABPN1Q86U42 306 aaKnown RBP eCLIP29.42■■■□□ 2.3
VTI1A-209ENST00000496445 DNAJC5BQ9UF47 199 aa29.4■■■□□ 2.3
VTI1A-209ENST00000496445 SCRIBQ14160 1630 aa29.14■■■□□ 2.26
VTI1A-209ENST00000496445 SHROOM4Q9ULL8 1493 aa29.01■■■□□ 2.23
VTI1A-209ENST00000496445 EIF4G1Q04637 1599 aaKnown RBP28.65■■■□□ 2.18
VTI1A-209ENST00000496445 CC2D2AQ9P2K1 1620 aa28.64■■■□□ 2.18
VTI1A-209ENST00000496445 CECR2Q9BXF3 1484 aa28.46■■■□□ 2.15
VTI1A-209ENST00000496445 SMARCA4P51532 1647 aa27.83■■■□□ 2.05
VTI1A-209ENST00000496445 NCAPD3P42695 1498 aa27.76■■■□□ 2.03
VTI1A-209ENST00000496445 ATAD2BQ9ULI0 1458 aa27.73■■■□□ 2.03
VTI1A-209ENST00000496445 BAZ1AQ9NRL2 1556 aaPredicted RBP27.69■■■□□ 2.02
VTI1A-209ENST00000496445 SMARCA2P51531 1590 aa27.67■■■□□ 2.02
VTI1A-209ENST00000496445 HMGXB3Q12766 1538 aa27.65■■■□□ 2.02
VTI1A-209ENST00000496445 PEG3Q9GZU2 1588 aa27.57■■■□□ 2
VTI1A-209ENST00000496445 MROH2BQ7Z745 1585 aa27.52■■■□□ 2
VTI1A-209ENST00000496445 BAZ1BQ9UIG0 1483 aaKnown RBP27.47■■□□□ 1.99
VTI1A-209ENST00000496445 AEBP2Q6ZN18 517 aaPredicted RBP27.45■■□□□ 1.98
VTI1A-209ENST00000496445 NESP48681 1621 aa27.28■■□□□ 1.96
VTI1A-209ENST00000496445 ERCC6Q03468 1493 aa27.26■■□□□ 1.95
VTI1A-209ENST00000496445 WIZO95785 1651 aa27.23■■□□□ 1.95
VTI1A-209ENST00000496445 CUX2O14529 1486 aa27.16■■□□□ 1.94
VTI1A-209ENST00000496445 LAMC3Q9Y6N6 1575 aa27.14■■□□□ 1.93
VTI1A-209ENST00000496445 THOC2Q8NI27 1593 aaKnown RBP27.03■■□□□ 1.92
VTI1A-209ENST00000496445 KIF21AQ7Z4S6 1674 aa27.02■■□□□ 1.92
VTI1A-209ENST00000496445 RSF1Q96T23 1441 aaPredicted RBP27■■□□□ 1.91
VTI1A-209ENST00000496445 CADPSQ9ULU8 1353 aa26.89■■□□□ 1.9
VTI1A-209ENST00000496445 TOP2AP11388 1531 aaKnown RBP26.89■■□□□ 1.89
VTI1A-209ENST00000496445 PDS5BQ9NTI5 1447 aa26.89■■□□□ 1.89
VTI1A-209ENST00000496445 DNAJC5Q9H3Z4 198 aa26.75■■□□□ 1.87
VTI1A-209ENST00000496445 MRC2Q9UBG0 1479 aa26.7■■□□□ 1.87
VTI1A-209ENST00000496445 CFTRP13569 1480 aa26.69■■□□□ 1.86
VTI1A-209ENST00000496445 WDR62O43379 1518 aa26.68■■□□□ 1.86
VTI1A-209ENST00000496445 FANCD2Q9BXW9 1451 aa26.63■■□□□ 1.85
VTI1A-209ENST00000496445 CEP164Q9UPV0 1460 aa26.63■■□□□ 1.85
VTI1A-209ENST00000496445 PRDM2Q13029 1718 aa26.59■■□□□ 1.85
VTI1A-209ENST00000496445 CCDC88BA6NC98 1476 aa26.54■■□□□ 1.84
VTI1A-209ENST00000496445 URB2Q14146 1524 aaKnown RBP26.44■■□□□ 1.82
VTI1A-209ENST00000496445 CHIC1Q5VXU3 224 aa26.43■■□□□ 1.82
VTI1A-209ENST00000496445 TOPBP1Q92547 1522 aa26.18■■□□□ 1.78
VTI1A-209ENST00000496445 DNMBPQ6XZF7 1577 aa26.13■■□□□ 1.77
VTI1A-209ENST00000496445 IFT140Q96RY7 1462 aa26.09■■□□□ 1.77
VTI1A-209ENST00000496445 ABCC8Q09428 1581 aa26.07■■□□□ 1.76
VTI1A-209ENST00000496445 ZNF608Q9ULD9 1512 aaPredicted RBP26.05■■□□□ 1.76
VTI1A-209ENST00000496445 EIF4G3O43432 1585 aaKnown RBP25.99■■□□□ 1.75
VTI1A-209ENST00000496445 TARBP1Q13395 1621 aaKnown RBP25.98■■□□□ 1.75
VTI1A-209ENST00000496445 POLA1P09884 1462 aaPredicted RBP25.93■■□□□ 1.74
VTI1A-209ENST00000496445 SUPT5HO00267 1087 aaKnown RBP25.88■■□□□ 1.73
VTI1A-209ENST00000496445 CUX1P39880 1505 aa25.84■■□□□ 1.73
VTI1A-209ENST00000496445 OSCARQ8IYS5 282 aa25.84■■□□□ 1.73
VTI1A-209ENST00000496445 RAD54L2Q9Y4B4 1467 aa25.81■■□□□ 1.72
VTI1A-209ENST00000496445 AQRO60306 1485 aaKnown RBP eCLIP25.8■■□□□ 1.72
VTI1A-209ENST00000496445 FGD5Q6ZNL6 1462 aa25.8■■□□□ 1.72
VTI1A-209ENST00000496445 CHD1O14646 1710 aa25.76■■□□□ 1.71
VTI1A-209ENST00000496445 SOGA1O94964 1423 aa25.74■■□□□ 1.71
VTI1A-209ENST00000496445 WDR97A6NE52 1622 aa25.73■■□□□ 1.71
VTI1A-209ENST00000496445 TRIM41Q8WV44 630 aa25.67■■□□□ 1.7
VTI1A-209ENST00000496445 TDRD9Q8NDG6 1382 aaKnown RBP25.66■■□□□ 1.7
VTI1A-209ENST00000496445 RIMBP3CA6NJZ7 1639 aa25.66■■□□□ 1.7
VTI1A-209ENST00000496445 RIMBP3BA6NNM3 1639 aa25.66■■□□□ 1.7
VTI1A-209ENST00000496445 RIMBP3Q9UFD9 1639 aa25.66■■□□□ 1.7
VTI1A-209ENST00000496445 SNAPC4Q5SXM2 1469 aa25.6■■□□□ 1.69
VTI1A-209ENST00000496445 PBRM1Q86U86 1689 aa25.57■■□□□ 1.68
VTI1A-209ENST00000496445 ARHGEF11O15085 1522 aa25.57■■□□□ 1.68
VTI1A-209ENST00000496445 BIVM-ERCC5R4GMW8 1640 aa25.55■■□□□ 1.68
VTI1A-209ENST00000496445 ABCA5Q8WWZ7 1642 aa25.53■■□□□ 1.68
VTI1A-209ENST00000496445 GRIN2BQ13224 1484 aa25.53■■□□□ 1.68
VTI1A-209ENST00000496445 ABCA10Q8WWZ4 1543 aa25.53■■□□□ 1.68
VTI1A-209ENST00000496445 MAGI1Q96QZ7 1491 aaPredicted RBP25.52■■□□□ 1.68
VTI1A-209ENST00000496445 SYNJ1O43426 1573 aa25.52■■□□□ 1.68
VTI1A-209ENST00000496445 TOP2BQ02880 1626 aa25.52■■□□□ 1.68
VTI1A-209ENST00000496445 GAPVD1Q14C86 1478 aa25.47■■□□□ 1.67
VTI1A-209ENST00000496445 FBLN2P98095 1184 aa25.47■■□□□ 1.67
VTI1A-209ENST00000496445 WRNQ14191 1432 aaPredicted RBP eCLIP25.46■■□□□ 1.67
VTI1A-209ENST00000496445 CLASP1Q7Z460 1538 aa25.44■■□□□ 1.66
VTI1A-209ENST00000496445 SYNJ2O15056 1496 aa25.42■■□□□ 1.66
VTI1A-209ENST00000496445 ARAP1Q96P48 1450 aa25.34■■□□□ 1.65
VTI1A-209ENST00000496445 CHMP7Q8WUX9 453 aaPredicted RBP25.34■■□□□ 1.65
VTI1A-209ENST00000496445 ADAMTS12P58397 1594 aa25.31■■□□□ 1.64
VTI1A-209ENST00000496445 CYB5RLQ6IPT4 315 aa25.23■■□□□ 1.63
VTI1A-209ENST00000496445 GRIN2AQ12879 1464 aa25.22■■□□□ 1.63
VTI1A-209ENST00000496445 ERICH3Q5RHP9 1530 aa25.22■■□□□ 1.63
VTI1A-209ENST00000496445 CEP170Q5SW79 1584 aa25.18■■□□□ 1.62
VTI1A-209ENST00000496445 FHAD1B1AJZ9 1412 aa25.15■■□□□ 1.62
VTI1A-209ENST00000496445 NUP160Q12769 1436 aa25.13■■□□□ 1.61
VTI1A-209ENST00000496445 ERCC6L2Q5T890 1561 aa25.07■■□□□ 1.6
VTI1A-209ENST00000496445 SHROOM2Q13796 1616 aa25.06■■□□□ 1.6
VTI1A-209ENST00000496445 RUSC2Q8N2Y8 1516 aa24.96■■□□□ 1.59
VTI1A-209ENST00000496445 CUL7Q14999 1698 aa24.94■■□□□ 1.58
VTI1A-209ENST00000496445 KIF27Q86VH2 1401 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms