RNA–Protein interactions for RNA: ENST00000495460.1

NUP58-214, Transcript of nucleoporin 58, humanhuman

TSL 5

Gene NUP58, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP58-214ENST00000495460 NISCHQ9Y2I1 1504 aa37.94■■■■□ 3.66
NUP58-214ENST00000495460 AEBP2Q6ZN18 517 aaPredicted RBP37.81■■■■□ 3.64
NUP58-214ENST00000495460 CHIC1Q5VXU3 224 aa35.41■■■■□ 3.26
NUP58-214ENST00000495460 CCDC180Q9P1Z9 1646 aa34.14■■■■□ 3.06
NUP58-214ENST00000495460 ABCC9O60706 1549 aa34.06■■■■□ 3.04
NUP58-214ENST00000495460 RB1CC1Q8TDY2 1594 aa32.53■■■□□ 2.8
NUP58-214ENST00000495460 NACADO15069 1562 aa32.34■■■□□ 2.77
NUP58-214ENST00000495460 DNAJC5BQ9UF47 199 aa32.15■■■□□ 2.74
NUP58-214ENST00000495460 SENP3Q9H4L4 574 aaPredicted RBP32.08■■■□□ 2.73
NUP58-214ENST00000495460 MYO15BQ96JP2 1530 aa32■■■□□ 2.71
NUP58-214ENST00000495460 DCAF8L2P0C7V8 631 aa31.87■■■□□ 2.69
NUP58-214ENST00000495460 PHF23Q9BUL5 403 aaPredicted RBP31.72■■■□□ 2.67
NUP58-214ENST00000495460 PABPN1Q86U42 306 aaKnown RBP eCLIP31.68■■■□□ 2.66
NUP58-214ENST00000495460 UNC13AQ9UPW8 1703 aa31.67■■■□□ 2.66
NUP58-214ENST00000495460 BICRAQ9NZM4 1560 aa31.55■■■□□ 2.64
NUP58-214ENST00000495460 DCAF1Q9Y4B6 1507 aa31.49■■■□□ 2.63
NUP58-214ENST00000495460 ZCCHC6Q5VYS8 1495 aaKnown RBP31.39■■■□□ 2.62
NUP58-214ENST00000495460 SHROOM4Q9ULL8 1493 aa31.34■■■□□ 2.61
NUP58-214ENST00000495460 SCRIBQ14160 1630 aa30.87■■■□□ 2.53
NUP58-214ENST00000495460 CC2D2AQ9P2K1 1620 aa30.84■■■□□ 2.53
NUP58-214ENST00000495460 CECR2Q9BXF3 1484 aa30.8■■■□□ 2.52
NUP58-214ENST00000495460 EIF4G1Q04637 1599 aaKnown RBP30.78■■■□□ 2.52
NUP58-214ENST00000495460 FOXD1Q16676 465 aa30.1■■■□□ 2.41
NUP58-214ENST00000495460 NCAPD3P42695 1498 aa29.89■■■□□ 2.38
NUP58-214ENST00000495460 DNAJC5Q9H3Z4 198 aa29.78■■■□□ 2.36
NUP58-214ENST00000495460 ATAD2BQ9ULI0 1458 aa29.68■■■□□ 2.34
NUP58-214ENST00000495460 SMARCA2P51531 1590 aa29.63■■■□□ 2.33
NUP58-214ENST00000495460 CUX2O14529 1486 aa29.62■■■□□ 2.33
NUP58-214ENST00000495460 HMGXB3Q12766 1538 aa29.61■■■□□ 2.33
NUP58-214ENST00000495460 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
NUP58-214ENST00000495460 ERCC6Q03468 1493 aa29.47■■■□□ 2.31
NUP58-214ENST00000495460 BAZ1AQ9NRL2 1556 aaPredicted RBP29.47■■■□□ 2.31
NUP58-214ENST00000495460 PEG3Q9GZU2 1588 aa29.43■■■□□ 2.3
NUP58-214ENST00000495460 BAZ1BQ9UIG0 1483 aaKnown RBP29.34■■■□□ 2.29
NUP58-214ENST00000495460 NESP48681 1621 aa29.22■■■□□ 2.27
NUP58-214ENST00000495460 LAMC3Q9Y6N6 1575 aa29.18■■■□□ 2.26
NUP58-214ENST00000495460 MROH2BQ7Z745 1585 aa29.13■■■□□ 2.25
NUP58-214ENST00000495460 PDS5BQ9NTI5 1447 aa29.04■■■□□ 2.24
NUP58-214ENST00000495460 THOC2Q8NI27 1593 aaKnown RBP29.02■■■□□ 2.24
NUP58-214ENST00000495460 CADPSQ9ULU8 1353 aa28.92■■■□□ 2.22
NUP58-214ENST00000495460 KIF21AQ7Z4S6 1674 aa28.85■■■□□ 2.21
NUP58-214ENST00000495460 WIZO95785 1651 aa28.73■■■□□ 2.19
NUP58-214ENST00000495460 MRC2Q9UBG0 1479 aa28.71■■■□□ 2.19
NUP58-214ENST00000495460 WDR62O43379 1518 aa28.67■■■□□ 2.18
NUP58-214ENST00000495460 CFTRP13569 1480 aa28.57■■■□□ 2.16
NUP58-214ENST00000495460 CEP164Q9UPV0 1460 aa28.55■■■□□ 2.16
NUP58-214ENST00000495460 RSF1Q96T23 1441 aaPredicted RBP28.55■■■□□ 2.16
NUP58-214ENST00000495460 FANCD2Q9BXW9 1451 aa28.51■■■□□ 2.15
NUP58-214ENST00000495460 TOP2AP11388 1531 aaKnown RBP28.45■■■□□ 2.15
NUP58-214ENST00000495460 URB2Q14146 1524 aaKnown RBP28.26■■■□□ 2.11
NUP58-214ENST00000495460 POTEDQ86YR6 584 aa28.24■■■□□ 2.11
NUP58-214ENST00000495460 OSCARQ8IYS5 282 aa28.24■■■□□ 2.11
NUP58-214ENST00000495460 PRDM2Q13029 1718 aa28.19■■■□□ 2.1
NUP58-214ENST00000495460 TRIM41Q8WV44 630 aa28.14■■■□□ 2.1
NUP58-214ENST00000495460 CCDC88BA6NC98 1476 aa28.13■■■□□ 2.09
NUP58-214ENST00000495460 MSH5O43196 834 aa28.12■■■□□ 2.09
NUP58-214ENST00000495460 ABCC8Q09428 1581 aa28.05■■■□□ 2.08
NUP58-214ENST00000495460 IFT140Q96RY7 1462 aa28.04■■■□□ 2.08
NUP58-214ENST00000495460 PLPPR3Q6T4P5 718 aa28.04■■■□□ 2.08
NUP58-214ENST00000495460 PIAS4Q8N2W9 510 aaPredicted RBP27.97■■■□□ 2.07
NUP58-214ENST00000495460 PPP6R1Q9UPN7 881 aa27.95■■■□□ 2.06
NUP58-214ENST00000495460 TOPBP1Q92547 1522 aa27.95■■■□□ 2.06
NUP58-214ENST00000495460 ZNF608Q9ULD9 1512 aaPredicted RBP27.89■■■□□ 2.06
NUP58-214ENST00000495460 DNMBPQ6XZF7 1577 aa27.86■■■□□ 2.05
NUP58-214ENST00000495460 ADRA2BP18089 450 aa27.81■■■□□ 2.04
NUP58-214ENST00000495460 RIMBP3CA6NJZ7 1639 aa27.74■■■□□ 2.03
NUP58-214ENST00000495460 RIMBP3BA6NNM3 1639 aa27.74■■■□□ 2.03
NUP58-214ENST00000495460 RIMBP3Q9UFD9 1639 aa27.74■■■□□ 2.03
NUP58-214ENST00000495460 TARBP1Q13395 1621 aaKnown RBP27.74■■■□□ 2.03
NUP58-214ENST00000495460 EIF4G3O43432 1585 aaKnown RBP27.73■■■□□ 2.03
NUP58-214ENST00000495460 ARHGEF11O15085 1522 aa27.68■■■□□ 2.02
NUP58-214ENST00000495460 POLA1P09884 1462 aaPredicted RBP27.65■■■□□ 2.02
NUP58-214ENST00000495460 AQRO60306 1485 aaKnown RBP eCLIP27.64■■■□□ 2.022e-6■■□□□ 12.6
NUP58-214ENST00000495460 WDR97A6NE52 1622 aa27.59■■■□□ 2.01
NUP58-214ENST00000495460 SOGA1O94964 1423 aa27.56■■■□□ 2
NUP58-214ENST00000495460 CHD1O14646 1710 aa27.52■■■□□ 2
NUP58-214ENST00000495460 RAD54L2Q9Y4B4 1467 aa27.48■■□□□ 1.99
NUP58-214ENST00000495460 CYB5RLQ6IPT4 315 aa27.47■■□□□ 1.99
NUP58-214ENST00000495460 TDRD9Q8NDG6 1382 aaKnown RBP27.45■■□□□ 1.98
NUP58-214ENST00000495460 FBLN2P98095 1184 aa27.43■■□□□ 1.98
NUP58-214ENST00000495460 FGD5Q6ZNL6 1462 aa27.43■■□□□ 1.98
NUP58-214ENST00000495460 MAGI1Q96QZ7 1491 aaPredicted RBP27.4■■□□□ 1.98
NUP58-214ENST00000495460 CUX1P39880 1505 aa27.38■■□□□ 1.97
NUP58-214ENST00000495460 ARAP1Q96P48 1450 aa27.38■■□□□ 1.97
NUP58-214ENST00000495460 GRIN2BQ13224 1484 aa27.35■■□□□ 1.97
NUP58-214ENST00000495460 SNAPC4Q5SXM2 1469 aa27.33■■□□□ 1.97
NUP58-214ENST00000495460 CHMP7Q8WUX9 453 aaPredicted RBP27.32■■□□□ 1.96
NUP58-214ENST00000495460 CLASP1Q7Z460 1538 aa27.31■■□□□ 1.96
NUP58-214ENST00000495460 SYNJ2O15056 1496 aa27.29■■□□□ 1.96
NUP58-214ENST00000495460 SYNJ1O43426 1573 aa27.29■■□□□ 1.96
NUP58-214ENST00000495460 ABCA10Q8WWZ4 1543 aa27.21■■□□□ 1.95
NUP58-214ENST00000495460 GAPVD1Q14C86 1478 aa27.21■■□□□ 1.95
NUP58-214ENST00000495460 TRHP20396 242 aaPredicted RBP27.15■■□□□ 1.94
NUP58-214ENST00000495460 PBRM1Q86U86 1689 aa27.12■■□□□ 1.93
NUP58-214ENST00000495460 ABCA5Q8WWZ7 1642 aa27.12■■□□□ 1.93
NUP58-214ENST00000495460 WRNQ14191 1432 aaPredicted RBP eCLIP27.07■■□□□ 1.92
NUP58-214ENST00000495460 SUPT5HO00267 1087 aaKnown RBP26.99■■□□□ 1.91
NUP58-214ENST00000495460 TOP2BQ02880 1626 aa26.98■■□□□ 1.91
NUP58-214ENST00000495460 GRIN2AQ12879 1464 aa26.97■■□□□ 1.91
NUP58-214ENST00000495460 BIVM-ERCC5R4GMW8 1640 aa26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms