RNA–Protein interactions for RNA: ENST00000495355.1

YIPF4-204, Transcript of Yip1 domain family member 4, humanhuman

TSL 2

Gene YIPF4, Length 544 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF4-204ENST00000495355 NISCHQ9Y2I1 1504 aa45.34■■■■■ 4.85
YIPF4-204ENST00000495355 CCDC180Q9P1Z9 1646 aa40.6■■■■■ 4.09
YIPF4-204ENST00000495355 ABCC9O60706 1549 aa40.4■■■■■ 4.06
YIPF4-204ENST00000495355 RB1CC1Q8TDY2 1594 aa38.49■■■■□ 3.75
YIPF4-204ENST00000495355 NACADO15069 1562 aa38.29■■■■□ 3.72
YIPF4-204ENST00000495355 DCAF8L2P0C7V8 631 aa37.99■■■■□ 3.67
YIPF4-204ENST00000495355 MYO15BQ96JP2 1530 aa37.86■■■■□ 3.65
YIPF4-204ENST00000495355 DNAJC5BQ9UF47 199 aa37.8■■■■□ 3.64
YIPF4-204ENST00000495355 UNC13AQ9UPW8 1703 aa37.76■■■■□ 3.64
YIPF4-204ENST00000495355 ZCCHC6Q5VYS8 1495 aaKnown RBP37.65■■■■□ 3.62
YIPF4-204ENST00000495355 PABPN1Q86U42 306 aaKnown RBP eCLIP37.61■■■■□ 3.61
YIPF4-204ENST00000495355 BICRAQ9NZM4 1560 aa37.51■■■■□ 3.6
YIPF4-204ENST00000495355 DCAF1Q9Y4B6 1507 aa37.46■■■■□ 3.59
YIPF4-204ENST00000495355 SCRIBQ14160 1630 aa37.01■■■■□ 3.52
YIPF4-204ENST00000495355 SHROOM4Q9ULL8 1493 aa36.89■■■■□ 3.5
YIPF4-204ENST00000495355 CC2D2AQ9P2K1 1620 aa36.52■■■■□ 3.44
YIPF4-204ENST00000495355 EIF4G1Q04637 1599 aaKnown RBP36.5■■■■□ 3.43
YIPF4-204ENST00000495355 CECR2Q9BXF3 1484 aa36.35■■■■□ 3.41
YIPF4-204ENST00000495355 NCAPD3P42695 1498 aa35.38■■■■□ 3.25
YIPF4-204ENST00000495355 SMARCA4P51532 1647 aa35.34■■■■□ 3.25
YIPF4-204ENST00000495355 ATAD2BQ9ULI0 1458 aa35.32■■■■□ 3.24
YIPF4-204ENST00000495355 SMARCA2P51531 1590 aa35.17■■■■□ 3.22
YIPF4-204ENST00000495355 HMGXB3Q12766 1538 aa35.14■■■■□ 3.22
YIPF4-204ENST00000495355 BAZ1AQ9NRL2 1556 aaPredicted RBP35.13■■■■□ 3.21
YIPF4-204ENST00000495355 PEG3Q9GZU2 1588 aa35.01■■■■□ 3.2
YIPF4-204ENST00000495355 MROH2BQ7Z745 1585 aa34.98■■■■□ 3.19
YIPF4-204ENST00000495355 BAZ1BQ9UIG0 1483 aaKnown RBP34.92■■■■□ 3.18
YIPF4-204ENST00000495355 NESP48681 1621 aa34.81■■■■□ 3.16
YIPF4-204ENST00000495355 ERCC6Q03468 1493 aa34.78■■■■□ 3.16
YIPF4-204ENST00000495355 CUX2O14529 1486 aa34.71■■■■□ 3.15
YIPF4-204ENST00000495355 WIZO95785 1651 aa34.56■■■■□ 3.12
YIPF4-204ENST00000495355 LAMC3Q9Y6N6 1575 aa34.53■■■■□ 3.12
YIPF4-204ENST00000495355 DNAJC5Q9H3Z4 198 aa34.46■■■■□ 3.11
YIPF4-204ENST00000495355 THOC2Q8NI27 1593 aaKnown RBP34.45■■■■□ 3.1
YIPF4-204ENST00000495355 KIF21AQ7Z4S6 1674 aa34.37■■■■□ 3.09
YIPF4-204ENST00000495355 RSF1Q96T23 1441 aaPredicted RBP34.29■■■■□ 3.08
YIPF4-204ENST00000495355 CADPSQ9ULU8 1353 aa34.27■■■■□ 3.08
YIPF4-204ENST00000495355 AEBP2Q6ZN18 517 aaPredicted RBP34.27■■■■□ 3.08
YIPF4-204ENST00000495355 PDS5BQ9NTI5 1447 aa34.25■■■■□ 3.07
YIPF4-204ENST00000495355 TOP2AP11388 1531 aaKnown RBP34.1■■■■□ 3.05
YIPF4-204ENST00000495355 MRC2Q9UBG0 1479 aa34.01■■■■□ 3.04
YIPF4-204ENST00000495355 WDR62O43379 1518 aa33.98■■■■□ 3.03
YIPF4-204ENST00000495355 CFTRP13569 1480 aa33.97■■■■□ 3.03
YIPF4-204ENST00000495355 FANCD2Q9BXW9 1451 aa33.9■■■■□ 3.02
YIPF4-204ENST00000495355 CEP164Q9UPV0 1460 aa33.9■■■■□ 3.02
YIPF4-204ENST00000495355 CCDC88BA6NC98 1476 aa33.71■■■□□ 2.99
YIPF4-204ENST00000495355 URB2Q14146 1524 aaKnown RBP33.68■■■□□ 2.98
YIPF4-204ENST00000495355 PRDM2Q13029 1718 aa33.66■■■□□ 2.98
YIPF4-204ENST00000495355 TOPBP1Q92547 1522 aa33.31■■■□□ 2.92
YIPF4-204ENST00000495355 ZNF608Q9ULD9 1512 aaPredicted RBP33.23■■■□□ 2.91
YIPF4-204ENST00000495355 IFT140Q96RY7 1462 aa33.22■■■□□ 2.91
YIPF4-204ENST00000495355 DNMBPQ6XZF7 1577 aa33.2■■■□□ 2.91
YIPF4-204ENST00000495355 ABCC8Q09428 1581 aa33.14■■■□□ 2.9
YIPF4-204ENST00000495355 OSCARQ8IYS5 282 aa33.06■■■□□ 2.88
YIPF4-204ENST00000495355 TARBP1Q13395 1621 aaKnown RBP33.05■■■□□ 2.88
YIPF4-204ENST00000495355 EIF4G3O43432 1585 aaKnown RBP33.04■■■□□ 2.88
YIPF4-204ENST00000495355 POLA1P09884 1462 aaPredicted RBP32.99■■■□□ 2.87
YIPF4-204ENST00000495355 TRIM41Q8WV44 630 aa32.97■■■□□ 2.87
YIPF4-204ENST00000495355 AQRO60306 1485 aaKnown RBP eCLIP32.91■■■□□ 2.86
YIPF4-204ENST00000495355 RAD54L2Q9Y4B4 1467 aa32.87■■■□□ 2.85
YIPF4-204ENST00000495355 CUX1P39880 1505 aa32.84■■■□□ 2.85
YIPF4-204ENST00000495355 FGD5Q6ZNL6 1462 aa32.8■■■□□ 2.84
YIPF4-204ENST00000495355 SUPT5HO00267 1087 aaKnown RBP32.78■■■□□ 2.84
YIPF4-204ENST00000495355 SOGA1O94964 1423 aa32.77■■■□□ 2.84
YIPF4-204ENST00000495355 CHD1O14646 1710 aa32.76■■■□□ 2.83
YIPF4-204ENST00000495355 RIMBP3CA6NJZ7 1639 aa32.76■■■□□ 2.83
YIPF4-204ENST00000495355 RIMBP3BA6NNM3 1639 aa32.76■■■□□ 2.83
YIPF4-204ENST00000495355 RIMBP3Q9UFD9 1639 aa32.76■■■□□ 2.83
YIPF4-204ENST00000495355 TDRD9Q8NDG6 1382 aaKnown RBP32.71■■■□□ 2.83
YIPF4-204ENST00000495355 ARHGEF11O15085 1522 aa32.67■■■□□ 2.82
YIPF4-204ENST00000495355 WDR97A6NE52 1622 aa32.64■■■□□ 2.82
YIPF4-204ENST00000495355 SNAPC4Q5SXM2 1469 aa32.58■■■□□ 2.81
YIPF4-204ENST00000495355 FBLN2P98095 1184 aa32.51■■■□□ 2.79
YIPF4-204ENST00000495355 GRIN2BQ13224 1484 aa32.48■■■□□ 2.79
YIPF4-204ENST00000495355 CHIC1Q5VXU3 224 aa32.47■■■□□ 2.79
YIPF4-204ENST00000495355 MAGI1Q96QZ7 1491 aaPredicted RBP32.47■■■□□ 2.79
YIPF4-204ENST00000495355 ABCA10Q8WWZ4 1543 aa32.44■■■□□ 2.78
YIPF4-204ENST00000495355 PBRM1Q86U86 1689 aa32.43■■■□□ 2.78
YIPF4-204ENST00000495355 ABCA5Q8WWZ7 1642 aa32.42■■■□□ 2.78
YIPF4-204ENST00000495355 CLASP1Q7Z460 1538 aa32.41■■■□□ 2.78
YIPF4-204ENST00000495355 GAPVD1Q14C86 1478 aa32.39■■■□□ 2.78
YIPF4-204ENST00000495355 ARAP1Q96P48 1450 aa32.39■■■□□ 2.78
YIPF4-204ENST00000495355 SYNJ2O15056 1496 aa32.36■■■□□ 2.77
YIPF4-204ENST00000495355 BIVM-ERCC5R4GMW8 1640 aa32.36■■■□□ 2.77
YIPF4-204ENST00000495355 SYNJ1O43426 1573 aa32.35■■■□□ 2.77
YIPF4-204ENST00000495355 TOP2BQ02880 1626 aa32.33■■■□□ 2.77
YIPF4-204ENST00000495355 CHMP7Q8WUX9 453 aaPredicted RBP32.31■■■□□ 2.76
YIPF4-204ENST00000495355 CYB5RLQ6IPT4 315 aa32.3■■■□□ 2.76
YIPF4-204ENST00000495355 WRNQ14191 1432 aaPredicted RBP eCLIP32.29■■■□□ 2.76
YIPF4-204ENST00000495355 ADAMTS12P58397 1594 aa32.15■■■□□ 2.74
YIPF4-204ENST00000495355 GRIN2AQ12879 1464 aa32.1■■■□□ 2.73
YIPF4-204ENST00000495355 CEP170Q5SW79 1584 aa32.03■■■□□ 2.72
YIPF4-204ENST00000495355 NUP160Q12769 1436 aa32.01■■■□□ 2.72
YIPF4-204ENST00000495355 ERICH3Q5RHP9 1530 aa32.01■■■□□ 2.72
YIPF4-204ENST00000495355 FHAD1B1AJZ9 1412 aa31.99■■■□□ 2.71
YIPF4-204ENST00000495355 ERCC6L2Q5T890 1561 aa31.96■■■□□ 2.71
YIPF4-204ENST00000495355 SHROOM2Q13796 1616 aa31.87■■■□□ 2.69
YIPF4-204ENST00000495355 TRHP20396 242 aaPredicted RBP31.81■■■□□ 2.68
YIPF4-204ENST00000495355 RUSC2Q8N2Y8 1516 aa31.7■■■□□ 2.67
YIPF4-204ENST00000495355 IGF1RP08069 1367 aa31.66■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 144.8 ms