RNA–Protein interactions for RNA: ENST00000494893.5

SNX17-209, Transcript of sorting nexin 17, humanhuman

TSL 2

Gene SNX17, Length 966 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-209ENST00000494893 NISCHQ9Y2I1 1504 aa41.76■■■■■ 4.28
SNX17-209ENST00000494893 CCDC180Q9P1Z9 1646 aa37.05■■■■□ 3.52
SNX17-209ENST00000494893 ABCC9O60706 1549 aa36.29■■■■□ 3.4
SNX17-209ENST00000494893 RB1CC1Q8TDY2 1594 aa34.85■■■■□ 3.17
SNX17-209ENST00000494893 NACADO15069 1562 aa34.83■■■■□ 3.17
SNX17-209ENST00000494893 ZCCHC6Q5VYS8 1495 aaKnown RBP34.81■■■■□ 3.16
SNX17-209ENST00000494893 DCAF8L2P0C7V8 631 aa34.79■■■■□ 3.16
SNX17-209ENST00000494893 MYO15BQ96JP2 1530 aa34.65■■■■□ 3.14
SNX17-209ENST00000494893 DCAF1Q9Y4B6 1507 aa34.53■■■■□ 3.12
SNX17-209ENST00000494893 UNC13AQ9UPW8 1703 aa34.1■■■■□ 3.05
SNX17-209ENST00000494893 PABPN1Q86U42 306 aaKnown RBP eCLIP33.92■■■■□ 3.02
SNX17-209ENST00000494893 BICRAQ9NZM4 1560 aa33.92■■■■□ 3.02
SNX17-209ENST00000494893 SCRIBQ14160 1630 aa33.86■■■■□ 3.01
SNX17-209ENST00000494893 SHROOM4Q9ULL8 1493 aa33.44■■■□□ 2.94
SNX17-209ENST00000494893 DNAJC5BQ9UF47 199 aa33.37■■■□□ 2.93
SNX17-209ENST00000494893 EIF4G1Q04637 1599 aaKnown RBP32.96■■■□□ 2.87
SNX17-209ENST00000494893 CC2D2AQ9P2K1 1620 aa32.8■■■□□ 2.84
SNX17-209ENST00000494893 CECR2Q9BXF3 1484 aa32.59■■■□□ 2.81
SNX17-209ENST00000494893 SMARCA4P51532 1647 aa32.39■■■□□ 2.78
SNX17-209ENST00000494893 BAZ1AQ9NRL2 1556 aaPredicted RBP32.32■■■□□ 2.76
SNX17-209ENST00000494893 MROH2BQ7Z745 1585 aa32.23■■■□□ 2.75
SNX17-209ENST00000494893 ATAD2BQ9ULI0 1458 aa32.23■■■□□ 2.75
SNX17-209ENST00000494893 NCAPD3P42695 1498 aa32.18■■■□□ 2.74
SNX17-209ENST00000494893 SMARCA2P51531 1590 aa32.11■■■□□ 2.73
SNX17-209ENST00000494893 PEG3Q9GZU2 1588 aa32.07■■■□□ 2.72
SNX17-209ENST00000494893 HMGXB3Q12766 1538 aa32.01■■■□□ 2.72
SNX17-209ENST00000494893 BAZ1BQ9UIG0 1483 aaKnown RBP31.91■■■□□ 2.7
SNX17-209ENST00000494893 RSF1Q96T23 1441 aaPredicted RBP31.85■■■□□ 2.69
SNX17-209ENST00000494893 WIZO95785 1651 aa31.84■■■□□ 2.69
SNX17-209ENST00000494893 TOP2AP11388 1531 aaKnown RBP31.49■■■□□ 2.63
SNX17-209ENST00000494893 NESP48681 1621 aa31.45■■■□□ 2.62
SNX17-209ENST00000494893 LAMC3Q9Y6N6 1575 aa31.28■■■□□ 2.6
SNX17-209ENST00000494893 CADPSQ9ULU8 1353 aa31.23■■■□□ 2.59
SNX17-209ENST00000494893 ERCC6Q03468 1493 aa31.19■■■□□ 2.58
SNX17-209ENST00000494893 CCDC88BA6NC98 1476 aa31.15■■■□□ 2.58
SNX17-209ENST00000494893 CFTRP13569 1480 aa31.08■■■□□ 2.57
SNX17-209ENST00000494893 PDS5BQ9NTI5 1447 aa31.05■■■□□ 2.56
SNX17-209ENST00000494893 KIF21AQ7Z4S6 1674 aa31.02■■■□□ 2.56
SNX17-209ENST00000494893 SUPT5HO00267 1087 aaKnown RBP31.01■■■□□ 2.55
SNX17-209ENST00000494893 THOC2Q8NI27 1593 aaKnown RBP30.94■■■□□ 2.54
SNX17-209ENST00000494893 CUX2O14529 1486 aa30.88■■■□□ 2.53
SNX17-209ENST00000494893 FANCD2Q9BXW9 1451 aa30.88■■■□□ 2.53
SNX17-209ENST00000494893 CEP164Q9UPV0 1460 aa30.81■■■□□ 2.52
SNX17-209ENST00000494893 MRC2Q9UBG0 1479 aa30.77■■■□□ 2.52
SNX17-209ENST00000494893 PRDM2Q13029 1718 aa30.76■■■□□ 2.51
SNX17-209ENST00000494893 WDR62O43379 1518 aa30.69■■■□□ 2.5
SNX17-209ENST00000494893 URB2Q14146 1524 aaKnown RBP30.62■■■□□ 2.49
SNX17-209ENST00000494893 TOPBP1Q92547 1522 aa30.4■■■□□ 2.46
SNX17-209ENST00000494893 DNMBPQ6XZF7 1577 aa30.35■■■□□ 2.45
SNX17-209ENST00000494893 ABCC8Q09428 1581 aa30.31■■■□□ 2.44
SNX17-209ENST00000494893 CUX1P39880 1505 aa30.22■■■□□ 2.43
SNX17-209ENST00000494893 IFT140Q96RY7 1462 aa30.17■■■□□ 2.42
SNX17-209ENST00000494893 POLA1P09884 1462 aaPredicted RBP30.16■■■□□ 2.42
SNX17-209ENST00000494893 ZNF608Q9ULD9 1512 aaPredicted RBP30.11■■■□□ 2.41
SNX17-209ENST00000494893 TARBP1Q13395 1621 aaKnown RBP30.08■■■□□ 2.41
SNX17-209ENST00000494893 FGD5Q6ZNL6 1462 aa30.08■■■□□ 2.41
SNX17-209ENST00000494893 RAD54L2Q9Y4B4 1467 aa30.05■■■□□ 2.4
SNX17-209ENST00000494893 SOGA1O94964 1423 aa29.99■■■□□ 2.39
SNX17-209ENST00000494893 WRNQ14191 1432 aaPredicted RBP eCLIP29.98■■■□□ 2.39
SNX17-209ENST00000494893 SYNJ1O43426 1573 aa29.96■■■□□ 2.39
SNX17-209ENST00000494893 EIF4G3O43432 1585 aaKnown RBP29.94■■■□□ 2.38
SNX17-209ENST00000494893 DNAJC5Q9H3Z4 198 aa29.92■■■□□ 2.38
SNX17-209ENST00000494893 TOP2BQ02880 1626 aa29.92■■■□□ 2.38
SNX17-209ENST00000494893 BIVM-ERCC5R4GMW8 1640 aa29.92■■■□□ 2.38
SNX17-209ENST00000494893 AQRO60306 1485 aaKnown RBP eCLIP29.92■■■□□ 2.383e-7■■■■■ 31
SNX17-209ENST00000494893 TDRD9Q8NDG6 1382 aaKnown RBP29.86■■■□□ 2.37
SNX17-209ENST00000494893 WDR97A6NE52 1622 aa29.84■■■□□ 2.37
SNX17-209ENST00000494893 ABCA10Q8WWZ4 1543 aa29.79■■■□□ 2.36
SNX17-209ENST00000494893 ABCA5Q8WWZ7 1642 aa29.67■■■□□ 2.34
SNX17-209ENST00000494893 GAPVD1Q14C86 1478 aa29.65■■■□□ 2.34
SNX17-209ENST00000494893 GRIN2BQ13224 1484 aa29.64■■■□□ 2.34
SNX17-209ENST00000494893 SNAPC4Q5SXM2 1469 aa29.62■■■□□ 2.33
SNX17-209ENST00000494893 OSCARQ8IYS5 282 aa29.58■■■□□ 2.33
SNX17-209ENST00000494893 PBRM1Q86U86 1689 aa29.56■■■□□ 2.32
SNX17-209ENST00000494893 MAGI1Q96QZ7 1491 aaPredicted RBP29.55■■■□□ 2.32
SNX17-209ENST00000494893 CHD1O14646 1710 aa29.53■■■□□ 2.32
SNX17-209ENST00000494893 FBLN2P98095 1184 aa29.46■■■□□ 2.31
SNX17-209ENST00000494893 SYNJ2O15056 1496 aa29.44■■■□□ 2.3
SNX17-209ENST00000494893 ERICH3Q5RHP9 1530 aa29.4■■■□□ 2.3
SNX17-209ENST00000494893 CHMP7Q8WUX9 453 aaPredicted RBP29.38■■■□□ 2.29
SNX17-209ENST00000494893 ADAMTS12P58397 1594 aa29.38■■■□□ 2.29
SNX17-209ENST00000494893 KIF27Q86VH2 1401 aa29.32■■■□□ 2.28
SNX17-209ENST00000494893 FHAD1B1AJZ9 1412 aa29.3■■■□□ 2.28
SNX17-209ENST00000494893 GRIN2AQ12879 1464 aa29.28■■■□□ 2.28
SNX17-209ENST00000494893 IGF1RP08069 1367 aa29.27■■■□□ 2.28
SNX17-209ENST00000494893 CLASP1Q7Z460 1538 aa29.26■■■□□ 2.27
SNX17-209ENST00000494893 TRIM41Q8WV44 630 aa29.24■■■□□ 2.27
SNX17-209ENST00000494893 RUSC2Q8N2Y8 1516 aa29.19■■■□□ 2.26
SNX17-209ENST00000494893 NUP160Q12769 1436 aa29.17■■■□□ 2.26
SNX17-209ENST00000494893 RIMBP3CA6NJZ7 1639 aa29.16■■■□□ 2.26
SNX17-209ENST00000494893 RIMBP3BA6NNM3 1639 aa29.16■■■□□ 2.26
SNX17-209ENST00000494893 RIMBP3Q9UFD9 1639 aa29.16■■■□□ 2.26
SNX17-209ENST00000494893 ARHGEF11O15085 1522 aa29.16■■■□□ 2.26
SNX17-209ENST00000494893 CEP170Q5SW79 1584 aa29.16■■■□□ 2.26
SNX17-209ENST00000494893 CUL7Q14999 1698 aa29.11■■■□□ 2.25
SNX17-209ENST00000494893 CARMIL1Q5VZK9 1371 aa29.05■■■□□ 2.24
SNX17-209ENST00000494893 CHIC1Q5VXU3 224 aa29.01■■■□□ 2.23
SNX17-209ENST00000494893 ARAP1Q96P48 1450 aa28.97■■■□□ 2.23
SNX17-209ENST00000494893 SHROOM2Q13796 1616 aa28.94■■■□□ 2.22
SNX17-209ENST00000494893 ERCC6L2Q5T890 1561 aa28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 279.8 ms