RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 NISCHQ9Y2I1 1504 aa29.33■■■□□ 2.29
VTI1A-208ENST00000494728 CCDC180Q9P1Z9 1646 aa26.33■■□□□ 1.81
VTI1A-208ENST00000494728 ABCC9O60706 1549 aa26.1■■□□□ 1.77
VTI1A-208ENST00000494728 RB1CC1Q8TDY2 1594 aa24.9■■□□□ 1.58
VTI1A-208ENST00000494728 NACADO15069 1562 aa24.76■■□□□ 1.55
VTI1A-208ENST00000494728 UNC13AQ9UPW8 1703 aa24.56■■□□□ 1.52
VTI1A-208ENST00000494728 DCAF8L2P0C7V8 631 aa24.5■■□□□ 1.51
VTI1A-208ENST00000494728 MYO15BQ96JP2 1530 aa24.45■■□□□ 1.5
VTI1A-208ENST00000494728 ZCCHC6Q5VYS8 1495 aaKnown RBP24.38■■□□□ 1.49
VTI1A-208ENST00000494728 DNAJC5BQ9UF47 199 aa24.33■■□□□ 1.49
VTI1A-208ENST00000494728 BICRAQ9NZM4 1560 aa24.29■■□□□ 1.48
VTI1A-208ENST00000494728 PABPN1Q86U42 306 aaKnown RBP eCLIP24.25■■□□□ 1.47
VTI1A-208ENST00000494728 DCAF1Q9Y4B6 1507 aa24.21■■□□□ 1.47
VTI1A-208ENST00000494728 SCRIBQ14160 1630 aa24.01■■□□□ 1.43
VTI1A-208ENST00000494728 SHROOM4Q9ULL8 1493 aa23.83■■□□□ 1.41
VTI1A-208ENST00000494728 CC2D2AQ9P2K1 1620 aa23.64■■□□□ 1.38
VTI1A-208ENST00000494728 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
VTI1A-208ENST00000494728 CECR2Q9BXF3 1484 aa23.47■■□□□ 1.35
VTI1A-208ENST00000494728 SMARCA4P51532 1647 aa22.91■■□□□ 1.26
VTI1A-208ENST00000494728 NCAPD3P42695 1498 aa22.82■■□□□ 1.24
VTI1A-208ENST00000494728 ATAD2BQ9ULI0 1458 aa22.81■■□□□ 1.24
VTI1A-208ENST00000494728 SMARCA2P51531 1590 aa22.75■■□□□ 1.23
VTI1A-208ENST00000494728 HMGXB3Q12766 1538 aa22.74■■□□□ 1.23
VTI1A-208ENST00000494728 BAZ1AQ9NRL2 1556 aaPredicted RBP22.74■■□□□ 1.23
VTI1A-208ENST00000494728 PEG3Q9GZU2 1588 aa22.67■■□□□ 1.22
VTI1A-208ENST00000494728 MROH2BQ7Z745 1585 aa22.64■■□□□ 1.22
VTI1A-208ENST00000494728 BAZ1BQ9UIG0 1483 aaKnown RBP22.59■■□□□ 1.21
VTI1A-208ENST00000494728 NESP48681 1621 aa22.52■■□□□ 1.2
VTI1A-208ENST00000494728 ERCC6Q03468 1493 aa22.46■■□□□ 1.19
VTI1A-208ENST00000494728 WIZO95785 1651 aa22.43■■□□□ 1.18
VTI1A-208ENST00000494728 CUX2O14529 1486 aa22.39■■□□□ 1.17
VTI1A-208ENST00000494728 LAMC3Q9Y6N6 1575 aa22.33■■□□□ 1.17
VTI1A-208ENST00000494728 THOC2Q8NI27 1593 aaKnown RBP22.33■■□□□ 1.16
VTI1A-208ENST00000494728 KIF21AQ7Z4S6 1674 aa22.32■■□□□ 1.16
VTI1A-208ENST00000494728 RSF1Q96T23 1441 aaPredicted RBP22.16■■□□□ 1.14
VTI1A-208ENST00000494728 DNAJC5Q9H3Z4 198 aa22.11■■□□□ 1.13
VTI1A-208ENST00000494728 CADPSQ9ULU8 1353 aa22.11■■□□□ 1.13
VTI1A-208ENST00000494728 TOP2AP11388 1531 aaKnown RBP22.1■■□□□ 1.13
VTI1A-208ENST00000494728 PDS5BQ9NTI5 1447 aa22.09■■□□□ 1.13
VTI1A-208ENST00000494728 MRC2Q9UBG0 1479 aa21.98■■□□□ 1.11
VTI1A-208ENST00000494728 WDR62O43379 1518 aa21.98■■□□□ 1.11
VTI1A-208ENST00000494728 CFTRP13569 1480 aa21.94■■□□□ 1.1
VTI1A-208ENST00000494728 CEP164Q9UPV0 1460 aa21.92■■□□□ 1.1
VTI1A-208ENST00000494728 AEBP2Q6ZN18 517 aaPredicted RBP21.92■■□□□ 1.1
VTI1A-208ENST00000494728 PRDM2Q13029 1718 aa21.92■■□□□ 1.1
VTI1A-208ENST00000494728 FANCD2Q9BXW9 1451 aa21.91■■□□□ 1.1
VTI1A-208ENST00000494728 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
VTI1A-208ENST00000494728 URB2Q14146 1524 aaKnown RBP21.78■■□□□ 1.08
VTI1A-208ENST00000494728 TOPBP1Q92547 1522 aa21.55■■□□□ 1.04
VTI1A-208ENST00000494728 DNMBPQ6XZF7 1577 aa21.49■■□□□ 1.03
VTI1A-208ENST00000494728 ZNF608Q9ULD9 1512 aaPredicted RBP21.49■■□□□ 1.03
VTI1A-208ENST00000494728 IFT140Q96RY7 1462 aa21.45■■□□□ 1.02
VTI1A-208ENST00000494728 EIF4G3O43432 1585 aaKnown RBP21.43■■□□□ 1.02
VTI1A-208ENST00000494728 TARBP1Q13395 1621 aaKnown RBP21.41■■□□□ 1.02
VTI1A-208ENST00000494728 ABCC8Q09428 1581 aa21.39■■□□□ 1.01
VTI1A-208ENST00000494728 POLA1P09884 1462 aaPredicted RBP21.34■■□□□ 1.01
VTI1A-208ENST00000494728 CHD1O14646 1710 aa21.28■■□□□ 1
VTI1A-208ENST00000494728 CUX1P39880 1505 aa21.27■■□□□ 1
VTI1A-208ENST00000494728 AQRO60306 1485 aaKnown RBP eCLIP21.26■□□□□ 0.99
VTI1A-208ENST00000494728 RAD54L2Q9Y4B4 1467 aa21.26■□□□□ 0.99
VTI1A-208ENST00000494728 OSCARQ8IYS5 282 aa21.25■□□□□ 0.99
VTI1A-208ENST00000494728 FGD5Q6ZNL6 1462 aa21.23■□□□□ 0.99
VTI1A-208ENST00000494728 TRIM41Q8WV44 630 aa21.22■□□□□ 0.99
VTI1A-208ENST00000494728 WDR97A6NE52 1622 aa21.21■□□□□ 0.99
VTI1A-208ENST00000494728 RIMBP3CA6NJZ7 1639 aa21.2■□□□□ 0.98
VTI1A-208ENST00000494728 RIMBP3BA6NNM3 1639 aa21.2■□□□□ 0.98
VTI1A-208ENST00000494728 RIMBP3Q9UFD9 1639 aa21.2■□□□□ 0.98
VTI1A-208ENST00000494728 SUPT5HO00267 1087 aaKnown RBP21.2■□□□□ 0.98
VTI1A-208ENST00000494728 SOGA1O94964 1423 aa21.15■□□□□ 0.98
VTI1A-208ENST00000494728 TDRD9Q8NDG6 1382 aaKnown RBP21.11■□□□□ 0.97
VTI1A-208ENST00000494728 ARHGEF11O15085 1522 aa21.11■□□□□ 0.97
VTI1A-208ENST00000494728 PBRM1Q86U86 1689 aa21.09■□□□□ 0.97
VTI1A-208ENST00000494728 SNAPC4Q5SXM2 1469 aa21.07■□□□□ 0.96
VTI1A-208ENST00000494728 ABCA5Q8WWZ7 1642 aa21.03■□□□□ 0.96
VTI1A-208ENST00000494728 BIVM-ERCC5R4GMW8 1640 aa21.01■□□□□ 0.95
VTI1A-208ENST00000494728 SYNJ1O43426 1573 aa21■□□□□ 0.95
VTI1A-208ENST00000494728 GRIN2BQ13224 1484 aa20.98■□□□□ 0.95
VTI1A-208ENST00000494728 MAGI1Q96QZ7 1491 aaPredicted RBP20.98■□□□□ 0.95
VTI1A-208ENST00000494728 CLASP1Q7Z460 1538 aa20.98■□□□□ 0.95
VTI1A-208ENST00000494728 ABCA10Q8WWZ4 1543 aa20.97■□□□□ 0.95
VTI1A-208ENST00000494728 TOP2BQ02880 1626 aa20.96■□□□□ 0.95
VTI1A-208ENST00000494728 FBLN2P98095 1184 aa20.96■□□□□ 0.95
VTI1A-208ENST00000494728 GAPVD1Q14C86 1478 aa20.94■□□□□ 0.94
VTI1A-208ENST00000494728 ARAP1Q96P48 1450 aa20.93■□□□□ 0.94
VTI1A-208ENST00000494728 SYNJ2O15056 1496 aa20.91■□□□□ 0.94
VTI1A-208ENST00000494728 WRNQ14191 1432 aaPredicted RBP eCLIP20.88■□□□□ 0.93
VTI1A-208ENST00000494728 ADAMTS12P58397 1594 aa20.85■□□□□ 0.93
VTI1A-208ENST00000494728 CHMP7Q8WUX9 453 aaPredicted RBP20.81■□□□□ 0.92
VTI1A-208ENST00000494728 CYB5RLQ6IPT4 315 aa20.79■□□□□ 0.92
VTI1A-208ENST00000494728 GRIN2AQ12879 1464 aa20.76■□□□□ 0.91
VTI1A-208ENST00000494728 CEP170Q5SW79 1584 aa20.76■□□□□ 0.91
VTI1A-208ENST00000494728 CHIC1Q5VXU3 224 aa20.74■□□□□ 0.91
VTI1A-208ENST00000494728 ERICH3Q5RHP9 1530 aa20.71■□□□□ 0.91
VTI1A-208ENST00000494728 ERCC6L2Q5T890 1561 aa20.71■□□□□ 0.91
VTI1A-208ENST00000494728 NUP160Q12769 1436 aa20.68■□□□□ 0.9
VTI1A-208ENST00000494728 SHROOM2Q13796 1616 aa20.65■□□□□ 0.9
VTI1A-208ENST00000494728 FHAD1B1AJZ9 1412 aa20.65■□□□□ 0.9
VTI1A-208ENST00000494728 RUSC2Q8N2Y8 1516 aa20.57■□□□□ 0.88
VTI1A-208ENST00000494728 CUL7Q14999 1698 aa20.48■□□□□ 0.87
VTI1A-208ENST00000494728 TRHP20396 242 aaPredicted RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms