RNA–Protein interactions for RNA: ENST00000494069.1

LRCH3-219, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 783 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-219ENST00000494069 NISCHQ9Y2I1 1504 aa21.14■□□□□ 0.98
LRCH3-219ENST00000494069 AEBP2Q6ZN18 517 aaPredicted RBP20.61■□□□□ 0.89
LRCH3-219ENST00000494069 CHIC1Q5VXU3 224 aa19.72■□□□□ 0.75
LRCH3-219ENST00000494069 CCDC180Q9P1Z9 1646 aa18.82■□□□□ 0.6
LRCH3-219ENST00000494069 ABCC9O60706 1549 aa18.79■□□□□ 0.6
LRCH3-219ENST00000494069 DCAF8L2P0C7V8 631 aa17.87■□□□□ 0.45
LRCH3-219ENST00000494069 RB1CC1Q8TDY2 1594 aa17.86■□□□□ 0.45
LRCH3-219ENST00000494069 NACADO15069 1562 aa17.78■□□□□ 0.44
LRCH3-219ENST00000494069 PABPN1Q86U42 306 aaKnown RBP eCLIP17.57■□□□□ 0.4
LRCH3-219ENST00000494069 MYO15BQ96JP2 1530 aa17.57■□□□□ 0.4
LRCH3-219ENST00000494069 DNAJC5BQ9UF47 199 aa17.55■□□□□ 0.4
LRCH3-219ENST00000494069 ZCCHC6Q5VYS8 1495 aaKnown RBP17.55■□□□□ 0.4
LRCH3-219ENST00000494069 UNC13AQ9UPW8 1703 aa17.48■□□□□ 0.39
LRCH3-219ENST00000494069 DCAF1Q9Y4B6 1507 aa17.42■□□□□ 0.38
LRCH3-219ENST00000494069 SENP3Q9H4L4 574 aaPredicted RBP17.4■□□□□ 0.38
LRCH3-219ENST00000494069 BICRAQ9NZM4 1560 aa17.4■□□□□ 0.38
LRCH3-219ENST00000494069 PHF23Q9BUL5 403 aaPredicted RBP17.39■□□□□ 0.37
LRCH3-219ENST00000494069 SCRIBQ14160 1630 aa17.25■□□□□ 0.35
LRCH3-219ENST00000494069 SHROOM4Q9ULL8 1493 aa17.06■□□□□ 0.32
LRCH3-219ENST00000494069 EIF4G1Q04637 1599 aaKnown RBP16.94■□□□□ 0.3
LRCH3-219ENST00000494069 CC2D2AQ9P2K1 1620 aa16.93■□□□□ 0.3
LRCH3-219ENST00000494069 CECR2Q9BXF3 1484 aa16.87■□□□□ 0.29
LRCH3-219ENST00000494069 NCAPD3P42695 1498 aa16.45■□□□□ 0.22
LRCH3-219ENST00000494069 ATAD2BQ9ULI0 1458 aa16.44■□□□□ 0.22
LRCH3-219ENST00000494069 SMARCA4P51532 1647 aa16.44■□□□□ 0.22
LRCH3-219ENST00000494069 BAZ1AQ9NRL2 1556 aaPredicted RBP16.37■□□□□ 0.21
LRCH3-219ENST00000494069 SMARCA2P51531 1590 aa16.35■□□□□ 0.21
LRCH3-219ENST00000494069 MROH2BQ7Z745 1585 aa16.34■□□□□ 0.21
LRCH3-219ENST00000494069 HMGXB3Q12766 1538 aa16.3■□□□□ 0.2
LRCH3-219ENST00000494069 FOXD1Q16676 465 aa16.28■□□□□ 0.2
LRCH3-219ENST00000494069 BAZ1BQ9UIG0 1483 aaKnown RBP16.27■□□□□ 0.19
LRCH3-219ENST00000494069 PEG3Q9GZU2 1588 aa16.25■□□□□ 0.19
LRCH3-219ENST00000494069 NESP48681 1621 aa16.2■□□□□ 0.18
LRCH3-219ENST00000494069 ERCC6Q03468 1493 aa16.16■□□□□ 0.18
LRCH3-219ENST00000494069 WIZO95785 1651 aa16.13■□□□□ 0.17
LRCH3-219ENST00000494069 RSF1Q96T23 1441 aaPredicted RBP16.06■□□□□ 0.16
LRCH3-219ENST00000494069 CUX2O14529 1486 aa16.03■□□□□ 0.16
LRCH3-219ENST00000494069 LAMC3Q9Y6N6 1575 aa16.01■□□□□ 0.15
LRCH3-219ENST00000494069 CADPSQ9ULU8 1353 aa15.98■□□□□ 0.15
LRCH3-219ENST00000494069 PDS5BQ9NTI5 1447 aa15.94■□□□□ 0.14
LRCH3-219ENST00000494069 KIF21AQ7Z4S6 1674 aa15.92■□□□□ 0.14
LRCH3-219ENST00000494069 THOC2Q8NI27 1593 aaKnown RBP15.92■□□□□ 0.14
LRCH3-219ENST00000494069 DNAJC5Q9H3Z4 198 aa15.92■□□□□ 0.14
LRCH3-219ENST00000494069 TOP2AP11388 1531 aaKnown RBP15.9■□□□□ 0.14
LRCH3-219ENST00000494069 PLPPR3Q6T4P5 718 aa15.82■□□□□ 0.12
LRCH3-219ENST00000494069 CFTRP13569 1480 aa15.81■□□□□ 0.12
LRCH3-219ENST00000494069 MRC2Q9UBG0 1479 aa15.8■□□□□ 0.12
LRCH3-219ENST00000494069 FANCD2Q9BXW9 1451 aa15.79■□□□□ 0.12
LRCH3-219ENST00000494069 CCDC88BA6NC98 1476 aa15.77■□□□□ 0.11
LRCH3-219ENST00000494069 CEP164Q9UPV0 1460 aa15.77■□□□□ 0.11
LRCH3-219ENST00000494069 WDR62O43379 1518 aa15.74■□□□□ 0.11
LRCH3-219ENST00000494069 URB2Q14146 1524 aaKnown RBP15.67■□□□□ 0.1
LRCH3-219ENST00000494069 PRDM2Q13029 1718 aa15.58■□□□□ 0.08
LRCH3-219ENST00000494069 SUPT5HO00267 1087 aaKnown RBP15.53■□□□□ 0.08
LRCH3-219ENST00000494069 TOPBP1Q92547 1522 aa15.51■□□□□ 0.07
LRCH3-219ENST00000494069 PPP6R1Q9UPN7 881 aa15.47■□□□□ 0.07
LRCH3-219ENST00000494069 ZNF608Q9ULD9 1512 aaPredicted RBP15.47■□□□□ 0.07
LRCH3-219ENST00000494069 IFT140Q96RY7 1462 aa15.45■□□□□ 0.06
LRCH3-219ENST00000494069 DNMBPQ6XZF7 1577 aa15.44■□□□□ 0.06
LRCH3-219ENST00000494069 ABCC8Q09428 1581 aa15.43■□□□□ 0.06
LRCH3-219ENST00000494069 ADRA2BP18089 450 aa15.41■□□□□ 0.06
LRCH3-219ENST00000494069 OSCARQ8IYS5 282 aa15.4■□□□□ 0.06
LRCH3-219ENST00000494069 POLA1P09884 1462 aaPredicted RBP15.36■□□□□ 0.05
LRCH3-219ENST00000494069 AQRO60306 1485 aaKnown RBP eCLIP15.35■□□□□ 0.052e-7■■□□□ 12.5
LRCH3-219ENST00000494069 RAD54L2Q9Y4B4 1467 aa15.35■□□□□ 0.05
LRCH3-219ENST00000494069 TARBP1Q13395 1621 aaKnown RBP15.35■□□□□ 0.05
LRCH3-219ENST00000494069 EIF4G3O43432 1585 aaKnown RBP15.33■□□□□ 0.05
LRCH3-219ENST00000494069 CUX1P39880 1505 aa15.33■□□□□ 0.04
LRCH3-219ENST00000494069 TRIM41Q8WV44 630 aa15.32■□□□□ 0.04
LRCH3-219ENST00000494069 SOGA1O94964 1423 aa15.31■□□□□ 0.04
LRCH3-219ENST00000494069 FGD5Q6ZNL6 1462 aa15.3■□□□□ 0.04
LRCH3-219ENST00000494069 TDRD9Q8NDG6 1382 aaKnown RBP15.29■□□□□ 0.04
LRCH3-219ENST00000494069 PIAS4Q8N2W9 510 aaPredicted RBP15.23■□□□□ 0.03
LRCH3-219ENST00000494069 FBLN2P98095 1184 aa15.22■□□□□ 0.03
LRCH3-219ENST00000494069 CHD1O14646 1710 aa15.18■□□□□ 0.02
LRCH3-219ENST00000494069 SNAPC4Q5SXM2 1469 aa15.17■□□□□ 0.02
LRCH3-219ENST00000494069 RIMBP3CA6NJZ7 1639 aa15.16■□□□□ 0.02
LRCH3-219ENST00000494069 RIMBP3BA6NNM3 1639 aa15.16■□□□□ 0.02
LRCH3-219ENST00000494069 RIMBP3Q9UFD9 1639 aa15.16■□□□□ 0.02
LRCH3-219ENST00000494069 WDR97A6NE52 1622 aa15.13■□□□□ 0.01
LRCH3-219ENST00000494069 GRIN2BQ13224 1484 aa15.13■□□□□ 0.01
LRCH3-219ENST00000494069 ARHGEF11O15085 1522 aa15.12■□□□□ 0.01
LRCH3-219ENST00000494069 WRNQ14191 1432 aaPredicted RBP eCLIP15.12■□□□□ 0.01
LRCH3-219ENST00000494069 CHMP7Q8WUX9 453 aaPredicted RBP15.11■□□□□ 0.01
LRCH3-219ENST00000494069 GAPVD1Q14C86 1478 aa15.11■□□□□ 0.01
LRCH3-219ENST00000494069 ABCA10Q8WWZ4 1543 aa15.11■□□□□ 0.01
LRCH3-219ENST00000494069 SYNJ1O43426 1573 aa15.11■□□□□ 0.01
LRCH3-219ENST00000494069 MAGI1Q96QZ7 1491 aaPredicted RBP15.09■□□□□ 0.01
LRCH3-219ENST00000494069 TOP2BQ02880 1626 aa15.07■□□□□ 0
LRCH3-219ENST00000494069 CYB5RLQ6IPT4 315 aa15.07■□□□□ 0
LRCH3-219ENST00000494069 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
LRCH3-219ENST00000494069 ABCA5Q8WWZ7 1642 aa15.06■□□□□ 0
LRCH3-219ENST00000494069 SYNJ2O15056 1496 aa15.05■□□□□ -0
LRCH3-219ENST00000494069 PBRM1Q86U86 1689 aa15.05■□□□□ -0
LRCH3-219ENST00000494069 MSH5O43196 834 aa15.04■□□□□ -0
LRCH3-219ENST00000494069 CLASP1Q7Z460 1538 aa15.02■□□□□ -0
LRCH3-219ENST00000494069 ARAP1Q96P48 1450 aa15.01□□□□□ -0.01
LRCH3-219ENST00000494069 GRIN2AQ12879 1464 aa14.95□□□□□ -0.02
LRCH3-219ENST00000494069 ADAMTS12P58397 1594 aa14.94□□□□□ -0.02
LRCH3-219ENST00000494069 FHAD1B1AJZ9 1412 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms