RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 AEBP2Q6ZN18 517 aaPredicted RBP26.17■■□□□ 1.78
PDLIM1-205ENST00000493949 NISCHQ9Y2I1 1504 aa25.94■■□□□ 1.74
PDLIM1-205ENST00000493949 CHIC1Q5VXU3 224 aa24.53■■□□□ 1.52
PDLIM1-205ENST00000493949 ABCC9O60706 1549 aa24.19■■□□□ 1.46
PDLIM1-205ENST00000493949 CCDC180Q9P1Z9 1646 aa23.68■■□□□ 1.38
PDLIM1-205ENST00000493949 DNAJC5BQ9UF47 199 aa23.34■■□□□ 1.33
PDLIM1-205ENST00000493949 RB1CC1Q8TDY2 1594 aa22.81■■□□□ 1.24
PDLIM1-205ENST00000493949 NACADO15069 1562 aa22.5■■□□□ 1.19
PDLIM1-205ENST00000493949 SENP3Q9H4L4 574 aaPredicted RBP22.45■■□□□ 1.18
PDLIM1-205ENST00000493949 UNC13AQ9UPW8 1703 aa22.37■■□□□ 1.17
PDLIM1-205ENST00000493949 PABPN1Q86U42 306 aaKnown RBP eCLIP22.36■■□□□ 1.17
PDLIM1-205ENST00000493949 BICRAQ9NZM4 1560 aa22.21■■□□□ 1.15
PDLIM1-205ENST00000493949 PHF23Q9BUL5 403 aaPredicted RBP22.09■■□□□ 1.13
PDLIM1-205ENST00000493949 MYO15BQ96JP2 1530 aa22.03■■□□□ 1.12
PDLIM1-205ENST00000493949 DCAF8L2P0C7V8 631 aa21.99■■□□□ 1.11
PDLIM1-205ENST00000493949 DNAJC5Q9H3Z4 198 aa21.99■■□□□ 1.11
PDLIM1-205ENST00000493949 CECR2Q9BXF3 1484 aa21.9■■□□□ 1.1
PDLIM1-205ENST00000493949 CC2D2AQ9P2K1 1620 aa21.89■■□□□ 1.09
PDLIM1-205ENST00000493949 SHROOM4Q9ULL8 1493 aa21.88■■□□□ 1.09
PDLIM1-205ENST00000493949 EIF4G1Q04637 1599 aaKnown RBP21.69■■□□□ 1.06
PDLIM1-205ENST00000493949 DCAF1Q9Y4B6 1507 aa21.47■■□□□ 1.03
PDLIM1-205ENST00000493949 SCRIBQ14160 1630 aa21.39■■□□□ 1.01
PDLIM1-205ENST00000493949 ZCCHC6Q5VYS8 1495 aaKnown RBP21.36■■□□□ 1.01
PDLIM1-205ENST00000493949 CUX2O14529 1486 aa21.24■□□□□ 0.99
PDLIM1-205ENST00000493949 FOXD1Q16676 465 aa20.95■□□□□ 0.94
PDLIM1-205ENST00000493949 ERCC6Q03468 1493 aa20.93■□□□□ 0.94
PDLIM1-205ENST00000493949 NCAPD3P42695 1498 aa20.78■□□□□ 0.92
PDLIM1-205ENST00000493949 THOC2Q8NI27 1593 aaKnown RBP20.62■□□□□ 0.89
PDLIM1-205ENST00000493949 NESP48681 1621 aa20.6■□□□□ 0.89
PDLIM1-205ENST00000493949 TRIM41Q8WV44 630 aa20.59■□□□□ 0.89
PDLIM1-205ENST00000493949 HMGXB3Q12766 1538 aa20.58■□□□□ 0.88
PDLIM1-205ENST00000493949 ATAD2BQ9ULI0 1458 aa20.57■□□□□ 0.88
PDLIM1-205ENST00000493949 SMARCA2P51531 1590 aa20.51■□□□□ 0.87
PDLIM1-205ENST00000493949 LAMC3Q9Y6N6 1575 aa20.43■□□□□ 0.86
PDLIM1-205ENST00000493949 SMARCA4P51532 1647 aa20.41■□□□□ 0.86
PDLIM1-205ENST00000493949 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
PDLIM1-205ENST00000493949 BAZ1BQ9UIG0 1483 aaKnown RBP20.31■□□□□ 0.84
PDLIM1-205ENST00000493949 PDS5BQ9NTI5 1447 aa20.28■□□□□ 0.84
PDLIM1-205ENST00000493949 PEG3Q9GZU2 1588 aa20.27■□□□□ 0.84
PDLIM1-205ENST00000493949 BAZ1AQ9NRL2 1556 aaPredicted RBP20.2■□□□□ 0.82
PDLIM1-205ENST00000493949 WDR62O43379 1518 aa20.17■□□□□ 0.82
PDLIM1-205ENST00000493949 MRC2Q9UBG0 1479 aa20.15■□□□□ 0.82
PDLIM1-205ENST00000493949 OSCARQ8IYS5 282 aa20.07■□□□□ 0.8
PDLIM1-205ENST00000493949 CADPSQ9ULU8 1353 aa20.07■□□□□ 0.8
PDLIM1-205ENST00000493949 POTEDQ86YR6 584 aa20.05■□□□□ 0.8
PDLIM1-205ENST00000493949 MROH2BQ7Z745 1585 aa19.95■□□□□ 0.78
PDLIM1-205ENST00000493949 RIMBP3CA6NJZ7 1639 aa19.94■□□□□ 0.78
PDLIM1-205ENST00000493949 RIMBP3BA6NNM3 1639 aa19.94■□□□□ 0.78
PDLIM1-205ENST00000493949 RIMBP3Q9UFD9 1639 aa19.94■□□□□ 0.78
PDLIM1-205ENST00000493949 CEP164Q9UPV0 1460 aa19.92■□□□□ 0.78
PDLIM1-205ENST00000493949 FANCD2Q9BXW9 1451 aa19.82■□□□□ 0.76
PDLIM1-205ENST00000493949 MSH5O43196 834 aa19.81■□□□□ 0.76
PDLIM1-205ENST00000493949 ARHGEF11O15085 1522 aa19.79■□□□□ 0.76
PDLIM1-205ENST00000493949 URB2Q14146 1524 aaKnown RBP19.72■□□□□ 0.75
PDLIM1-205ENST00000493949 CFTRP13569 1480 aa19.72■□□□□ 0.75
PDLIM1-205ENST00000493949 WIZO95785 1651 aa19.7■□□□□ 0.74
PDLIM1-205ENST00000493949 CYB5RLQ6IPT4 315 aa19.59■□□□□ 0.73
PDLIM1-205ENST00000493949 TRHP20396 242 aaPredicted RBP19.57■□□□□ 0.72
PDLIM1-205ENST00000493949 ZNF608Q9ULD9 1512 aaPredicted RBP19.56■□□□□ 0.72
PDLIM1-205ENST00000493949 IFT140Q96RY7 1462 aa19.56■□□□□ 0.72
PDLIM1-205ENST00000493949 PRDM2Q13029 1718 aa19.56■□□□□ 0.72
PDLIM1-205ENST00000493949 ARAP1Q96P48 1450 aa19.54■□□□□ 0.72
PDLIM1-205ENST00000493949 PIAS4Q8N2W9 510 aaPredicted RBP19.51■□□□□ 0.71
PDLIM1-205ENST00000493949 CHD1O14646 1710 aa19.48■□□□□ 0.71
PDLIM1-205ENST00000493949 EIF4G3O43432 1585 aaKnown RBP19.47■□□□□ 0.71
PDLIM1-205ENST00000493949 RSF1Q96T23 1441 aaPredicted RBP19.46■□□□□ 0.71
PDLIM1-205ENST00000493949 TOP2AP11388 1531 aaKnown RBP19.41■□□□□ 0.7
PDLIM1-205ENST00000493949 TOPBP1Q92547 1522 aa19.39■□□□□ 0.69
PDLIM1-205ENST00000493949 PLPPR3Q6T4P5 718 aa19.38■□□□□ 0.69
PDLIM1-205ENST00000493949 ABCC8Q09428 1581 aa19.34■□□□□ 0.69
PDLIM1-205ENST00000493949 TARBP1Q13395 1621 aaKnown RBP19.33■□□□□ 0.68
PDLIM1-205ENST00000493949 AQRO60306 1485 aaKnown RBP eCLIP19.28■□□□□ 0.681e-7■■■□□ 16.7
PDLIM1-205ENST00000493949 DNMBPQ6XZF7 1577 aa19.27■□□□□ 0.68
PDLIM1-205ENST00000493949 CLASP1Q7Z460 1538 aa19.25■□□□□ 0.67
PDLIM1-205ENST00000493949 PPP6R1Q9UPN7 881 aa19.24■□□□□ 0.67
PDLIM1-205ENST00000493949 FBLN2P98095 1184 aa19.2■□□□□ 0.66
PDLIM1-205ENST00000493949 ADRA2BP18089 450 aa19.18■□□□□ 0.66
PDLIM1-205ENST00000493949 CCDC88BA6NC98 1476 aa19.16■□□□□ 0.66
PDLIM1-205ENST00000493949 POLA1P09884 1462 aaPredicted RBP19.15■□□□□ 0.66
PDLIM1-205ENST00000493949 SYNJ1O43426 1573 aa19.14■□□□□ 0.65
PDLIM1-205ENST00000493949 WDR97A6NE52 1622 aa19.13■□□□□ 0.65
PDLIM1-205ENST00000493949 SNAPC4Q5SXM2 1469 aa19.09■□□□□ 0.65
PDLIM1-205ENST00000493949 MAGI1Q96QZ7 1491 aaPredicted RBP19.05■□□□□ 0.64
PDLIM1-205ENST00000493949 RAD54L2Q9Y4B4 1467 aa19.04■□□□□ 0.64
PDLIM1-205ENST00000493949 TDRD9Q8NDG6 1382 aaKnown RBP19.04■□□□□ 0.64
PDLIM1-205ENST00000493949 GAPVD1Q14C86 1478 aa19.03■□□□□ 0.64
PDLIM1-205ENST00000493949 SOGA1O94964 1423 aa19.01■□□□□ 0.63
PDLIM1-205ENST00000493949 CHMP7Q8WUX9 453 aaPredicted RBP19.01■□□□□ 0.63
PDLIM1-205ENST00000493949 SYNJ2O15056 1496 aa18.98■□□□□ 0.63
PDLIM1-205ENST00000493949 GRIN2BQ13224 1484 aa18.96■□□□□ 0.63
PDLIM1-205ENST00000493949 KIF13AQ9H1H9 1805 aa18.92■□□□□ 0.62
PDLIM1-205ENST00000493949 FGD5Q6ZNL6 1462 aa18.9■□□□□ 0.62
PDLIM1-205ENST00000493949 PBRM1Q86U86 1689 aa18.89■□□□□ 0.61
PDLIM1-205ENST00000493949 ERCC6L2Q5T890 1561 aa18.84■□□□□ 0.61
PDLIM1-205ENST00000493949 ILDR1Q86SU0 546 aaPredicted RBP18.82■□□□□ 0.6
PDLIM1-205ENST00000493949 CUX1P39880 1505 aa18.79■□□□□ 0.6
PDLIM1-205ENST00000493949 CEP170Q5SW79 1584 aa18.76■□□□□ 0.59
PDLIM1-205ENST00000493949 SHROOM2Q13796 1616 aa18.75■□□□□ 0.59
PDLIM1-205ENST00000493949 ABCA5Q8WWZ7 1642 aa18.75■□□□□ 0.59
PDLIM1-205ENST00000493949 GRIN2AQ12879 1464 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms