RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 NISCHQ9Y2I1 1504 aa43.73■■■■■ 4.59
COL9A1-210ENST00000493682 ABCC9O60706 1549 aa39.36■■■■□ 3.89
COL9A1-210ENST00000493682 CCDC180Q9P1Z9 1646 aa39.24■■■■□ 3.87
COL9A1-210ENST00000493682 RB1CC1Q8TDY2 1594 aa37.41■■■■□ 3.58
COL9A1-210ENST00000493682 NACADO15069 1562 aa37.14■■■■□ 3.54
COL9A1-210ENST00000493682 DNAJC5BQ9UF47 199 aa37.03■■■■□ 3.52
COL9A1-210ENST00000493682 DCAF8L2P0C7V8 631 aa36.96■■■■□ 3.51
COL9A1-210ENST00000493682 PABPN1Q86U42 306 aaKnown RBP eCLIP36.65■■■■□ 3.46
COL9A1-210ENST00000493682 MYO15BQ96JP2 1530 aa36.6■■■■□ 3.45
COL9A1-210ENST00000493682 UNC13AQ9UPW8 1703 aa36.54■■■■□ 3.44
COL9A1-210ENST00000493682 BICRAQ9NZM4 1560 aa36.34■■■■□ 3.41
COL9A1-210ENST00000493682 ZCCHC6Q5VYS8 1495 aaKnown RBP36.22■■■■□ 3.39
COL9A1-210ENST00000493682 DCAF1Q9Y4B6 1507 aa36.11■■■■□ 3.37
COL9A1-210ENST00000493682 SHROOM4Q9ULL8 1493 aa35.83■■■■□ 3.33
COL9A1-210ENST00000493682 SCRIBQ14160 1630 aa35.78■■■■□ 3.32
COL9A1-210ENST00000493682 CC2D2AQ9P2K1 1620 aa35.54■■■■□ 3.28
COL9A1-210ENST00000493682 CECR2Q9BXF3 1484 aa35.47■■■■□ 3.27
COL9A1-210ENST00000493682 EIF4G1Q04637 1599 aaKnown RBP35.44■■■■□ 3.26
COL9A1-210ENST00000493682 NCAPD3P42695 1498 aa34.31■■■■□ 3.08
COL9A1-210ENST00000493682 ATAD2BQ9ULI0 1458 aa34.19■■■■□ 3.06
COL9A1-210ENST00000493682 SMARCA4P51532 1647 aa34.12■■■■□ 3.05
COL9A1-210ENST00000493682 SMARCA2P51531 1590 aa34.07■■■■□ 3.05
COL9A1-210ENST00000493682 DNAJC5Q9H3Z4 198 aa34.05■■■■□ 3.04
COL9A1-210ENST00000493682 HMGXB3Q12766 1538 aa34.02■■■■□ 3.04
COL9A1-210ENST00000493682 ERCC6Q03468 1493 aa33.98■■■■□ 3.03
COL9A1-210ENST00000493682 CUX2O14529 1486 aa33.95■■■■□ 3.02
COL9A1-210ENST00000493682 BAZ1AQ9NRL2 1556 aaPredicted RBP33.94■■■■□ 3.02
COL9A1-210ENST00000493682 BAZ1BQ9UIG0 1483 aaKnown RBP33.84■■■■□ 3.01
COL9A1-210ENST00000493682 NESP48681 1621 aa33.8■■■■□ 3
COL9A1-210ENST00000493682 PEG3Q9GZU2 1588 aa33.79■■■■□ 3
COL9A1-210ENST00000493682 MROH2BQ7Z745 1585 aa33.7■■■□□ 2.99
COL9A1-210ENST00000493682 LAMC3Q9Y6N6 1575 aa33.52■■■□□ 2.96
COL9A1-210ENST00000493682 THOC2Q8NI27 1593 aaKnown RBP33.44■■■□□ 2.94
COL9A1-210ENST00000493682 PDS5BQ9NTI5 1447 aa33.36■■■□□ 2.93
COL9A1-210ENST00000493682 KIF21AQ7Z4S6 1674 aa33.32■■■□□ 2.92
COL9A1-210ENST00000493682 WIZO95785 1651 aa33.28■■■□□ 2.92
COL9A1-210ENST00000493682 CADPSQ9ULU8 1353 aa33.26■■■□□ 2.92
COL9A1-210ENST00000493682 MRC2Q9UBG0 1479 aa33.06■■■□□ 2.88
COL9A1-210ENST00000493682 WDR62O43379 1518 aa32.98■■■□□ 2.87
COL9A1-210ENST00000493682 RSF1Q96T23 1441 aaPredicted RBP32.98■■■□□ 2.87
COL9A1-210ENST00000493682 CEP164Q9UPV0 1460 aa32.92■■■□□ 2.86
COL9A1-210ENST00000493682 FANCD2Q9BXW9 1451 aa32.88■■■□□ 2.85
COL9A1-210ENST00000493682 CFTRP13569 1480 aa32.86■■■□□ 2.85
COL9A1-210ENST00000493682 TOP2AP11388 1531 aaKnown RBP32.85■■■□□ 2.85
COL9A1-210ENST00000493682 URB2Q14146 1524 aaKnown RBP32.62■■■□□ 2.81
COL9A1-210ENST00000493682 AEBP2Q6ZN18 517 aaPredicted RBP32.62■■■□□ 2.81
COL9A1-210ENST00000493682 TRIM41Q8WV44 630 aa32.51■■■□□ 2.79
COL9A1-210ENST00000493682 CCDC88BA6NC98 1476 aa32.5■■■□□ 2.79
COL9A1-210ENST00000493682 PRDM2Q13029 1718 aa32.46■■■□□ 2.79
COL9A1-210ENST00000493682 OSCARQ8IYS5 282 aa32.41■■■□□ 2.78
COL9A1-210ENST00000493682 IFT140Q96RY7 1462 aa32.26■■■□□ 2.75
COL9A1-210ENST00000493682 TOPBP1Q92547 1522 aa32.25■■■□□ 2.75
COL9A1-210ENST00000493682 ZNF608Q9ULD9 1512 aaPredicted RBP32.24■■■□□ 2.75
COL9A1-210ENST00000493682 ABCC8Q09428 1581 aa32.16■■■□□ 2.74
COL9A1-210ENST00000493682 DNMBPQ6XZF7 1577 aa32.11■■■□□ 2.73
COL9A1-210ENST00000493682 EIF4G3O43432 1585 aaKnown RBP32.02■■■□□ 2.72
COL9A1-210ENST00000493682 RIMBP3CA6NJZ7 1639 aa31.97■■■□□ 2.71
COL9A1-210ENST00000493682 RIMBP3BA6NNM3 1639 aa31.97■■■□□ 2.71
COL9A1-210ENST00000493682 RIMBP3Q9UFD9 1639 aa31.97■■■□□ 2.71
COL9A1-210ENST00000493682 TARBP1Q13395 1621 aaKnown RBP31.96■■■□□ 2.71
COL9A1-210ENST00000493682 AQRO60306 1485 aaKnown RBP eCLIP31.93■■■□□ 2.7
COL9A1-210ENST00000493682 POLA1P09884 1462 aaPredicted RBP31.91■■■□□ 2.7
COL9A1-210ENST00000493682 ARHGEF11O15085 1522 aa31.87■■■□□ 2.69
COL9A1-210ENST00000493682 RAD54L2Q9Y4B4 1467 aa31.81■■■□□ 2.68
COL9A1-210ENST00000493682 CHIC1Q5VXU3 224 aa31.8■■■□□ 2.68
COL9A1-210ENST00000493682 CHD1O14646 1710 aa31.79■■■□□ 2.68
COL9A1-210ENST00000493682 SOGA1O94964 1423 aa31.77■■■□□ 2.68
COL9A1-210ENST00000493682 FBLN2P98095 1184 aa31.74■■■□□ 2.67
COL9A1-210ENST00000493682 TDRD9Q8NDG6 1382 aaKnown RBP31.73■■■□□ 2.67
COL9A1-210ENST00000493682 FGD5Q6ZNL6 1462 aa31.7■■■□□ 2.66
COL9A1-210ENST00000493682 CUX1P39880 1505 aa31.67■■■□□ 2.66
COL9A1-210ENST00000493682 CYB5RLQ6IPT4 315 aa31.66■■■□□ 2.66
COL9A1-210ENST00000493682 WDR97A6NE52 1622 aa31.61■■■□□ 2.65
COL9A1-210ENST00000493682 SNAPC4Q5SXM2 1469 aa31.59■■■□□ 2.65
COL9A1-210ENST00000493682 ARAP1Q96P48 1450 aa31.56■■■□□ 2.64
COL9A1-210ENST00000493682 MAGI1Q96QZ7 1491 aaPredicted RBP31.51■■■□□ 2.63
COL9A1-210ENST00000493682 GRIN2BQ13224 1484 aa31.5■■■□□ 2.63
COL9A1-210ENST00000493682 CHMP7Q8WUX9 453 aaPredicted RBP31.49■■■□□ 2.63
COL9A1-210ENST00000493682 SUPT5HO00267 1087 aaKnown RBP31.47■■■□□ 2.63
COL9A1-210ENST00000493682 CLASP1Q7Z460 1538 aa31.45■■■□□ 2.63
COL9A1-210ENST00000493682 SYNJ1O43426 1573 aa31.41■■■□□ 2.62
COL9A1-210ENST00000493682 SYNJ2O15056 1496 aa31.4■■■□□ 2.62
COL9A1-210ENST00000493682 GAPVD1Q14C86 1478 aa31.38■■■□□ 2.61
COL9A1-210ENST00000493682 PBRM1Q86U86 1689 aa31.34■■■□□ 2.61
COL9A1-210ENST00000493682 ABCA10Q8WWZ4 1543 aa31.34■■■□□ 2.61
COL9A1-210ENST00000493682 TRHP20396 242 aaPredicted RBP31.33■■■□□ 2.61
COL9A1-210ENST00000493682 ABCA5Q8WWZ7 1642 aa31.28■■■□□ 2.6
COL9A1-210ENST00000493682 WRNQ14191 1432 aaPredicted RBP eCLIP31.2■■■□□ 2.59
COL9A1-210ENST00000493682 TOP2BQ02880 1626 aa31.13■■■□□ 2.57
COL9A1-210ENST00000493682 BIVM-ERCC5R4GMW8 1640 aa31.11■■■□□ 2.57
COL9A1-210ENST00000493682 GRIN2AQ12879 1464 aa31.09■■■□□ 2.57
COL9A1-210ENST00000493682 ADAMTS12P58397 1594 aa31.06■■■□□ 2.56
COL9A1-210ENST00000493682 NUP160Q12769 1436 aa31■■■□□ 2.55
COL9A1-210ENST00000493682 FHAD1B1AJZ9 1412 aa30.98■■■□□ 2.55
COL9A1-210ENST00000493682 CEP170Q5SW79 1584 aa30.98■■■□□ 2.55
COL9A1-210ENST00000493682 ERCC6L2Q5T890 1561 aa30.96■■■□□ 2.55
COL9A1-210ENST00000493682 ERICH3Q5RHP9 1530 aa30.93■■■□□ 2.54
COL9A1-210ENST00000493682 SHROOM2Q13796 1616 aa30.86■■■□□ 2.53
COL9A1-210ENST00000493682 PRG4Q92954 1404 aaPredicted RBP30.71■■■□□ 2.51
COL9A1-210ENST00000493682 JPH4Q96JJ6 628 aa30.7■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms