RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 NISCHQ9Y2I1 1504 aa28.69■■■□□ 2.18
COL6A3-213ENST00000493475 AEBP2Q6ZN18 517 aaPredicted RBP28.35■■■□□ 2.13
COL6A3-213ENST00000493475 CHIC1Q5VXU3 224 aa26.41■■□□□ 1.82
COL6A3-213ENST00000493475 CCDC180Q9P1Z9 1646 aa25.78■■□□□ 1.72
COL6A3-213ENST00000493475 ABCC9O60706 1549 aa25.73■■□□□ 1.71
COL6A3-213ENST00000493475 RB1CC1Q8TDY2 1594 aa24.59■■□□□ 1.53
COL6A3-213ENST00000493475 NACADO15069 1562 aa24.41■■□□□ 1.5
COL6A3-213ENST00000493475 DCAF8L2P0C7V8 631 aa24.32■■□□□ 1.48
COL6A3-213ENST00000493475 SENP3Q9H4L4 574 aaPredicted RBP24.11■■□□□ 1.45
COL6A3-213ENST00000493475 MYO15BQ96JP2 1530 aa24.08■■□□□ 1.45
COL6A3-213ENST00000493475 DNAJC5BQ9UF47 199 aa23.99■■□□□ 1.43
COL6A3-213ENST00000493475 PABPN1Q86U42 306 aaKnown RBP eCLIP23.95■■□□□ 1.42
COL6A3-213ENST00000493475 PHF23Q9BUL5 403 aaPredicted RBP23.8■■□□□ 1.4
COL6A3-213ENST00000493475 UNC13AQ9UPW8 1703 aa23.8■■□□□ 1.4
COL6A3-213ENST00000493475 ZCCHC6Q5VYS8 1495 aaKnown RBP23.77■■□□□ 1.4
COL6A3-213ENST00000493475 DCAF1Q9Y4B6 1507 aa23.75■■□□□ 1.39
COL6A3-213ENST00000493475 BICRAQ9NZM4 1560 aa23.69■■□□□ 1.38
COL6A3-213ENST00000493475 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
COL6A3-213ENST00000493475 SCRIBQ14160 1630 aa23.44■■□□□ 1.34
COL6A3-213ENST00000493475 CECR2Q9BXF3 1484 aa23.24■■□□□ 1.31
COL6A3-213ENST00000493475 CC2D2AQ9P2K1 1620 aa23.23■■□□□ 1.31
COL6A3-213ENST00000493475 EIF4G1Q04637 1599 aaKnown RBP23.21■■□□□ 1.31
COL6A3-213ENST00000493475 FOXD1Q16676 465 aa22.62■■□□□ 1.21
COL6A3-213ENST00000493475 NCAPD3P42695 1498 aa22.5■■□□□ 1.19
COL6A3-213ENST00000493475 SMARCA2P51531 1590 aa22.43■■□□□ 1.18
COL6A3-213ENST00000493475 ATAD2BQ9ULI0 1458 aa22.4■■□□□ 1.18
COL6A3-213ENST00000493475 SMARCA4P51532 1647 aa22.37■■□□□ 1.17
COL6A3-213ENST00000493475 ERCC6Q03468 1493 aa22.35■■□□□ 1.17
COL6A3-213ENST00000493475 HMGXB3Q12766 1538 aa22.35■■□□□ 1.17
COL6A3-213ENST00000493475 BAZ1AQ9NRL2 1556 aaPredicted RBP22.34■■□□□ 1.17
COL6A3-213ENST00000493475 CUX2O14529 1486 aa22.28■■□□□ 1.16
COL6A3-213ENST00000493475 BAZ1BQ9UIG0 1483 aaKnown RBP22.26■■□□□ 1.15
COL6A3-213ENST00000493475 DNAJC5Q9H3Z4 198 aa22.21■■□□□ 1.15
COL6A3-213ENST00000493475 PEG3Q9GZU2 1588 aa22.16■■□□□ 1.14
COL6A3-213ENST00000493475 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
COL6A3-213ENST00000493475 NESP48681 1621 aa22.03■■□□□ 1.12
COL6A3-213ENST00000493475 LAMC3Q9Y6N6 1575 aa22.03■■□□□ 1.12
COL6A3-213ENST00000493475 PDS5BQ9NTI5 1447 aa21.97■■□□□ 1.11
COL6A3-213ENST00000493475 THOC2Q8NI27 1593 aaKnown RBP21.84■■□□□ 1.09
COL6A3-213ENST00000493475 CADPSQ9ULU8 1353 aa21.84■■□□□ 1.09
COL6A3-213ENST00000493475 WIZO95785 1651 aa21.76■■□□□ 1.07
COL6A3-213ENST00000493475 KIF21AQ7Z4S6 1674 aa21.76■■□□□ 1.07
COL6A3-213ENST00000493475 MRC2Q9UBG0 1479 aa21.71■■□□□ 1.07
COL6A3-213ENST00000493475 CEP164Q9UPV0 1460 aa21.64■■□□□ 1.06
COL6A3-213ENST00000493475 RSF1Q96T23 1441 aaPredicted RBP21.63■■□□□ 1.05
COL6A3-213ENST00000493475 WDR62O43379 1518 aa21.61■■□□□ 1.05
COL6A3-213ENST00000493475 TOP2AP11388 1531 aaKnown RBP21.59■■□□□ 1.05
COL6A3-213ENST00000493475 POTEDQ86YR6 584 aa21.58■■□□□ 1.05
COL6A3-213ENST00000493475 FANCD2Q9BXW9 1451 aa21.58■■□□□ 1.04
COL6A3-213ENST00000493475 CFTRP13569 1480 aa21.56■■□□□ 1.04
COL6A3-213ENST00000493475 URB2Q14146 1524 aaKnown RBP21.32■■□□□ 1
COL6A3-213ENST00000493475 PRDM2Q13029 1718 aa21.3■■□□□ 1
COL6A3-213ENST00000493475 CCDC88BA6NC98 1476 aa21.3■■□□□ 1
COL6A3-213ENST00000493475 OSCARQ8IYS5 282 aa21.29■■□□□ 1
COL6A3-213ENST00000493475 TRIM41Q8WV44 630 aa21.27■■□□□ 1
COL6A3-213ENST00000493475 ABCC8Q09428 1581 aa21.24■□□□□ 0.99
COL6A3-213ENST00000493475 MSH5O43196 834 aa21.24■□□□□ 0.99
COL6A3-213ENST00000493475 IFT140Q96RY7 1462 aa21.22■□□□□ 0.99
COL6A3-213ENST00000493475 TOPBP1Q92547 1522 aa21.14■□□□□ 0.97
COL6A3-213ENST00000493475 DNMBPQ6XZF7 1577 aa21.09■□□□□ 0.97
COL6A3-213ENST00000493475 ZNF608Q9ULD9 1512 aaPredicted RBP21.04■□□□□ 0.96
COL6A3-213ENST00000493475 EIF4G3O43432 1585 aaKnown RBP20.98■□□□□ 0.95
COL6A3-213ENST00000493475 PIAS4Q8N2W9 510 aaPredicted RBP20.94■□□□□ 0.94
COL6A3-213ENST00000493475 POLA1P09884 1462 aaPredicted RBP20.92■□□□□ 0.94
COL6A3-213ENST00000493475 TARBP1Q13395 1621 aaKnown RBP20.9■□□□□ 0.94
COL6A3-213ENST00000493475 AQRO60306 1485 aaKnown RBP eCLIP20.89■□□□□ 0.94
COL6A3-213ENST00000493475 FBLN2P98095 1184 aa20.89■□□□□ 0.93
COL6A3-213ENST00000493475 SOGA1O94964 1423 aa20.88■□□□□ 0.93
COL6A3-213ENST00000493475 RIMBP3CA6NJZ7 1639 aa20.88■□□□□ 0.93
COL6A3-213ENST00000493475 RIMBP3BA6NNM3 1639 aa20.88■□□□□ 0.93
COL6A3-213ENST00000493475 RIMBP3Q9UFD9 1639 aa20.88■□□□□ 0.93
COL6A3-213ENST00000493475 PPP6R1Q9UPN7 881 aa20.86■□□□□ 0.93
COL6A3-213ENST00000493475 ARHGEF11O15085 1522 aa20.85■□□□□ 0.93
COL6A3-213ENST00000493475 WDR97A6NE52 1622 aa20.85■□□□□ 0.93
COL6A3-213ENST00000493475 PLPPR3Q6T4P5 718 aa20.83■□□□□ 0.93
COL6A3-213ENST00000493475 FGD5Q6ZNL6 1462 aa20.8■□□□□ 0.92
COL6A3-213ENST00000493475 RAD54L2Q9Y4B4 1467 aa20.8■□□□□ 0.92
COL6A3-213ENST00000493475 TDRD9Q8NDG6 1382 aaKnown RBP20.79■□□□□ 0.92
COL6A3-213ENST00000493475 CHD1O14646 1710 aa20.78■□□□□ 0.92
COL6A3-213ENST00000493475 CHMP7Q8WUX9 453 aaPredicted RBP20.75■□□□□ 0.91
COL6A3-213ENST00000493475 SUPT5HO00267 1087 aaKnown RBP20.74■□□□□ 0.91
COL6A3-213ENST00000493475 CYB5RLQ6IPT4 315 aa20.74■□□□□ 0.91
COL6A3-213ENST00000493475 MAGI1Q96QZ7 1491 aaPredicted RBP20.73■□□□□ 0.91
COL6A3-213ENST00000493475 GRIN2BQ13224 1484 aa20.72■□□□□ 0.91
COL6A3-213ENST00000493475 SNAPC4Q5SXM2 1469 aa20.72■□□□□ 0.91
COL6A3-213ENST00000493475 CUX1P39880 1505 aa20.72■□□□□ 0.91
COL6A3-213ENST00000493475 ADRA2BP18089 450 aa20.71■□□□□ 0.91
COL6A3-213ENST00000493475 SYNJ1O43426 1573 aa20.68■□□□□ 0.9
COL6A3-213ENST00000493475 SYNJ2O15056 1496 aa20.64■□□□□ 0.89
COL6A3-213ENST00000493475 GAPVD1Q14C86 1478 aa20.62■□□□□ 0.89
COL6A3-213ENST00000493475 ARAP1Q96P48 1450 aa20.61■□□□□ 0.89
COL6A3-213ENST00000493475 TRHP20396 242 aaPredicted RBP20.59■□□□□ 0.89
COL6A3-213ENST00000493475 ABCA10Q8WWZ4 1543 aa20.58■□□□□ 0.89
COL6A3-213ENST00000493475 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.88
COL6A3-213ENST00000493475 CLASP1Q7Z460 1538 aa20.57■□□□□ 0.88
COL6A3-213ENST00000493475 PBRM1Q86U86 1689 aa20.54■□□□□ 0.88
COL6A3-213ENST00000493475 ABCA5Q8WWZ7 1642 aa20.5■□□□□ 0.87
COL6A3-213ENST00000493475 TOP2BQ02880 1626 aa20.45■□□□□ 0.86
COL6A3-213ENST00000493475 BIVM-ERCC5R4GMW8 1640 aa20.42■□□□□ 0.86
COL6A3-213ENST00000493475 GRIN2AQ12879 1464 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms